HEADER TRANSFERASE 26-MAY-09 3HKV TITLE HUMAN POLY(ADP-RIBOSE) POLYMERASE 10, CATALYTIC FRAGMENT IN COMPLEX TITLE 2 WITH AN INHIBITOR 3-AMINOBENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE 10; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 809-1017; COMPND 5 SYNONYM: PARP-10; COMPND 6 EC: 2.4.2.30; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CH KEYWDS PARP, POLY(ADP-RIBOSE) POLYMERASE, NAD, TRANSFERASE, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, CYTOPLASM, KEYWDS 3 GLYCOSYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,M.MOCHE,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,R.COLLINS, AUTHOR 2 A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM,A.JOHANSSON, AUTHOR 3 I.JOHANSSON,T.KOTENYOVA,A.KOTZSCH,T.K.NIELSEN,P.NORDLUND,T.NYMAN, AUTHOR 4 C.PERSSON,A.K.ROOS,J.SAGEMARK,P.SCHUTZ,M.I.SIPONEN,A.G.THORSELL, AUTHOR 5 L.TRESAUGUES,S.VAN DEN BERG,J.WEIGELT,M.WELIN,M.WISNIEWSKA, AUTHOR 6 H.SCHULER,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 01-NOV-23 3HKV 1 REMARK REVDAT 3 10-NOV-21 3HKV 1 REMARK SEQADV LINK REVDAT 2 23-MAY-18 3HKV 1 REMARK REVDAT 1 16-JUN-09 3HKV 0 JRNL AUTH T.KARLBERG,M.MOCHE,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA, JRNL AUTH 2 R.COLLINS,A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND, JRNL AUTH 3 M.HAMMARSTROM,A.JOHANSSON,I.JOHANSSON,T.KOTENYOVA,A.KOTZSCH, JRNL AUTH 4 T.K.NIELSEN,P.NORDLUND,T.NYMAN,C.PERSSON,A.K.ROOS, JRNL AUTH 5 J.SAGEMARK,P.SCHUTZ,M.I.SIPONEN,A.G.THORSELL,L.TRESAUGUES, JRNL AUTH 6 S.VAN DEN BERG,J.WEIGELT,M.WELIN,M.WISNIEWSKA,H.SCHULER JRNL TITL HUMAN POLY(ADP-RIBOSE) POLYMERASE 10, CATALYTIC FRAGMENT IN JRNL TITL 2 COMPLEX WITH AN INHIBITOR 3-AMINOBENZAMIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0035 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1730 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -2.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.189 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3196 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2245 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4343 ; 1.506 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5355 ; 0.917 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 5.882 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;29.760 ;21.557 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 504 ;16.172 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;19.866 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3614 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 734 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1923 ; 0.986 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 770 ; 0.214 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3110 ; 1.883 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1273 ; 2.691 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1229 ; 4.628 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : RH-COATED SI MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34589 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.08900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.72200 REMARK 200 R SYM FOR SHELL (I) : 