HEADER SIGNALING PROTEIN 22-MAY-09 3HK0 TITLE CRYSTAL STRUCTURE OF THE RA AND PH DOMAINS OF GRB10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 10; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RAS-ASSOCIATING DOMAIN, PH DOMAIN, UNP RESIDUES 164-415; COMPND 5 SYNONYM: GRB10 ADAPTER PROTEIN, INSULIN RECEPTOR-BINDING PROTEIN GRB- COMPND 6 IR; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRB10, GRBIR, KIAA0207; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS GRB10, RA, PH, RAS-ASSOCIATING, PLECKSTRIN-HOMOLOGY, ADAPTER PROTEIN, KEYWDS 2 PHOSPHOPROTEIN, SH2 DOMAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.R.HUBBARD,R.S.DEPETRIS,J.WU REVDAT 5 21-FEB-24 3HK0 1 REMARK REVDAT 4 13-OCT-21 3HK0 1 REMARK SEQADV REVDAT 3 13-JUL-11 3HK0 1 VERSN REVDAT 2 18-AUG-09 3HK0 1 JRNL REVDAT 1 04-AUG-09 3HK0 0 JRNL AUTH R.S.DEPETRIS,J.WU,S.R.HUBBARD JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF THE RAS-ASSOCIATING AND JRNL TITL 2 PLECKSTRIN-HOMOLOGY DOMAINS OF GRB10 AND GRB14. JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 833 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19648926 JRNL DOI 10.1038/NSMB.1642 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 821 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1093 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.3610 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.4460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3525 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : 1.26000 REMARK 3 B33 (A**2) : -1.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.353 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.305 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.320 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3602 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4872 ; 1.059 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 5.460 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;33.935 ;23.395 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 608 ;18.158 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.279 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 548 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2691 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1463 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2396 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 118 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.073 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2221 ; 0.259 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3534 ; 0.493 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1381 ; 0.649 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1338 ; 1.070 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 351 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2716 11.5193 9.0437 REMARK 3 T TENSOR REMARK 3 T11: -0.1396 T22: 0.1030 REMARK 3 T33: -0.1728 T12: 0.0910 REMARK 3 T13: 0.0283 T23: 0.1074 REMARK 