HEADER FLAVOPROTEIN 28-MAY-09 3HLY TITLE CRYSTAL STRUCTURE OF THE FLAVODOXIN-LIKE DOMAIN FROM SYNECHOCOCCUS SP TITLE 2 Q5MZP6_SYNP6 PROTEIN. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 SNR135D. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVODOXIN-LIKE DOMAIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 262-414; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS PCC 6301; SOURCE 3 ORGANISM_COMMON: ANACYSTIS NIDULANS; SOURCE 4 ORGANISM_TAXID: 269084; SOURCE 5 STRAIN: ATCC 27144/PCC 6301/SAUG 1402/1; SOURCE 6 GENE: DFA1, SYC2284_C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) + MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET 21-23C KEYWDS Q5MZP6_SYNP6, FLAVOPROTEIN, FLAVODOXIN-LIKE DOMAIN, DFA1, SNR135D, KEYWDS 2 NESG, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM EXPDTA X-RAY DIFFRACTION AUTHOR S.VOROBIEV,M.SU,D.LEE,C.CICCOSANTI,S.SAHDEV,R.XIAO,T.B.ACTON, AUTHOR 2 G.T.MONTELIONE,L.TONG,J.F.HUNT,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 2 25-OCT-17 3HLY 1 REMARK REVDAT 1 09-JUN-09 3HLY 0 JRNL AUTH S.VOROBIEV,M.SU,D.LEE,C.CICCOSANTI,S.SAHDEV,R.XIAO, JRNL AUTH 2 T.B.ACTON,G.T.MONTELIONE,L.TONG,J.F.HUNT JRNL TITL CRYSTAL STRUCTURE OF THE FLAVODOXIN-LIKE DOMAIN FROM JRNL TITL 2 SYNECHOCOCCUS SP. Q5MZP6_SYNP6 PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.180 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 32535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9403 - 5.4932 0.89 2338 126 0.2169 0.2112 REMARK 3 2 5.4932 - 4.3634 0.99 2649 117 0.1755 0.1805 REMARK 3 3 4.3634 - 3.8127 1.00 2593 139 0.1957 0.1918 REMARK 3 4 3.8127 - 3.4645 0.87 2311 130 0.2106 0.2509 REMARK 3 5 3.4645 - 3.2164 1.00 2641 154 0.2198 0.2339 REMARK 3 6 3.2164 - 3.0269 1.00 2640 123 0.2589 0.3075 REMARK 3 7 3.0269 - 2.8754 1.00 2651 120 0.2591 0.3201 REMARK 3 8 2.8754 - 2.7503 1.00 2645 139 0.2671 0.3216 REMARK 3 9 2.7503 - 2.6445 1.00 2597 153 0.2620 0.3354 REMARK 3 10 2.6445 - 2.5533 1.00 2618 149 0.2346 0.2822 REMARK 3 11 2.5533 - 2.4735 1.00 2609 144 0.2318 0.2501 REMARK 3 12 2.4735 - 2.4028 0.98 2596 153 0.2576 0.2410 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 55.15 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.970 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : 17.515 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 48.8994 47.3911 47.3820 REMARK 3 T TENSOR REMARK 3 T11: 0.1165 T22: 0.1278 REMARK 3 T33: 0.1519 T12: 0.0117 REMARK 3 T13: -0.0211 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.3599 L22: 2.0860 REMARK 3 L33: 4.4738 L12: 1.0869 REMARK 3 L13: -0.9205 L23: -0.1538 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: 0.1567 S13: -0.0083 REMARK 3 S21: 0.0538 S22: 0.1538 S23: -0.1584 REMARK 3 S31: 0.3962 S32: -0.1254 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 15.1705 51.8038 47.5658 REMARK 3 T TENSOR REMARK 3 T11: 0.1203 T22: 0.1858 REMARK 3 T33: 0.1840 T12: 0.0045 REMARK 3 T13: 0.0135 T23: 0.0834 REMARK 3 L TENSOR REMARK 3 L11: 0.7585 L22: 1.6200 REMARK 3 L33: 3.7673 L12: -0.2468 REMARK 3 L13: 1.0034 L23: -0.2360 REMARK 3 S TENSOR REMARK 3 S11: -0.1967 S12: 0.5077 S13: -0.1075 REMARK 3 S21: 0.3204 S22: -0.0715 S23: -0.0964 REMARK 3 S31: -0.4085 S32: -0.0968 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 54.6299 69.7514 35.7112 REMARK 3 T TENSOR REMARK 3 T11: 0.4736 T22: 0.1329 REMARK 3 T33: 0.1701 T12: -0.0441 REMARK 3 T13: 0.2136 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 0.8150 L22: 1.6178 REMARK 3 L33: 2.8100 L12: -0.5914 REMARK 3 L13: -0.1448 L23: 0.7957 