data_3HJX # _entry.id 3HJX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HJX pdb_00003hjx 10.2210/pdb3hjx/pdb RCSB RCSB053224 ? ? WWPDB D_1000053224 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3HAF . unspecified PDB 3HAK . unspecified PDB 3HEQ . unspecified PDB 3HER . unspecified PDB 3HES . unspecified PDB 3HJ5 . unspecified # _pdbx_database_status.entry_id 3HJX _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-05-22 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lee, S.' 1 'Antony, L.' 2 'Hartmann, R.' 3 'Knaus, K.J.' 4 'Surewicz, K.' 5 'Surewicz, W.K.' 6 'Yee, V.C.' 7 # _citation.id primary _citation.title 'Conformational diversity in prion protein variants influences intermolecular beta-sheet formation.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 29 _citation.page_first 251 _citation.page_last 262 _citation.year 2010 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19927125 _citation.pdbx_database_id_DOI 10.1038/emboj.2009.333 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, S.' 1 ? primary 'Antony, L.' 2 ? primary 'Hartmann, R.' 3 ? primary 'Knaus, K.J.' 4 ? primary 'Surewicz, K.' 5 ? primary 'Surewicz, W.K.' 6 ? primary 'Yee, V.C.' 7 ? # _cell.entry_id 3HJX _cell.length_a 39.159 _cell.length_b 57.656 _cell.length_c 93.315 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HJX _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Major prion protein' 12644.971 1 ? D178N 'UNP RESIDUES 90-231' ? 2 non-polymer syn 'CADMIUM ION' 112.411 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 55 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PrP, PrP27-30, PrP33-35C, ASCR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGYVLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHNCVNITIKQHTVTTTTKGENFTETDVKM MERVVEQMCITQYERESQAYYQRGSS ; _entity_poly.pdbx_seq_one_letter_code_can ;GGYVLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHNCVNITIKQHTVTTTTKGENFTETDVKM MERVVEQMCITQYERESQAYYQRGSS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 TYR n 1 4 VAL n 1 5 LEU n 1 6 GLY n 1 7 SER n 1 8 ALA n 1 9 MET n 1 10 SER n 1 11 ARG n 1 12 PRO n 1 13 ILE n 1 14 ILE n 1 15 HIS n 1 16 PHE n 1 17 GLY n 1 18 SER n 1 19 ASP n 1 20 TYR n 1 21 GLU n 1 22 ASP n 1 23 ARG n 1 24 TYR n 1 25 TYR n 1 26 ARG n 1 27 GLU n 1 28 ASN n 1 29 MET n 1 30 HIS n 1 31 ARG n 1 32 TYR n 1 33 PRO n 1 34 ASN n 1 35 GLN n 1 36 VAL n 1 37 TYR n 1 38 TYR n 1 39 ARG n 1 40 PRO n 1 41 MET n 1 42 ASP n 1 43 GLU n 1 44 TYR n 1 45 SER n 1 46 ASN n 1 47 GLN n 1 48 ASN n 1 49 ASN n 1 50 PHE n 1 51 VAL n 1 52 HIS n 1 53 ASN n 1 54 CYS n 1 55 VAL n 1 56 ASN n 1 57 ILE n 1 58 THR n 1 59 ILE n 1 60 LYS n 1 61 GLN n 1 62 HIS n 1 63 THR n 1 64 VAL n 1 65 THR n 1 66 THR n 1 67 THR n 1 68 THR n 1 69 LYS n 1 70 GLY n 1 71 GLU n 1 72 ASN n 1 73 PHE n 1 74 THR n 1 75 GLU n 1 76 THR n 1 77 ASP n 1 78 VAL n 1 79 LYS n 1 80 MET n 1 81 MET n 1 82 GLU n 1 83 ARG n 1 84 VAL n 1 85 VAL n 1 86 GLU n 1 87 GLN n 1 88 MET n 1 89 CYS n 1 90 ILE n 1 91 THR n 1 92 GLN n 1 93 TYR n 1 94 GLU n 1 95 ARG n 1 96 GLU n 1 97 SER n 1 98 GLN n 1 99 ALA n 1 100 TYR n 1 101 TYR n 1 102 GLN n 1 103 ARG n 1 104 GLY n 1 105 SER n 1 106 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PRNP, PRIP, PRP' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRIO_HUMAN _struct_ref.pdbx_db_accession P04156 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKM MERVVEQMCITQYERESQAYYQRGSS ; _struct_ref.pdbx_align_begin 126 