3 L TENSOR REMARK 3 L11: 2.9561 L22: 3.0737 REMARK 3 L33: 4.8329 L12: -0.3565 REMARK 3 L13: 1.2278 L23: 1.4143 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: -0.0158 S13: -0.1548 REMARK 3 S21: 0.0433 S22: -0.1949 S23: -0.0798 REMARK 3 S31: 0.4343 S32: 0.8280 S33: 0.0981 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 110 B 350 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1011 24.3085 28.8764 REMARK 3 T TENSOR REMARK 3 T11: 0.0634 T22: -0.0810 REMARK 3 T33: -0.0043 T12: 0.0526 REMARK 3 T13: 0.0927 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 7.0010 L22: 7.5015 REMARK 3 L33: 4.8068 L12: 0.1369 REMARK 3 L13: -2.7742 L23: -1.0484 REMARK 3 S TENSOR REMARK 3 S11: -0.3872 S12: -0.3044 S13: -0.3845 REMARK 3 S21: 0.5640 S22: 0.1865 S23: 0.9547 REMARK 3 S31: 0.2719 S32: -0.1442 S33: 0.2007 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HK0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16167 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : 0.32300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN AT 17 C IN HANGING REMARK 280 DROPS CONTAINING EQUAL VOLUMES OF PROTEIN SOLUTION AND RESERVOIR REMARK 280 BUFFER (~15% PEG 3350, 0.15 M SODIUM THIOCYANATE, AND 1 MM REMARK 280 DITHIOTHREITOL (DTT)), PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.43750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.44200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.43750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.44200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 102 REMARK 465 SER A 103 REMARK 465 HIS A 104 REMARK 465 MET A 105 REMARK 465 ALA A 106 REMARK 465 ALA A 107 REMARK 465 ALA A 108 REMARK 465 SER A 143 REMARK 465 HIS A 144 REMARK 465 SER A 145 REMARK 465 VAL A 146 REMARK 465 ASP A 147 REMARK 465 ASP A 148 REMARK 465 ASN A 149 REMARK 465 ASN A 216 REMARK 465 GLY A 217 REMARK 465 SER A 218 REMARK 465 GLN A 219 REMARK 465 THR A 220 REMARK 465 GLN A 221 REMARK 465 PRO A 352 REMARK 465 GLN A 353 REMARK 465 GLN A 354 REMARK 465 ARG A 355 REMARK 465 LYS A 356 REMARK 465 ALA A 357 REMARK 465 GLY B 102 REMARK 465 SER B 103 REMARK 465 HIS B 104 REMARK 465 MET B 105 REMARK 465 ALA B 106 REMARK 465 ALA B 107 REMARK 465 ALA B 108 REMARK 465 LYS B 109 REMARK 465 SER B 143 REMARK 465 HIS B 144 REMARK 465 SER B 145 REMARK 465 VAL B 146 REMARK 465 ASP B 147 REMARK 465 ASP B 148 REMARK 465 GLN B 213 REMARK 465 GLN B 214 REMARK 465 SER B 215 REMARK 465 ASN B 216 REMARK 465 GLY B 217 REMARK 465 SER B 218 REMARK 465 GLN B 219 REMARK 465 THR B 220 REMARK 465 GLN B 221 REMARK 465 THR B 265 REMARK 465 LYS B 266 REMARK 465 GLY B 267 REMARK 465 THR B 268 REMARK 465 SER B 269 REMARK 465 ALA B 270 REMARK 465 ALA B 271 REMARK 465 PRO B 272 REMARK 465 ARG B 273 REMARK 465 HIS B 274 REMARK 465 ILE B 351 REMARK 465 PRO B 352 REMARK 465 GLN B 353 REMARK 465 GLN B 354 REMARK 465 ARG B 355 REMARK 465 LYS B 356 REMARK 465 ALA B 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 