0.42800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3BLJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.49M NAH2PO4, 0.9M K2HPO4, PH7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.58000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.69000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.69000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.29000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.69000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.69000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.87000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.69000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.69000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.29000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.69000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.69000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.87000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.58000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 808 REMARK 465 ALA A 809 REMARK 465 GLY A 810 REMARK 465 GLN A 811 REMARK 465 THR A 812 REMARK 465 LEU A 813 REMARK 465 LYS A 814 REMARK 465 GLY A 815 REMARK 465 PRO A 816 REMARK 465 ARG A 1009 REMARK 465 ALA A 1010 REMARK 465 SER A 1011 REMARK 465 PRO A 1012 REMARK 465 ASP A 1013 REMARK 465 ASP A 1014 REMARK 465 PRO A 1015 REMARK 465 SER A 1016 REMARK 465 GLY A 1017 REMARK 465 ALA A 1018 REMARK 465 HIS A 1019 REMARK 465 HIS A 1020 REMARK 465 HIS A 1021 REMARK 465 HIS A 1022 REMARK 465 HIS A 1023 REMARK 465 HIS A 1024 REMARK 465 MET B 808 REMARK 465 ALA B 809 REMARK 465 GLY B 810 REMARK 465 GLN B 811 REMARK 465 THR B 812 REMARK 465 LEU B 813 REMARK 465 LYS B 814 REMARK 465 GLY B 815 REMARK 465 PRO B 816 REMARK 465 TRP B 817 REMARK 465 ARG B 1009 REMARK 465 ALA B 1010 REMARK 465 SER B 1011 REMARK 465 PRO B 1012 REMARK 465 ASP B 1013 REMARK 465 ASP B 1014 REMARK 465 PRO B 1015 REMARK 465 SER B 1016 REMARK 465 GLY B 1017 REMARK 465 ALA B 1018 REMARK 465 HIS B 1019 REMARK 465 HIS B 1020 REMARK 465 HIS B 1021 REMARK 465 HIS B 1022 REMARK 465 HIS B 1023 REMARK 465 HIS B 1024 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 52 O HOH B 130 3555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 826 57.07 -95.76 REMARK 500 ASP A 842 -132.58 57.68 REMARK 500 ALA A 911 -178.41 -66.04 REMARK 500 GLN A 984 63.72 61.47 REMARK 500 ASP B 842 -122.56 54.90 REMARK 500 GLN B 984 70.59 44.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 5 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 61 O REMARK 620 2 HOH A 144 O 101.9 REMARK 620 3 GLY A 967 O 84.3 150.1 REMARK 620 4 LEU A 972 O 90.0 88.6 120.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 4 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 12 O REMARK 620 2 HOH B 162 O 99.0 REMARK 620 3 GLY B 967 O 82.2 163.0 REMARK 620 4 HIS B 970 O 159.8 99.5 82.6 REMARK 620 5 LEU B 972 O 89.9 79.9 117.1 85.