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HJX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 106 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P04156 _struct_ref_seq.db_align_beg 126 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 231 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 126 _struct_ref_seq.pdbx_auth_seq_align_end 231 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3HJX VAL A 4 ? UNP P04156 MET 129 variant 129 1 1 3HJX ASN A 53 ? UNP P04156 ASP 178 'engineered mutation' 178 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3HJX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_percent_sol 40.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M Tris (pH 7.0), 2.0 M NaCl and 5 mM CdCl2, VAPOR DIFFUSION, SITTING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2006-08-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9198 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9198 # _reflns.entry_id 3HJX _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.000 _reflns.number_obs 7405 _reflns.number_all ? _reflns.percent_possible_obs 99.500 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.186 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.000 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.00 2.07 99.90 0.471 ? ? 4.70 ? ? ? ? ? ? ? 1 2.07 2.15 100.00 0.347 ? ? 5.10 ? ? ? ? ? ? ? 2 2.15 2.25 100.00 0.269 ? ? 5.10 ? ? ? ? ? ? ? 3 2.25 2.37 100.00 0.210 ? ? 5.10 ? ? ? ? ? ? ? 4 2.37 2.52 100.00 0.172 ? ? 5.10 ? ? ? ? ? ? ? 5 2.52 2.71 99.90 0.128 ? ? 5.10 ? ? ? ? ? ? ? 6 2.71 2.99 99.90 0.093 ? ? 5.10 ? ? ? ? ? ? ? 7 2.99 3.42 99.50 0.051 ? ? 5.00 ? ? ? ? ? ? ? 8 3.42 4.31 99.30 0.033 ? ? 5.00 ? ? ? ? ? ? ? 9 4.31 50.00 97.30 0.029 ? ? 4.90 ? ? ? ? ? ? ? 10 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3HJX _refine.ls_number_reflns_obs 7061 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.38 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.20800 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20524 _refine.ls_R_factor_R_free 0.26630 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 341 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.50 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.911 _refine.B_iso_mean 33.288 _refine.aniso_B[1][1] -0.01 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.203 _refine.pdbx_overall_ESU_R_Free 0.189 _refine.overall_SU_ML 0.128 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.583 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 799 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 858 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 27.38 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.021 ? 818 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.464 1.919 ? 1105 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 9.008 5.000 ? 93 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.771 24.000 ? 50 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.159 15.000 ? 140 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.648 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.108 0.200 ? 113 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 648 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.142 1.500 ? 473 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.112 2.000 ? 773 'X-RAY DIFFRACTION' ? r_scbond_it 2.484 3.000 ? 345 'X-RAY DIFFRACTION' ? r_scangle_it 3.985 4.500 ? 