REMARK 3 S TENSOR REMARK 3 S11: 0.5144 S12: -0.0489 S13: 0.0144 REMARK 3 S21: -0.3973 S22: -0.0805 S23: -0.0953 REMARK 3 S31: -0.7893 S32: 0.0685 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786, 0.97917, 0.91837 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32571 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.16800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXDE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.1M CA ACETATE, 0.1M REMARK 280 MES, PH 6.0, MICROBATCH UNDER PARAFFIN OIL , TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.03800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.03800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.13500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.94950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.13500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.94950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.03800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.13500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.94950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.03800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.13500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.94950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER ACCORDING TO GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 261 REMARK 465 ALA A 407 REMARK 465 ILE A 408 REMARK 465 GLN A 409 REMARK 465 THR A 410 REMARK 465 MSE A 411 REMARK 465 LYS A 412 REMARK 465 SER A 413 REMARK 465 LEU A 414 REMARK 465 GLU A 415 REMARK 465 HIS A 416 REMARK 465 HIS A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 MSE B 261 REMARK 465 ASP B 406 REMARK 465 ALA B 407 REMARK 465 ILE B 408 REMARK 465 GLN B 409 REMARK 465 THR B 410 REMARK 465 MSE B 411 REMARK 465 LYS B 412 REMARK 465 SER B 413 REMARK 465 LEU B 414 REMARK 465 GLU B 415 REMARK 465 HIS B 416 REMARK 465 HIS B 417 REMARK 465 HIS B 418 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 MSE C 261 REMARK 465 GLU C 415 REMARK 465 HIS C 416 REMARK 465 HIS C 417 REMARK 465 HIS C 418 REMARK 465 HIS C 419 REMARK 465 HIS C 420 REMARK 465 HIS C 421 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 301 CG OD1 OD2 REMARK 470 GLN A 303 CG CD OE1 NE2 REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 ASP A 354 CG OD1 OD2 REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 ASP A 381 CG OD1 OD2 REMARK 470 ASP A 406 CG OD1 OD2 REMARK 470 ASP B 301 CG OD1 OD2 REMARK 470 GLN B 303 CG CD OE1 NE2 REMARK 470 GLU B 304 CG CD OE1 OE2 REMARK 470 GLU B 307 CG CD OE1 OE2 REMARK 470 GLN B 323 CG CD OE1 NE2 REMARK 470 GLU B 326 CG CD OE1 OE2 REMARK 470 ASP B 354 CG OD1 OD2 REMARK 470 ARG B 366 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 380 CG CD CE NZ REMARK 470 ASP B 381 CG OD1 OD2 REMARK 470 GLU B 385 CG CD OE1 OE2 REMARK 470 ARG B 404 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 270 CG OD1 OD2 REMARK 470 ARG C 276 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 300 CG1 CG2 REMARK 470 ASP C 301 CG OD1 OD2 REMARK 470 GLN C 303 CG CD OE1 NE2 REMARK 470 GLU C 307 CG CD OE1 OE2 REMARK 470 ARG C 313 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 323 CG CD OE1 NE2 REMARK 470 GLU C 326 CG CD OE1 OE2 REMARK 470 THR C 330 OG1 CG2 REMARK 470 LYS C 342 CG CD CE NZ REMARK 470 ASP C 354 CG OD1 OD2 REMARK 470 GLU C 356 CG CD OE1 OE2 REMARK 470 ARG C 366 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 380 CG CD CE NZ REMARK 470 ASP C 381 CG OD1 OD2 REMARK 470 LYS C 412 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 299 -5.37 -140.04 REMARK 500 ASP A 381 178.00 173.20 REMARK 500 ALA A 405 36.58 -87.06 REMARK 500 ASP B 270 0.68 84.35 REMARK 500 TYR B 273 31.05 -93.93 REMARK 500 THR B 288 0.53 -67.59 REMARK 500 LEU B 297 -9.30 -58.62 REMARK 500 ASP B 381 -152.69 -126.56 REMARK 500 ALA C 299 84.29 -161.97 REMARK 500 HIS C 340 -169.67 -109.68 REMARK 500 ASN C 367 2.56 -63.