VAL A 140 CG1 CG2 REMARK 470 SER A 150 OG REMARK 470 SER A 181 OG REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 ASN A 199 CG OD1 ND2 REMARK 470 MET A 201 CG SD CE REMARK 470 ASN A 202 CG OD1 ND2 REMARK 470 GLU A 206 CG CD OE1 OE2 REMARK 470 GLN A 207 CG CD OE1 NE2 REMARK 470 SER A 215 OG REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 GLN A 327 CG CD OE1 NE2 REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 GLU B 117 CG CD OE1 OE2 REMARK 470 VAL B 140 CG1 CG2 REMARK 470 ASN B 149 CG OD1 ND2 REMARK 470 SER B 150 OG REMARK 470 GLU B 176 CG CD OE1 OE2 REMARK 470 SER B 181 OG REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 ASN B 199 CG OD1 ND2 REMARK 470 ASN B 202 CG OD1 ND2 REMARK 470 GLU B 206 CG CD OE1 OE2 REMARK 470 GLN B 207 CG CD OE1 NE2 REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 GLN B 276 CG CD OE1 NE2 REMARK 470 LYS B 294 CG CD CE NZ REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 LYS B 316 CG CD CE NZ REMARK 470 GLN B 327 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 253 CG TYR B 253 CD2 0.118 REMARK 500 TYR B 253 CE1 TYR B 253 CZ 0.104 REMARK 500 TYR B 253 CZ TYR B 253 CE2 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR B 253 CZ - CE2 - CD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 141 75.22 -69.12 REMARK 500 GLN A 207 19.84 57.64 REMARK 500 GLN A 213 31.33 38.18 REMARK 500 HIS A 302 59.86 -107.75 REMARK 500 ASN B 199 83.19 -152.77 REMARK 500 LYS B 247 47.28 -97.10 REMARK 500 ARG B 312 -61.25 -121.28 REMARK 500 THR B 315 -22.85 -140.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 15 DBREF 3HK0 A 106 357 UNP Q13322 GRB10_HUMAN 164 415 DBREF 3HK0 B 106 357 UNP Q13322 GRB10_HUMAN 164 415 SEQADV 3HK0 GLY A 102 UNP Q13322 EXPRESSION TAG SEQADV 3HK0 SER A 103 UNP Q13322 EXPRESSION TAG SEQADV 3HK0 HIS A 104 UNP Q13322 EXPRESSION TAG SEQADV 3HK0 MET A 105 UNP Q13322 EXPRESSION TAG SEQADV 3HK0 SER A 145 UNP Q13322 CYS 203 ENGINEERED MUTATION SEQADV 3HK0 SER A 212 UNP Q13322 CYS 270 ENGINEERED MUTATION SEQADV 3HK0 SER A 232 UNP Q13322 CYS 290 ENGINEERED MUTATION SEQADV 3HK0 ALA A 270 UNP Q13322 LYS 328 ENGINEERED MUTATION SEQADV 3HK0 ALA A 271 UNP Q13322 GLU 329 ENGINEERED MUTATION SEQADV 3HK0 SER A 331 UNP Q13322 CYS 389 ENGINEERED MUTATION SEQADV 3HK0 GLY B 102 UNP Q13322 EXPRESSION TAG SEQADV 3HK0 SER B 103 UNP Q13322 EXPRESSION TAG SEQADV 3HK0 HIS B 104 UNP Q13322 EXPRESSION TAG SEQADV 3HK0 MET B 105 UNP Q13322 EXPRESSION TAG SEQADV 3HK0 SER B 145 UNP Q13322 CYS 203 ENGINEERED MUTATION SEQADV 3HK0 SER B 212 UNP Q13322 CYS 270 ENGINEERED MUTATION SEQADV 3HK0 SER B 232 UNP Q13322 CYS 290 ENGINEERED MUTATION SEQADV 3HK0 ALA B 270 UNP Q13322 LYS 328 ENGINEERED MUTATION SEQADV 3HK0 ALA B 271 UNP Q13322 GLU 329 ENGINEERED MUTATION SEQADV 3HK0 SER B 331 UNP Q13322 CYS 389 ENGINEERED MUTATION SEQRES 1 A 256 GLY SER HIS MET ALA ALA ALA LYS GLN ASP VAL LYS VAL SEQRES 2 A 256 PHE SER GLU ASP GLY THR SER LYS VAL VAL GLU ILE LEU