332 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.001 _refine_ls_shell.d_res_low 2.053 _refine_ls_shell.number_reflns_R_work 504 _refine_ls_shell.R_factor_R_work 0.247 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.338 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3HJX _struct.title 'Human prion protein variant D178N with V129' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HJX _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;Prion protein, Cell membrane, Disease mutation, Disulfide bond, Glycoprotein, Golgi apparatus, GPI-anchor, Lipoprotein, Membrane, Polymorphism, Prion, MEMBRANE PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 18 ? MET A 29 ? SER A 143 MET A 154 1 ? 12 HELX_P HELX_P2 2 HIS A 30 ? TYR A 32 ? HIS A 155 TYR A 157 5 ? 3 HELX_P HELX_P3 3 ASN A 46 ? THR A 66 ? ASN A 171 THR A 191 1 ? 21 HELX_P HELX_P4 4 THR A 74 ? SER A 97 ? THR A 199 SER A 222 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 54 SG ? ? ? 1_555 A CYS 89 SG ? ? A CYS 179 A CYS 214 1_555 ? ? ? ? ? ? ? 2.039 ? ? metalc1 metalc ? ? A HIS 15 ND1 ? ? ? 1_555 B CD . CD A ? A HIS 140 A CD 300 1_555 ? ? ? ? ? ? ? 2.388 ? ? metalc2 metalc ? ? A HIS 15 ND1 ? ? ? 1_555 B CD . CD B ? A HIS 140 A CD 300 1_555 ? ? ? ? ? ? ? 2.516 ? ? metalc3 metalc ? ? A ASP 22 OD1 ? ? ? 1_555 B CD . CD A ? A ASP 147 A CD 300 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc4 metalc ? ? A ASP 22 OD1 ? ? ? 1_555 B CD . CD B ? A ASP 147 A CD 300 1_555 ? ? ? ? ? ? ? 2.455 ? ? metalc5 metalc ? ? A ASP 22 OD2 ? ? ? 1_555 B CD . CD A ? A ASP 147 A CD 300 1_555 ? ? ? ? ? ? ? 2.300 ? ? metalc6 metalc ? ? A ASP 22 OD2 ? ? ? 1_555 B CD . CD B ? A ASP 147 A CD 300 1_555 ? ? ? ? ? ? ? 2.666 ? ? metalc7 metalc ? ? B CD . CD A ? ? 1_555 D HOH . O ? ? A CD 300 A HOH 350 1_555 ? ? ? ? ? ? ? 2.446 ? ? metalc8 metalc ? ? B CD . CD B ? ? 1_555 D HOH . O B ? A CD 300 A HOH 354 1_555 ? ? ? ? ? ? ? 2.407 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 4 ? LEU A 5 ? VAL A 129 LEU A 130 A 2 TYR A 37 ? TYR A 38 ? TYR A 162 TYR A 163 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 4 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 129 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id TYR _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 38 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id TYR _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 163 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CD 300 ? 6 'BINDING SITE FOR RESIDUE CD A 300' AC2 Software A CL 301 ? 1 'BINDING SITE FOR RESIDUE CL A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 15 ? HIS A 140 . ? 1_555 ? 2 AC1 6 ASP A 22 ? ASP A 147 . ? 1_555 ? 3 AC1 6 HIS A 52 ? HIS A 177 . ? 8_576 ? 4 AC1 6 HOH D . ? HOH A 302 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 350 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 354 . ? 1_555 ? 7 AC2 1 ASN A 48 ? ASN A 173 . ? 6_775 ? # _atom_sites.entry_id 3HJX _atom_sites.fract_transf_matrix[1][1] 0.025537 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017344 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010716 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 126 126 GLY GLY A . n A 1 2 GLY 2 127 127 GLY GLY A . n A 1 3 TYR 3 128 128 TYR TYR A . n A 1 4 VAL 4 129 129 VAL VAL A . n A 1 5 LEU 5 130 130 LEU LEU A . n A 1 6 GLY 6 131 131 GLY GLY A . n A 1 7 SER 7 132 132 SER SER A . n A 1 8 ALA 8 133 133 ALA ALA A . n A 1 9 MET 9 134 134 MET MET A . n A 1 10 SER 10 135 135 SER SER