HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-MAY-09 3HLZ TITLE CRYSTAL STRUCTURE OF BT_1490 (NP_810393.1) FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON VPI-5482 AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN BT_1490; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_1480, NP_810393.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_810393.1, BT_1490, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3HLZ 1 REMARK SEQADV LINK REVDAT 5 24-JUL-19 3HLZ 1 REMARK LINK REVDAT 4 01-NOV-17 3HLZ 1 REMARK REVDAT 3 13-JUL-11 3HLZ 1 VERSN REVDAT 2 24-NOV-09 3HLZ 1 TITLE REVDAT 1 16-JUN-09 3HLZ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF BT_1490 (NP_810393.1) FROM BACTEROIDES JRNL TITL 2 THETAIOTAOMICRON VPI-5482 AT 1.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 76816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3838 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4224 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4205 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 448 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 15.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : -1.35000 REMARK 3 B33 (A**2) : 0.52000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : -0.60000 REMARK 3 B23 (A**2) : -0.18000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.953 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4508 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3022 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6146 ; 1.486 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7424 ; 0.868 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 590 ; 5.428 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;33.186 ;25.607 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 757 ;11.417 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.284 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 647 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5133 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 901 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 858 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3055 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2202 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2313 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 391 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.110 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.333 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 74 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.015 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2854 ; 1.485 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1125 ; 0.382 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4450 ; 2.076 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1987 ; 1.709 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1668 ; 2.566 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6270 64.5620 0.5780 REMARK 3 T TENSOR REMARK 3 T11: -0.1277 T22: -0.0956 REMARK 3 T33: -0.1185 T12: -0.0176 REMARK 3 T13: 0.0208 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.5630 L22: 1.1765 REMARK 3 L33: 1.8775 L12: -0.4368 REMARK 3 L13: 0.0167 L23: -0.2329 