SEQRES 3 A 256 ALA ASP MET THR ALA ARG ASP LEU CYS GLN LEU LEU VAL SEQRES 4 A 256 TYR LYS SER HIS SER VAL ASP ASP ASN SER TRP THR LEU SEQRES 5 A 256 VAL GLU HIS HIS PRO HIS LEU GLY LEU GLU ARG CYS LEU SEQRES 6 A 256 GLU ASP HIS GLU LEU VAL VAL GLN VAL GLU SER THR MET SEQRES 7 A 256 ALA SER GLU SER LYS PHE LEU PHE ARG LYS ASN TYR ALA SEQRES 8 A 256 LYS TYR GLU PHE PHE LYS ASN PRO MET ASN PHE PHE PRO SEQRES 9 A 256 GLU GLN MET VAL THR TRP SER GLN GLN SER ASN GLY SER SEQRES 10 A 256 GLN THR GLN LEU LEU GLN ASN PHE LEU ASN SER SER SER SEQRES 11 A 256 SER PRO GLU ILE GLN GLY PHE LEU HIS VAL LYS GLU LEU SEQRES 12 A 256 GLY LYS LYS SER TRP LYS LYS LEU TYR VAL CYS LEU ARG SEQRES 13 A 256 ARG SER GLY LEU TYR CYS SER THR LYS GLY THR SER ALA SEQRES 14 A 256 ALA PRO ARG HIS LEU GLN LEU LEU ALA ASP LEU GLU ASP SEQRES 15 A 256 SER ASN ILE PHE SER LEU ILE ALA GLY ARG LYS GLN TYR SEQRES 16 A 256 ASN ALA PRO THR ASP HIS GLY LEU CYS ILE LYS PRO ASN SEQRES 17 A 256 LYS VAL ARG ASN GLU THR LYS GLU LEU ARG LEU LEU CYS SEQRES 18 A 256 ALA GLU ASP GLU GLN THR ARG THR SER TRP MET THR ALA SEQRES 19 A 256 PHE ARG LEU LEU LYS TYR GLY MET LEU LEU TYR GLN ASN SEQRES 20 A 256 TYR ARG ILE PRO GLN GLN ARG LYS ALA SEQRES 1 B 256 GLY SER HIS MET ALA ALA ALA LYS GLN ASP VAL LYS VAL SEQRES 2 B 256 PHE SER GLU ASP GLY THR SER LYS VAL VAL GLU ILE LEU SEQRES 3 B 256 ALA ASP MET THR ALA ARG ASP LEU CYS GLN LEU LEU VAL SEQRES 4 B 256 TYR LYS SER HIS SER VAL ASP ASP ASN SER TRP THR LEU SEQRES 5 B 256 VAL GLU HIS HIS PRO HIS LEU GLY LEU GLU ARG CYS LEU SEQRES 6 B 256 GLU ASP HIS GLU LEU VAL VAL GLN VAL GLU SER THR MET SEQRES 7 B 256 ALA SER GLU SER LYS PHE LEU PHE ARG LYS ASN TYR ALA SEQRES 8 B 256 LYS TYR GLU PHE PHE LYS ASN PRO MET ASN PHE PHE PRO SEQRES 9 B 256 GLU GLN MET VAL THR TRP SER GLN GLN SER ASN GLY SER SEQRES 10 B 256 GLN THR GLN LEU LEU GLN ASN PHE LEU ASN SER SER SER SEQRES 11 B 256 SER PRO GLU ILE GLN GLY PHE LEU HIS VAL LYS GLU LEU SEQRES 12 B 256 GLY LYS LYS SER TRP LYS LYS LEU TYR VAL CYS LEU ARG SEQRES 13 B 256 ARG SER GLY LEU TYR CYS SER THR LYS GLY THR SER ALA SEQRES 14 B 256 ALA PRO ARG HIS LEU GLN LEU LEU ALA ASP LEU GLU ASP SEQRES 15 B 256 SER ASN ILE PHE SER LEU ILE ALA GLY ARG LYS GLN TYR SEQRES 16 B 256 ASN ALA PRO THR ASP HIS GLY LEU CYS ILE LYS PRO ASN SEQRES 17 B 256 LYS VAL ARG ASN GLU THR LYS GLU LEU ARG LEU LEU CYS SEQRES 18 B 256 ALA GLU ASP GLU GLN THR ARG THR SER TRP MET THR ALA SEQRES 19 B 256 PHE ARG LEU LEU LYS TYR GLY MET LEU LEU TYR GLN ASN SEQRES 20 B 256 TYR ARG ILE PRO GLN GLN ARG LYS ALA HET SCN A 15 3 HETNAM SCN THIOCYANATE ION FORMUL 3 SCN C N S 1- FORMUL 4 HOH *14(H2 O) HELIX 1 1 THR A 131 TYR A 141 1 11 HELIX 2 2 LEU A 171 THR A 178 1 8 HELIX 3 3 TYR A 194 ASN A 199 1 6 HELIX 4 4 PRO A 200 PHE A 203 5 4 HELIX 5 5 LEU A 222 ASN A 228 1 7 HELIX 6 6 ALA A 271 ARG A 273 5 3 HELIX 7 7 GLY A 292 ASN A 297 1 6 HELIX 8 8 ASP A 325 GLY A 342 1 18 HELIX 9 9 GLY A 342 ARG A 350 1 9 HELIX 10 10 THR B 131 TYR B 141 