A . n A 1 11 ARG 11 136 136 ARG ARG A . n A 1 12 PRO 12 137 137 PRO PRO A . n A 1 13 ILE 13 138 138 ILE ILE A . n A 1 14 ILE 14 139 139 ILE ILE A . n A 1 15 HIS 15 140 140 HIS HIS A . n A 1 16 PHE 16 141 141 PHE PHE A . n A 1 17 GLY 17 142 142 GLY GLY A . n A 1 18 SER 18 143 143 SER SER A . n A 1 19 ASP 19 144 144 ASP ASP A . n A 1 20 TYR 20 145 145 TYR TYR A . n A 1 21 GLU 21 146 146 GLU GLU A . n A 1 22 ASP 22 147 147 ASP ASP A . n A 1 23 ARG 23 148 148 ARG ARG A . n A 1 24 TYR 24 149 149 TYR TYR A . n A 1 25 TYR 25 150 150 TYR TYR A . n A 1 26 ARG 26 151 151 ARG ARG A . n A 1 27 GLU 27 152 152 GLU GLU A . n A 1 28 ASN 28 153 153 ASN ASN A . n A 1 29 MET 29 154 154 MET MET A . n A 1 30 HIS 30 155 155 HIS HIS A . n A 1 31 ARG 31 156 156 ARG ARG A . n A 1 32 TYR 32 157 157 TYR TYR A . n A 1 33 PRO 33 158 158 PRO PRO A . n A 1 34 ASN 34 159 159 ASN ASN A . n A 1 35 GLN 35 160 160 GLN GLN A . n A 1 36 VAL 36 161 161 VAL VAL A . n A 1 37 TYR 37 162 162 TYR TYR A . n A 1 38 TYR 38 163 163 TYR TYR A . n A 1 39 ARG 39 164 164 ARG ARG A . n A 1 40 PRO 40 165 165 PRO PRO A . n A 1 41 MET 41 166 166 MET MET A . n A 1 42 ASP 42 167 167 ASP ASP A . n A 1 43 GLU 43 168 168 GLU GLU A . n A 1 44 TYR 44 169 169 TYR TYR A . n A 1 45 SER 45 170 170 SER SER A . n A 1 46 ASN 46 171 171 ASN ASN A . n A 1 47 GLN 47 172 172 GLN GLN A . n A 1 48 ASN 48 173 173 ASN ASN A . n A 1 49 ASN 49 174 174 ASN ASN A . n A 1 50 PHE 50 175 175 PHE PHE A . n A 1 51 VAL 51 176 176 VAL VAL A . n A 1 52 HIS 52 177 177 HIS HIS A . n A 1 53 ASN 53 178 178 ASN ASN A . n A 1 54 CYS 54 179 179 CYS CYS A . n A 1 55 VAL 55 180 180 VAL VAL A . n A 1 56 ASN 56 181 181 ASN ASN A . n A 1 57 ILE 57 182 182 ILE ILE A . n A 1 58 THR 58 183 183 THR THR A . n A 1 59 ILE 59 184 184 ILE ILE A . n A 1 60 LYS 60 185 185 LYS LYS A . n A 1 61 GLN 61 186 186 GLN GLN A . n A 1 62 HIS 62 187 187 HIS HIS A . n A 1 63 THR 63 188 188 THR THR A . n A 1 64 VAL 64 189 189 VAL VAL A . n A 1 65 THR 65 190 190 THR THR A . n A 1 66 THR 66 191 191 THR THR A . n A 1 67 THR 67 192 192 THR THR A . n A 1 68 THR 68 193 ? ? ? A . n A 1 69 LYS 69 194 ? ? ? A . n A 1 70 GLY 70 195 ? ? ? A . n A 1 71 GLU 71 196 196 GLU GLU A . n A 1 72 ASN 72 197 197 ASN ASN A . n A 1 73 PHE 73 198 198 PHE PHE A . n A 1 74 THR 74 199 199 THR THR A . n A 1 75 GLU 75 200 200 GLU GLU A . n A 1 76 THR 76 201 201 THR THR A . n A 1 77 ASP 77 202 202 ASP ASP A . n A 1 78 VAL 78 203 203 VAL VAL A . n A 1 79 LYS 79 204 204 LYS LYS A . n A 1 80 MET 80 205 205 MET MET A . n A 1 81 MET 81 206 206 MET MET A . n A 1 82 GLU 82 207 207 GLU GLU A . n A 1 83 ARG 83 208 208 ARG ARG A . n A 1 84 VAL 84 209 209 VAL VAL A . n A 1 85 VAL 85 210 210 VAL VAL A . n A 1 86 GLU 86 211 211 GLU GLU A . n A 1 87 GLN 87 212 212 GLN GLN A . n A 1 88 MET 88 213 213 MET MET A . n A 1 89 CYS 89 214 214 CYS CYS A . n A 1 90 ILE 90 215 215 ILE ILE A . n A 1 91 THR 91 216 216 THR THR A . n A 1 92 GLN 92 217 217 GLN GLN A . n A 1 93 TYR 93 218 218 TYR TYR A . n A 1 94 GLU 94 219 219 GLU GLU A . n A 1 95 ARG 95 220 220 ARG ARG A . n A 1 96 GLU 96 221 221 GLU GLU A . n A 1 97 SER 97 222 222 SER SER A . n A 1 98 GLN 98 223 223 GLN GLN A . n A 1 99 ALA 99 224 ? ? ? A . n A 1 100 TYR 100 225 ? ? ? A . n A 1 101 TYR 101 226 ? ? ? A . n A 1 102 GLN 102 227 ? ? ? A . n A 1 103 ARG 103 228 ? ? ? A . n A 1 104 GLY 104 229 ? ? ? A . n A 1 105 SER 105 230 ? ? ? A . n A 1 106 SER 106 231 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD 1 