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: -0.0243 S13: 0.0424 REMARK 3 S21: 0.0406 S22: 0.0221 S23: -0.0545 REMARK 3 S31: -0.0753 S32: -0.0465 S33: -0.0433 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 132 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2280 34.3530 5.7200 REMARK 3 T TENSOR REMARK 3 T11: -0.1448 T22: -0.0702 REMARK 3 T33: -0.0712 T12: -0.0134 REMARK 3 T13: 0.0221 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.6443 L22: 3.5480 REMARK 3 L33: 1.2248 L12: -0.7424 REMARK 3 L13: 0.3902 L23: -1.2398 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: 0.0832 S13: -0.0170 REMARK 3 S21: -0.1142 S22: -0.0469 S23: -0.1743 REMARK 3 S31: 0.0382 S32: 0.0970 S33: 0.0639 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 131 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4640 45.2320 -33.7180 REMARK 3 T TENSOR REMARK 3 T11: -0.1156 T22: -0.0984 REMARK 3 T33: -0.1091 T12: -0.0178 REMARK 3 T13: 0.0062 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.7557 L22: 0.7501 REMARK 3 L33: 1.3708 L12: -0.2596 REMARK 3 L13: -0.1020 L23: 0.0680 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: -0.0271 S13: -0.0609 REMARK 3 S21: 0.0301 S22: 0.0226 S23: 0.0139 REMARK 3 S31: 0.0703 S32: 0.0360 S33: -0.0506 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 132 B 268 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5060 75.1510 -29.0300 REMARK 3 T TENSOR REMARK 3 T11: -0.1489 T22: -0.0768 REMARK 3 T33: -0.1070 T12: -0.0132 REMARK 3 T13: 0.0289 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.5862 L22: 2.8718 REMARK 3 L33: 1.1186 L12: -0.4527 REMARK 3 L13: 0.0136 L23: 0.9266 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: 0.0592 S13: 0.0481 REMARK 3 S21: -0.0571 S22: -0.0158 S23: 0.0940 REMARK 3 S31: -0.0489 S32: -0.0757 S33: 0.0035 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.85 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4 GLYCEROL (GOL), ACETATE (ACT), AND CALCIUM (CA) FROM THE REMARK 3 CRYSTALLIZATION/CRYOGEN SOLUTIONS WERE MODELED INTO THE REMARK 3 STRUCTURE. 4. UN-ASSIGNED ELECTRON DENSITES NEAR THE SIDECHAINS REMARK 3 OF GLU 177 AND GLU 213 ON THE A SUBUNIT, AND LYS A73 ON THE A REMARK 3 SUBUNIT WERE NOT MODELED. REMARK 4 REMARK 4 3HLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97845 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76979 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.814 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M CA(OAC)2, 20.0000% PEG-8000, REMARK 280 0.1M MES PH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 LYS A 83 NZ REMARK 470 GLU A 88 CD OE1 OE2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 LYS A 137 CD CE NZ REMARK 470 LYS A 165 CD CE NZ REMARK 470 LYS A 190 CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LYS A 195 CD CE NZ REMARK 470 LYS A 250 CD CE NZ REMARK 470 GLN B 2 CD NE2 REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 LYS B 73 CE NZ REMARK 470 LYS B 120 CE NZ REMARK 470 LYS B 133 CD CE NZ REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 470 GLU B 136 OE1 OE2 REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 LYS B 165 CE NZ REMARK 470 LYS B 169 CD CE NZ REMARK 470 LYS B 190 CE NZ REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 LYS B 250 CE NZ REMARK 470 GLN B 253 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 61 OE2 GLU A 65 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 109 CB CYS A 109 SG -0.107 REMARK 500 GLU A 121 CD GLU A 121 OE1 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 -72.86 -91.00 REMARK 500 ALA A 245 -49.55 -133.39 REMARK 500 ASP B 37 -68.66 -90.23 REMARK 500 ALA B 245 -52.39 -134.