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 397 OD1 REMARK 620 2 HOH B 674 O 115.8 REMARK 620 3 HOH B 684 O 68.5 63.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SNR135D RELATED DB: TARGETDB DBREF 3HLY A 262 414 UNP Q5MZP6 Q5MZP6_SYNP6 262 414 DBREF 3HLY B 262 414 UNP Q5MZP6 Q5MZP6_SYNP6 262 414 DBREF 3HLY C 262 414 UNP Q5MZP6 Q5MZP6_SYNP6 262 414 SEQADV 3HLY MSE A 261 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY GLU A 415 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS A 416 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS A 417 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS A 418 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS A 419 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS A 420 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS A 421 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY MSE B 261 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY GLU B 415 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS B 416 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS B 417 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS B 418 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS B 419 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS B 420 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS B 421 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY MSE C 261 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY GLU C 415 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS C 416 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS C 417 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS C 418 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS C 419 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS C 420 UNP Q5MZP6 EXPRESSION TAG SEQADV 3HLY HIS C 421 UNP Q5MZP6 EXPRESSION TAG SEQRES 1 A 161 MSE SER VAL LEU ILE GLY TYR LEU SER ASP TYR GLY TYR SEQRES 2 A 161 SER ASP ARG LEU SER GLN ALA ILE GLY ARG GLY LEU VAL SEQRES 3 A 161 LYS THR GLY VAL ALA VAL GLU MSE VAL ASP LEU ARG ALA SEQRES 4 A 161 VAL ASP PRO GLN GLU LEU ILE GLU ALA VAL SER SER ALA SEQRES 5 A 161 ARG GLY ILE VAL LEU GLY THR PRO PRO SER GLN PRO SER SEQRES 6 A 161 GLU ALA VAL ALA THR ALA LEU SER THR ILE PHE ALA ALA SEQRES 7 A 161 ALA HIS ASN LYS GLN ALA ILE GLY LEU PHE ASP SER TYR SEQRES 8 A 161 GLY GLY ASP ASP GLU PRO ILE ASP ALA LEU LEU ALA GLN SEQRES 9 A 161 PHE ARG ASN LEU GLY LEU HIS THR ALA PHE PRO PRO ILE SEQRES 10 A 161 ARG VAL LYS ASP GLN PRO THR GLU ALA ILE TYR GLN GLN SEQRES 11 A 161 CYS GLU GLU SER GLY THR ASP LEU GLY GLN TRP LEU THR SEQRES 12 A 161 ARG ALA ASP ALA ILE GLN THR MSE LYS SER LEU GLU HIS SEQRES 13 A 161 HIS HIS HIS HIS HIS SEQRES 1 B 161 MSE SER VAL LEU ILE GLY TYR LEU SER ASP TYR GLY TYR SEQRES 2 B 161 SER ASP ARG LEU SER GLN ALA ILE GLY ARG GLY LEU VAL SEQRES 3 B 161 LYS THR GLY VAL ALA VAL GLU MSE VAL ASP LEU ARG ALA SEQRES 4 B 161 VAL ASP PRO GLN GLU LEU ILE GLU ALA VAL SER SER ALA SEQRES 5 B 161 ARG GLY ILE VAL LEU GLY THR PRO PRO SER GLN PRO SER SEQRES 6 B 161 GLU ALA VAL ALA THR ALA LEU SER THR ILE PHE ALA ALA SEQRES 7 B 161 ALA HIS ASN LYS GLN ALA ILE GLY LEU PHE ASP SER TYR SEQRES 8 B 161 GLY GLY ASP ASP GLU PRO ILE ASP