300 300 CD CD A . C 3 CL 1 301 301 CL CL A . D 4 HOH 1 302 302 HOH HOH A . D 4 HOH 2 303 303 HOH HOH A . D 4 HOH 3 304 304 HOH HOH A . D 4 HOH 4 305 305 HOH HOH A . D 4 HOH 5 306 306 HOH HOH A . D 4 HOH 6 307 307 HOH HOH A . D 4 HOH 7 308 308 HOH HOH A . D 4 HOH 8 309 309 HOH HOH A . D 4 HOH 9 310 310 HOH HOH A . D 4 HOH 10 311 311 HOH HOH A . D 4 HOH 11 312 312 HOH HOH A . D 4 HOH 12 313 313 HOH HOH A . D 4 HOH 13 314 314 HOH HOH A . D 4 HOH 14 315 315 HOH HOH A . D 4 HOH 15 316 316 HOH HOH A . D 4 HOH 16 317 317 HOH HOH A . D 4 HOH 17 318 318 HOH HOH A . D 4 HOH 18 319 319 HOH HOH A . D 4 HOH 19 320 320 HOH HOH A . D 4 HOH 20 321 321 HOH HOH A . D 4 HOH 21 322 322 HOH HOH A . D 4 HOH 22 323 323 HOH HOH A . D 4 HOH 23 324 324 HOH HOH A . D 4 HOH 24 325 325 HOH HOH A . D 4 HOH 25 326 326 HOH HOH A . D 4 HOH 26 327 327 HOH HOH A . D 4 HOH 27 328 328 HOH HOH A . D 4 HOH 28 329 329 HOH HOH A . D 4 HOH 29 330 330 HOH HOH A . D 4 HOH 30 331 331 HOH HOH A . D 4 HOH 31 332 332 HOH HOH A . D 4 HOH 32 333 333 HOH HOH A . D 4 HOH 33 334 334 HOH HOH A . D 4 HOH 34 335 335 HOH HOH A . D 4 HOH 35 336 336 HOH HOH A . D 4 HOH 36 337 337 HOH HOH A . D 4 HOH 37 338 338 HOH HOH A . D 4 HOH 38 339 339 HOH HOH A . D 4 HOH 39 340 340 HOH HOH A . D 4 HOH 40 341 341 HOH HOH A . D 4 HOH 41 342 342 HOH HOH A . D 4 HOH 42 343 343 HOH HOH A . D 4 HOH 43 344 344 HOH HOH A . D 4 HOH 44 345 345 HOH HOH A . D 4 HOH 45 346 346 HOH HOH A . D 4 HOH 46 347 347 HOH HOH A . D 4 HOH 47 348 348 HOH HOH A . D 4 HOH 48 349 349 HOH HOH A . D 4 HOH 49 350 350 HOH HOH A . D 4 HOH 50 351 351 HOH HOH A . D 4 HOH 51 352 352 HOH HOH A . D 4 HOH 52 353 353 HOH HOH A . D 4 HOH 53 354 354 HOH HOH A . D 4 HOH 54 355 355 HOH HOH A . D 4 HOH 55 356 356 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D 2 1,3 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1080 ? 1 MORE -42 ? 1 'SSA (A^2)' 11710 ? 2 'ABSA (A^2)' 1900 ? 2 MORE -16 ? 2 'SSA (A^2)' 10630 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_775 -x+2,-y+5/2,z -1.0000000000 0.0000000000 0.0000000000 78.3180000000 0.0000000000 -1.0000000000 0.0000000000 144.1400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 8_576 x,-y+2,-z+3/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 115.3120000000 0.0000000000 0.0000000000 -1.0000000000 139.9725000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id CL _pdbx_struct_special_symmetry.auth_seq_id 301 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id CL _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 15 ? A HIS 140 ? 1_555 CD A B CD . ? A CD 300 ? 1_555 OD1 ? A ASP 22 ? A ASP 147 ? 1_555 149.2 ? 2 ND1 ? A HIS 15 ? A HIS 140 ? 1_555 CD A B CD . ? A CD 300 ? 1_555 OD2 ? A ASP 22 ? A ASP 147 ? 1_555 107.2 ? 3 OD1 ? A ASP 22 ? A ASP 147 ? 1_555 CD A B CD . ? A CD 300 ? 1_555 OD2 ? A ASP 22 ? A ASP 147 ? 1_555 55.0 ? 4 ND1 ? A HIS 15 ? A HIS 140 ? 1_555 CD A B CD . ? A CD 300 ? 1_555 O ? D HOH . ? A HOH 350 ? 1_555 100.1 ? 5 OD1 ? A ASP 22 ? A ASP 147 ? 1_555 CD A B CD . ? A CD 300 ? 1_555 O ? D HOH . ? A HOH 350 ? 1_555 99.6 ? 6 OD2 ? A ASP 22 ? A ASP 147 ? 1_555 CD A B CD . ? A CD 300 ? 1_555 O ? D HOH . ? A HOH 350 ? 1_555 77.2 ? 7 ND1 ? A HIS 15 ? A HIS 140 ? 1_555 CD B B CD . ? A CD 300 ? 1_555 OD1 ? A ASP 22 ? A ASP 147 ? 1_555 135.0 ? 8 ND1 ? A HIS 15 ? A HIS 140 ? 1_555 CD B B CD . ? A CD 300 ? 1_555 OD2 ? A ASP 22 ? A ASP 147 ? 1_555 93.4 ? 9 OD1 ? A ASP 22 ? A ASP 147 ? 1_555 CD B B CD . ? A CD 300 ? 