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3AB A 1025 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3AB B 1 DBREF 3HKV A 809 1017 UNP Q53GL7 PAR10_HUMAN 809 1017 DBREF 3HKV B 809 1017 UNP Q53GL7 PAR10_HUMAN 809 1017 SEQADV 3HKV MET A 808 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV LYS A 922 UNP Q53GL7 ARG 922 ENGINEERED MUTATION SEQADV 3HKV MET A 979 UNP Q53GL7 VAL 979 ENGINEERED MUTATION SEQADV 3HKV ALA A 1018 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV HIS A 1019 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV HIS A 1020 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV HIS A 1021 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV HIS A 1022 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV HIS A 1023 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV HIS A 1024 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV MET B 808 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV LYS B 922 UNP Q53GL7 ARG 922 ENGINEERED MUTATION SEQADV 3HKV MET B 979 UNP Q53GL7 VAL 979 ENGINEERED MUTATION SEQADV 3HKV ALA B 1018 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV HIS B 1019 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV HIS B 1020 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV HIS B 1021 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV HIS B 1022 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV HIS B 1023 UNP Q53GL7 EXPRESSION TAG SEQADV 3HKV HIS B 1024 UNP Q53GL7 EXPRESSION TAG SEQRES 1 A 217 MET ALA GLY GLN THR LEU LYS GLY PRO TRP ASN ASN LEU SEQRES 2 A 217 GLU ARG LEU ALA GLU ASN THR GLY GLU PHE GLN GLU VAL SEQRES 3 A 217 VAL ARG ALA PHE TYR ASP THR LEU ASP ALA ALA ARG SER SEQRES 4 A 217 SER ILE ARG VAL VAL ARG VAL GLU ARG VAL SER HIS PRO SEQRES 5 A 217 LEU LEU GLN GLN GLN TYR GLU LEU TYR ARG GLU ARG LEU SEQRES 6 A 217 LEU GLN ARG CYS GLU ARG ARG PRO VAL GLU GLN VAL LEU SEQRES 7 A 217 TYR HIS GLY THR THR ALA PRO ALA VAL PRO ASP ILE CYS SEQRES 8 A 217 ALA HIS GLY PHE ASN ARG SER PHE CYS GLY ARG ASN ALA SEQRES 9 A 217 THR VAL TYR GLY LYS GLY VAL TYR PHE ALA LYS ARG ALA SEQRES 10 A 217 SER LEU SER VAL GLN ASP ARG TYR SER PRO PRO ASN ALA SEQRES 11 A 217 ASP GLY HIS LYS ALA VAL PHE VAL ALA ARG VAL LEU THR SEQRES 12 A 217 GLY ASP TYR GLY GLN GLY ARG ARG GLY LEU ARG ALA PRO SEQRES 13 A 217 PRO LEU ARG GLY PRO GLY HIS VAL LEU LEU ARG TYR ASP SEQRES 14 A 217 SER ALA MET ASP CYS ILE CYS GLN PRO SER ILE PHE VAL SEQRES 15 A 217 ILE PHE HIS ASP THR GLN ALA LEU PRO THR HIS LEU ILE SEQRES 16 A 217 THR CYS GLU HIS VAL PRO ARG ALA SER PRO ASP ASP PRO SEQRES 17 A 217 SER GLY ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 217 MET ALA GLY GLN THR LEU LYS GLY PRO TRP ASN ASN LEU SEQRES 2 B 217 GLU ARG LEU ALA GLU ASN THR GLY GLU PHE GLN GLU VAL SEQRES 3 B 217 VAL ARG ALA PHE TYR ASP THR LEU ASP ALA ALA ARG SER SEQRES 4 B 217 SER ILE ARG VAL VAL ARG VAL GLU ARG VAL SER HIS PRO SEQRES 5 B 217 LEU LEU GLN GLN GLN TYR GLU LEU TYR ARG GLU ARG LEU SEQRES 6 B 217 LEU GLN ARG CYS GLU ARG ARG PRO VAL GLU GLN VAL LEU SEQRES 7 B 217 TYR HIS GLY THR THR ALA PRO ALA VAL PRO ASP ILE CYS SEQRES 8 B 217 ALA HIS GLY PHE ASN ARG SER PHE CYS GLY ARG ASN ALA SEQRES 9 B 217 THR VAL TYR GLY LYS GLY VAL TYR PHE ALA LYS ARG ALA SEQRES 10 B 217 SER LEU SER VAL GLN ASP ARG TYR SER PRO PRO ASN ALA SEQRES 11 B 217 ASP GLY HIS LYS ALA VAL PHE VAL ALA ARG VAL LEU THR SEQRES 12 B 217 GLY ASP TYR GLY GLN GLY ARG ARG GLY LEU ARG ALA PRO SEQRES 13 B 