ALA LEU LEU ALA GLN SEQRES 9 B 161 PHE ARG ASN LEU GLY LEU HIS THR ALA PHE PRO PRO ILE SEQRES 10 B 161 ARG VAL LYS ASP GLN PRO THR GLU ALA ILE TYR GLN GLN SEQRES 11 B 161 CYS GLU GLU SER GLY THR ASP LEU GLY GLN TRP LEU THR SEQRES 12 B 161 ARG ALA ASP ALA ILE GLN THR MSE LYS SER LEU GLU HIS SEQRES 13 B 161 HIS HIS HIS HIS HIS SEQRES 1 C 161 MSE SER VAL LEU ILE GLY TYR LEU SER ASP TYR GLY TYR SEQRES 2 C 161 SER ASP ARG LEU SER GLN ALA ILE GLY ARG GLY LEU VAL SEQRES 3 C 161 LYS THR GLY VAL ALA VAL GLU MSE VAL ASP LEU ARG ALA SEQRES 4 C 161 VAL ASP PRO GLN GLU LEU ILE GLU ALA VAL SER SER ALA SEQRES 5 C 161 ARG GLY ILE VAL LEU GLY THR PRO PRO SER GLN PRO SER SEQRES 6 C 161 GLU ALA VAL ALA THR ALA LEU SER THR ILE PHE ALA ALA SEQRES 7 C 161 ALA HIS ASN LYS GLN ALA ILE GLY LEU PHE ASP SER TYR SEQRES 8 C 161 GLY GLY ASP ASP GLU PRO ILE ASP ALA LEU LEU ALA GLN SEQRES 9 C 161 PHE ARG ASN LEU GLY LEU HIS THR ALA PHE PRO PRO ILE SEQRES 10 C 161 ARG VAL LYS ASP GLN PRO THR GLU ALA ILE TYR GLN GLN SEQRES 11 C 161 CYS GLU GLU SER GLY THR ASP LEU GLY GLN TRP LEU THR SEQRES 12 C 161 ARG ALA ASP ALA ILE GLN THR MSE LYS SER LEU GLU HIS SEQRES 13 C 161 HIS HIS HIS HIS HIS MODRES 3HLY MSE A 294 MET SELENOMETHIONINE MODRES 3HLY MSE B 294 MET SELENOMETHIONINE MODRES 3HLY MSE C 294 MET SELENOMETHIONINE MODRES 3HLY MSE C 411 MET SELENOMETHIONINE HET MSE A 294 8 HET MSE B 294 8 HET MSE C 294 8 HET MSE C 411 8 HET CA B 501 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 4 CA CA 2+ FORMUL 5 HOH *104(H2 O) HELIX 1 1 TYR A 273 THR A 288 1 16 HELIX 2 2 ASP A 301 ALA A 312 1 12 HELIX 3 3 SER A 325 ALA A 339 1 15 HELIX 4 4 PRO A 357 LEU A 368 1 12 HELIX 5 5 THR A 384 ALA A 405 1 22 HELIX 6 6 TYR B 273 THR B 288 1 16 HELIX 7 7 ASP B 301 ALA B 312 1 12 HELIX 8 8 SER B 325 ALA B 339 1 15 HELIX 9 9 PRO B 357 LEU B 368 1 12 HELIX 10 10 THR B 384 ALA B 405 1 22 HELIX 11 11 TYR C 273 LYS C 287 1 15 HELIX 12 12 ARG C 298 VAL C 300 5 3 HELIX 13 13 ASP C 301 ALA C 312 1 12 HELIX 14 14 GLN C 323 ALA C 327 5 5 HELIX 15 15 ALA C 331 PHE C 336 1 6 HELIX 16 16 PRO C 357 ASN C 367 1 11 HELIX 17 17 THR C 384 LEU C 414 1 31 SHEET 1 A 5 VAL A 292 ASP A 296 0 SHEET 2 A 5 VAL A 263 TYR A 267 1 N VAL A 263 O GLU A 293 SHEET 3 A 5 GLY A 314 GLY A 318 1 O VAL A 316 N LEU A 264 SHEET 4 A 5 ALA A 344 PHE A 348 1 O GLY A 346 N ILE A 315 SHEET 5 A 5 HIS A 371 THR A 372 1 O HIS A 371 N ILE A 345 SHEET 1 B 5 VAL B 292 ASP B 296 0 SHEET 2 B 5 VAL B 263 TYR B 267 1 N ILE B 265 O GLU B 293 SHEET 3 B 5 GLY B 314 GLY B 318 1 O VAL B 316 N LEU B 264 SHEET 4 B 5 ALA B 344 PHE B 348 1 O GLY B 346 N ILE B 315 SHEET 5 B 5 HIS B 371 THR B 372 1 O HIS B 371 N ILE B 345 SHEET 1 C 5 VAL C 292 ASP C 296 0 SHEET 2 C 5 VAL C 263 TYR C 267 1 N ILE C 265 O GLU C 293 SHEET 3 C 5 GLY C 314 GLY C 318 1 O VAL C 316 N GLY C 266 SHEET 4 C 5 ALA C 344 PHE C 348 1 O GLY C 346 N ILE C 315 SHEET 5 C 5 HIS C 371 THR C 372 1 O HIS C 371 N ILE C 345 LINK C GLU A 293 N MSE A 294 1555 1555 1.33 LINK C MSE A 294 N VAL A 295 1555 1555 1.32 LINK C GLU B 293 N MSE B 294 1555 1555 1.33 LINK C MSE B 294 N VAL B 295 1555 1555 1.32 LINK C GLU C 293 N MSE C 294 1555 1555 1.33 LINK C MSE C 294 N VAL C 295 1555 1555 1.33 LINK C THR C 410 N MSE C 411 1555 1555 1.33 LINK C MSE C 411 N LYS C 412 1555 1555 1.33 LINK OD1 ASP B 397 CA CA B 501 1555 1555 2.70 LINK CA CA B 501 O HOH B 674 1555 1555 2.79 LINK CA CA B 501 O HOH B 684 1555 1555 2.67 SITE 1 AC1 4 GLU B 393 ASP B 397 HOH B 674 HOH B 684 CRYST1 76.270 97.899 118.076 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008469 0.00000