1_555 OD2 ? A ASP 22 ? A ASP 147 ? 1_555 49.7 ? 10 ND1 ? A HIS 15 ? A HIS 140 ? 1_555 CD B B CD . ? A CD 300 ? 1_555 O B D HOH . ? A HOH 354 ? 1_555 104.2 ? 11 OD1 ? A ASP 22 ? A ASP 147 ? 1_555 CD B B CD . ? A CD 300 ? 1_555 O B D HOH . ? A HOH 354 ? 1_555 118.3 ? 12 OD2 ? A ASP 22 ? A ASP 147 ? 1_555 CD B B CD . ? A CD 300 ? 1_555 O B D HOH . ? A HOH 354 ? 1_555 159.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2021-10-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' pdbx_struct_special_symmetry 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 20 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 4 'Structure model' '_struct_ref_seq_dif.details' 33 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 34 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 35 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC 5.5.0066 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 EPMR . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 3HJX _pdbx_entry_details.sequence_details ;THE COMPLETE SEQUENCE OF THE PROTEIN USED FOR CRYSTALLIZATION WAS: GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYVLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSS. HOWEVER ACCORDING TO THE AUTHORS THERE IS A REASONABLE CHANCE THAT THE CRYSTAL CONTAINS A PROTEOLYZED VERSION. ONLY THE RESIDUES OBSERVED IN THE EXPERIMENT WERE INCLUDED IN THE SEQRES RECORDS. ; _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 MET _pdbx_validate_close_contact.auth_seq_id_1 166 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 168 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.95 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 ND1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HIS _pdbx_validate_symm_contact.auth_seq_id_1 177 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 CD _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 CD _pdbx_validate_symm_contact.auth_seq_id_2 300 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 A _pdbx_validate_symm_contact.site_symmetry_2 8_576 _pdbx_validate_symm_contact.dist 1.86 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 TYR _pdbx_validate_rmsd_angle.auth_seq_id_1 169 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 TYR _pdbx_validate_rmsd_angle.auth_seq_id_2 169 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 TYR _pdbx_validate_rmsd_angle.auth_seq_id_3 169 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 100.49 _pdbx_validate_rmsd_angle.angle_target_value 113.40 _pdbx_validate_rmsd_angle.angle_deviation -12.91 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 167 ? ? -55.23 48.70 2 1 TYR A 169 ? ? -2.17 73.92 3 1 ASN A 197 ? ? 52.09 -136.78 4 1 SER A 222 ? ? -43.49 109.91 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLU _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 168 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 TYR _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 169 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -113.20 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 193 ? A THR 68 2 1 Y 1 A LYS 194 ? A LYS 69 3 1 Y 1 A GLY 195 ? A GLY 70 4 1 Y 1 A ALA 224 ? A ALA 99 5 1 Y 1 A TYR 225 ? A TYR 100 6 1 Y 1 A TYR 226 ? A TYR 101 7 1 Y 1 A GLN 227 ? A GLN 102 8 1 Y 1 A ARG 228 ? A ARG 103 9 1 Y 1 A GLY 229 ? A GLY 104 10 1 Y 1 A SER 230 ? A SER 105 11 1 Y 1 A SER 231 ? A SER 106 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 'CHLORIDE ION' CL 4 water HOH #