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 272 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MSE B 1 O REMARK 620 2 GOL B 269 O2 86.2 REMARK 620 3 GOL B 269 O3 82.3 59.6 REMARK 620 4 HOH B 377 O 91.8 139.5 80.0 REMARK 620 5 HOH B 378 O 174.0 89.3 92.0 89.1 REMARK 620 6 HOH B 458 O 92.0 78.2 137.7 142.2 90.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 272 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396688 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THE CONSTRUCT (RESIDUES 23-178) WAS EXPRESSED WITH A REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3HLZ A 1 268 UNP Q8A7P4 Q8A7P4_BACTN 1 268 DBREF 3HLZ B 1 268 UNP Q8A7P4 Q8A7P4_BACTN 1 268 SEQADV 3HLZ GLY A 0 UNP Q8A7P4 EXPRESSION TAG SEQADV 3HLZ GLY B 0 UNP Q8A7P4 EXPRESSION TAG SEQRES 1 A 269 GLY MSE GLN GLY LYS LYS PHE ILE SER PRO GLY ALA TRP SEQRES 2 A 269 PHE SER MSE ASN TYR PRO SER ASP TRP ASN GLU PHE GLU SEQRES 3 A 269 ASP GLY GLU GLY SER PHE LEU PHE TYR ASN PRO ASP VAL SEQRES 4 A 269 TRP THR GLY ASN PHE ARG ILE SER ALA PHE LYS GLY ASN SEQRES 5 A 269 ALA SER TYR GLY LYS ASP ALA ILE ARG GLN GLU LEU LYS SEQRES 6 A 269 GLU ASN ASP SER ALA SER LEU VAL LYS ILE GLY THR TRP SEQRES 7 A 269 ASP CYS ALA TYR SER LYS GLU MSE PHE GLN GLU GLU GLY SEQRES 8 A 269 THR TYR TYR THR SER HIS LEU TRP ILE THR GLY THR GLY SEQRES 9 A 269 ASN ILE ALA PHE GLU CYS SER PHE THR VAL PRO LYS GLY SEQRES 10 A 269 GLY SER ALA LYS GLU ALA GLU GLU VAL ILE ALA THR LEU SEQRES 11 A 269 GLU ALA ARG LYS GLU GLY GLU LYS TYR PRO ALA GLU LEU SEQRES 12 A 269 ILE PRO VAL ARG LEU SER GLU ILE TYR GLN ILE ASN GLU SEQRES 13 A 269 GLY TYR GLU TRP VAL VAL SER THR VAL LYS GLN GLU LEU SEQRES 14 A 269 LYS LYS ASP PHE GLN GLY VAL GLU GLU ASP LEU GLU LYS SEQRES 15 A 269 ILE GLN GLN VAL ILE ASP SER GLY LYS ILE SER PRO LYS SEQRES 16 A 269 LYS LYS ASP GLU TRP LEU ALA ILE GLY ILE THR VAL CYS SEQRES 17 A 269 ALA ILE LEU THR ASN GLU VAL GLU GLY MSE GLU TRP LYS SEQRES 18 A 269 THR LEU ILE ASP GLY ASN ARG GLU VAL PRO VAL LEU GLU SEQRES 19 A 269 TYR GLN GLY ARG THR ILE ASP PRO MSE LYS ILE ALA TRP SEQRES 20 A 269 SER LYS VAL LYS ALA GLY GLN PRO CYS ASN ILE ALA GLU SEQRES 21 A 269 ALA TYR GLN SER ALA ILE ASP HIS HIS SEQRES 1 B 269 GLY MSE GLN GLY LYS LYS PHE ILE SER PRO GLY ALA TRP SEQRES 2 B 269 PHE SER MSE ASN TYR PRO SER ASP TRP ASN GLU PHE GLU SEQRES 3 B 269 ASP GLY GLU GLY SER PHE LEU PHE TYR ASN PRO ASP VAL SEQRES 4 B 269 TRP THR GLY ASN PHE ARG ILE SER ALA PHE LYS GLY ASN SEQRES 5 B 269 ALA SER TYR GLY LYS ASP ALA ILE ARG GLN GLU LEU LYS SEQRES 6 B 269 GLU ASN ASP SER ALA SER LEU VAL LYS ILE GLY THR TRP SEQRES 7 B 269 ASP CYS ALA TYR SER LYS GLU MSE PHE GLN GLU GLU GLY SEQRES 8 B 269 THR TYR TYR THR SER HIS LEU TRP ILE THR GLY THR GLY SEQRES 9 B 269 ASN ILE ALA PHE GLU CYS SER PHE THR VAL PRO LYS GLY SEQRES 10 