1 11 HELIX 11 11 LEU B 171 THR B 178 1 8 HELIX 12 12 TYR B 194 ASN B 199 1 6 HELIX 13 13 LEU B 222 ASN B 228 1 7 HELIX 14 14 ASP B 325 GLY B 342 1 18 HELIX 15 15 GLY B 342 ARG B 350 1 9 SHEET 1 A10 SER A 121 ILE A 126 0 SHEET 2 A10 GLN A 110 SER A 116 -1 N GLN A 110 O ILE A 126 SHEET 3 A10 LYS A 184 LYS A 189 1 O PHE A 185 N PHE A 115 SHEET 4 A10 TRP A 151 HIS A 157 -1 N HIS A 156 O LYS A 184 SHEET 5 A10 LEU A 162 CYS A 165 -1 O ARG A 164 N GLU A 155 SHEET 6 A10 SER A 284 LEU A 289 -1 O SER A 288 N GLU A 163 SHEET 7 A10 HIS A 302 PRO A 308 -1 O CYS A 305 N PHE A 287 SHEET 8 A10 ARG A 319 ALA A 323 -1 O ALA A 323 N HIS A 302 SHEET 9 A10 PRO A 233 LYS A 242 -1 N HIS A 240 O CYS A 322 SHEET 10 A10 VAL A 209 TRP A 211 -1 N THR A 210 O GLU A 234 SHEET 1 B12 SER A 121 ILE A 126 0 SHEET 2 B12 GLN A 110 SER A 116 -1 N GLN A 110 O ILE A 126 SHEET 3 B12 LYS A 184 LYS A 189 1 O PHE A 185 N PHE A 115 SHEET 4 B12 TRP A 151 HIS A 157 -1 N HIS A 156 O LYS A 184 SHEET 5 B12 LEU A 162 CYS A 165 -1 O ARG A 164 N GLU A 155 SHEET 6 B12 SER A 284 LEU A 289 -1 O SER A 288 N GLU A 163 SHEET 7 B12 HIS A 302 PRO A 308 -1 O CYS A 305 N PHE A 287 SHEET 8 B12 ARG A 319 ALA A 323 -1 O ALA A 323 N HIS A 302 SHEET 9 B12 PRO A 233 LYS A 242 -1 N HIS A 240 O CYS A 322 SHEET 10 B12 TRP A 249 ARG A 257 -1 O VAL A 254 N GLY A 237 SHEET 11 B12 GLY A 260 SER A 264 -1 O TYR A 262 N CYS A 255 SHEET 12 B12 LEU A 275 ALA A 279 -1 O LEU A 278 N LEU A 261 SHEET 1 C10 SER B 121 GLU B 125 0 SHEET 2 C10 ASP B 111 SER B 116 -1 N VAL B 112 O VAL B 124 SHEET 3 C10 LYS B 184 LYS B 189 1 O PHE B 185 N PHE B 115 SHEET 4 C10 TRP B 151 HIS B 157 -1 N THR B 152 O ARG B 188 SHEET 5 C10 LEU B 162 CYS B 165 -1 O ARG B 164 N GLU B 155 SHEET 6 C10 SER B 284 LEU B 289 -1 O SER B 288 N GLU B 163 SHEET 7 C10 GLY B 303 PRO B 308 -1 O CYS B 305 N PHE B 287 SHEET 8 C10 LEU B 320 CYS B 322 -1 O LEU B 321 N LEU B 304 SHEET 9 C10 GLU B 234 LYS B 242 -1 N LYS B 242 O LEU B 320 SHEET 10 C10 VAL B 209 THR B 210 -1 N THR B 210 O GLU B 234 SHEET 1 D12 SER B 121 GLU B 125 0 SHEET 2 D12 ASP B 111 SER B 116 -1 N VAL B 112 O VAL B 124 SHEET 3 D12 LYS B 184 LYS B 189 1 O PHE B 185 N PHE B 115 SHEET 4 D12 TRP B 151 HIS B 157 -1 N THR B 152 O ARG B 188 SHEET 5 D12 LEU B 162 CYS B 165 -1 O ARG B 164 N GLU B 155 SHEET 6 D12 SER B 284 LEU B 289 -1 O SER B 288 N GLU B 163 SHEET 7 D12 GLY B 303 PRO B 308 -1 O CYS B 305 N PHE B 287 SHEET 8 D12 LEU B 320 CYS B 322 -1 O LEU B 321 N LEU B 304 SHEET 9 D12 GLU B 234 LYS B 242 -1 N LYS B 242 O LEU B 320 SHEET 10 D12 TRP B 249 ARG B 257 -1 O LEU B 256 N ILE B 235 SHEET 11 D12 GLY B 260 CYS B 263 -1 O TYR B 262 N CYS B 255 SHEET 12 D12 GLN B 276 ALA B 279 -1 O ALA B 279 N LEU B 261 SITE 1 AC1 4 LYS A 193 PHE A 197 THR A 334 ARG A 337 CRYST1 126.875 48.884 92.217 90.00 114.14 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007882 0.000000 0.003532 0.00000 SCALE2 0.000000 0.020457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011883 0.00000