217 PRO LEU ARG GLY PRO GLY HIS VAL LEU LEU ARG TYR ASP SEQRES 14 B 217 SER ALA MET ASP CYS ILE CYS GLN PRO SER ILE PHE VAL SEQRES 15 B 217 ILE PHE HIS ASP THR GLN ALA LEU PRO THR HIS LEU ILE SEQRES 16 B 217 THR CYS GLU HIS VAL PRO ARG ALA SER PRO ASP ASP PRO SEQRES 17 B 217 SER GLY ALA HIS HIS HIS HIS HIS HIS HET PO4 A 1 5 HET PO4 A 2 5 HET PO4 A 3 5 HET NA A 5 1 HET 3AB A1025 10 HET NA B 4 1 HET 3AB B 1 10 HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION HETNAM 3AB 3-AMINOBENZAMIDE FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 NA 2(NA 1+) FORMUL 7 3AB 2(C7 H8 N2 O) FORMUL 10 HOH *183(H2 O) HELIX 1 1 THR A 827 THR A 840 1 14 HELIX 2 2 LEU A 841 SER A 846 5 6 HELIX 3 3 HIS A 858 CYS A 876 1 19 HELIX 4 4 THR A 890 PRO A 892 5 3 HELIX 5 5 ALA A 893 GLY A 901 1 9 HELIX 6 6 ARG A 923 VAL A 928 1 6 HELIX 7 7 THR B 827 THR B 840 1 14 HELIX 8 8 LEU B 841 SER B 846 5 6 HELIX 9 9 HIS B 858 CYS B 876 1 19 HELIX 10 10 PRO B 892 GLY B 901 1 10 HELIX 11 11 ARG B 923 VAL B 928 1 6 SHEET 1 A 5 LEU A 820 ARG A 822 0 SHEET 2 A 5 ILE A 848 VAL A 856 -1 O ARG A 855 N GLU A 821 SHEET 3 A 5 ALA A 996 HIS A1006 -1 O GLU A1005 N ARG A 849 SHEET 4 A 5 HIS A 940 LEU A 949 -1 N LYS A 941 O CYS A1004 SHEET 5 A 5 GLU A 882 THR A 889 -1 N LEU A 885 O ALA A 946 SHEET 1 B 4 VAL A 918 ALA A 921 0 SHEET 2 B 4 ILE A 987 ILE A 990 -1 O ILE A 990 N VAL A 918 SHEET 3 B 4 SER A 977 MET A 979 -1 N ALA A 978 O VAL A 989 SHEET 4 B 4 TYR A 953 GLN A 955 1 N GLY A 954 O MET A 979 SHEET 1 C 5 LEU B 820 ARG B 822 0 SHEET 2 C 5 ILE B 848 VAL B 856 -1 O ARG B 855 N GLU B 821 SHEET 3 C 5 ALA B 996 HIS B1006 -1 O GLU B1005 N ARG B 849 SHEET 4 C 5 LYS B 941 VAL B 948 -1 N LYS B 941 O CYS B1004 SHEET 5 C 5 GLN B 883 THR B 889 -1 N HIS B 887 O PHE B 944 SHEET 1 D 4 VAL B 918 ALA B 921 0 SHEET 2 D 4 ILE B 987 ILE B 990 -1 O ILE B 990 N VAL B 918 SHEET 3 D 4 SER B 977 MET B 979 -1 N ALA B 978 O VAL B 989 SHEET 4 D 4 TYR B 953 GLN B 955 1 N GLY B 954 O SER B 977 LINK NA NA A 5 O HOH A 61 1555 1555 2.87 LINK NA NA A 5 O HOH A 144 1555 1555 2.74 LINK NA NA A 5 O GLY A 967 1555 1555 2.94 LINK NA NA A 5 O LEU A 972 1555 1555 2.89 LINK NA NA B 4 O HOH B 12 1555 1555 2.84 LINK NA NA B 4 O HOH B 162 1555 1555 2.75 LINK NA NA B 4 O GLY B 967 1555 1555 2.79 LINK NA NA B 4 O HIS B 970 1555 1555 2.80 LINK NA NA B 4 O LEU B 972 1555 1555 2.69 CISPEP 1 ARG A 879 PRO A 880 0 -3.49 CISPEP 2 ARG B 879 PRO B 880 0 0.61 SITE 1 AC1 6 HOH A 48 ARG A 904 LYS A 916 ARG A 961 SITE 2 AC1 6 ARG B 904 ARG B 961 SITE 1 AC2 4 ARG A 852 ASN A 936 ASP A 938 HIS A 940 SITE 1 AC3 7 HOH A 26 CYS A 876 GLU A 877 ARG A 878 SITE 2 AC3 7 ASP A 952 HOH B 78 GLU B 877 SITE 1 AC4 5 HOH A 61 HOH A 144 GLY A 967 HIS A 970 SITE 2 AC4 5 LEU A 972 SITE 1 AC5 7 HIS A 887 GLY A 888 ALA A 911 TYR A 919 SITE 2 AC5 7 LEU A 926 SER A 927 TYR A 932 SITE 1 AC6 5 HOH B 12 HOH B 162 GLY B 967 HIS B 970 SITE 2 AC6 5 LEU B 972 SITE 1 AC7 5 HIS B 887 GLY B 888 TYR B 919 SER B 927 SITE 2 AC7 5 TYR B 932 CRYST1 97.380 97.380 121.160 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010269 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010269 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008254 0.00000