B 269 GLY SER ALA LYS GLU ALA GLU GLU VAL ILE ALA THR LEU SEQRES 11 B 269 GLU ALA ARG LYS GLU GLY GLU LYS TYR PRO ALA GLU LEU SEQRES 12 B 269 ILE PRO VAL ARG LEU SER GLU ILE TYR GLN ILE ASN GLU SEQRES 13 B 269 GLY TYR GLU TRP VAL VAL SER THR VAL LYS GLN GLU LEU SEQRES 14 B 269 LYS LYS ASP PHE GLN GLY VAL GLU GLU ASP LEU GLU LYS SEQRES 15 B 269 ILE GLN GLN VAL ILE ASP SER GLY LYS ILE SER PRO LYS SEQRES 16 B 269 LYS LYS ASP GLU TRP LEU ALA ILE GLY ILE THR VAL CYS SEQRES 17 B 269 ALA ILE LEU THR ASN GLU VAL GLU GLY MSE GLU TRP LYS SEQRES 18 B 269 THR LEU ILE ASP GLY ASN ARG GLU VAL PRO VAL LEU GLU SEQRES 19 B 269 TYR GLN GLY ARG THR ILE ASP PRO MSE LYS ILE ALA TRP SEQRES 20 B 269 SER LYS VAL LYS ALA GLY GLN PRO CYS ASN ILE ALA GLU SEQRES 21 B 269 ALA TYR GLN SER ALA ILE ASP HIS HIS MODRES 3HLZ MSE A 1 MET SELENOMETHIONINE MODRES 3HLZ MSE A 15 MET SELENOMETHIONINE MODRES 3HLZ MSE A 85 MET SELENOMETHIONINE MODRES 3HLZ MSE A 217 MET SELENOMETHIONINE MODRES 3HLZ MSE A 242 MET SELENOMETHIONINE MODRES 3HLZ MSE B 1 MET SELENOMETHIONINE MODRES 3HLZ MSE B 15 MET SELENOMETHIONINE MODRES 3HLZ MSE B 85 MET SELENOMETHIONINE MODRES 3HLZ MSE B 217 MET SELENOMETHIONINE MODRES 3HLZ MSE B 242 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 15 8 HET MSE A 85 8 HET MSE A 217 8 HET MSE A 242 13 HET MSE B 1 8 HET MSE B 15 8 HET MSE B 85 8 HET MSE B 217 8 HET MSE B 242 13 HET GOL A 269 6 HET GOL A 270 6 HET GOL A 271 6 HET ACT A 272 4 HET ACT A 273 4 HET GOL B 269 6 HET ACT B 270 4 HET ACT B 271 4 HET CA B 272 1 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 GOL 4(C3 H8 O3) FORMUL 6 ACT 4(C2 H3 O2 1-) FORMUL 11 CA CA 2+ FORMUL 12 HOH *448(H2 O) HELIX 1 1 PRO A 9 ALA A 11 5 3 HELIX 2 2 SER A 53 ASN A 66 1 14 HELIX 3 3 ALA A 119 LEU A 129 1 11 HELIX 4 4 ARG A 146 LYS A 169 1 24 HELIX 5 5 VAL A 175 GLU A 177 5 3 HELIX 6 6 ASP A 178 SER A 188 1 11 HELIX 7 7 LYS A 195 VAL A 214 1 20 HELIX 8 8 ASP A 240 ALA A 245 1 6 HELIX 9 9 ALA A 245 ALA A 251 1 7 HELIX 10 10 ASN A 256 HIS A 267 1 12 HELIX 11 11 PRO B 9 ALA B 11 5 3 HELIX 12 12 SER B 53 ASN B 66 1 14 HELIX 13 13 ALA B 119 LEU B 129 1 11 HELIX 14 14 ARG B 146 LYS B 169 1 24 HELIX 15 15 VAL B 175 GLU B 177 5 3 HELIX 16 16 ASP B 178 SER B 188 1 11 HELIX 17 17 LYS B 195 VAL B 214 1 20 HELIX 18 18 ASP B 240 ALA B 245 1 6 HELIX 19 19 ALA B 245 ALA B 251 1 7 HELIX 20 20 ASN B 256 HIS B 267 1 12 SHEET 1 A 3 LYS A 4 ILE A 7 0 SHEET 2 A 3 PHE A 13 TYR A 17 -1 O MSE A 15 N PHE A 6 SHEET 3 A 3 GLU A 130 ALA A 131 -1 O GLU A 130 N SER A 14 SHEET 1 B 7 ASN A 22 PHE A 24 0 SHEET 2 B 7 SER A 30 TYR A 34 -1 O LEU A 32 N PHE A 24 SHEET 3 B 7 ASN A 42 LYS A 49 -1 O PHE A 43 N PHE A 33 SHEET 4 B 7 ILE A 105 PRO A 114 -1 O ALA A 106 N PHE A 48 SHEET 5 B 7 THR A 91 THR A 102 -1 N THR A 100 O PHE A 107 SHEET 6 B 7 TRP A 77 GLU A 88 -1 N GLU A 84 O SER A 95 SHEET 7 B 7 SER A 70 ILE A 74 -1 N VAL A 72 O CYS A 79 SHEET 1 C 4 GLU A 141 PRO A 144 0 SHEET 2 C 4 GLU A 218 ASP A 224 -1 O ILE A 223 N GLU A 141 SHEET 3 C 4 ARG A 227 TYR A 234 -1 O ARG A 227 N ASP A 224 SHEET 4 C 4 ARG A 237 ILE A 239 -1 O ILE A 239 N LEU A 232 SHEET 1 D 3 LYS B 4 ILE B 7 0 SHEET 2 D 3 PHE B 13 TYR B 17 -1 O MSE B 15 N PHE B 6 SHEET 3 D 3 GLU B 130 ALA B 131 -1 O GLU B 130 N SER B 14 SHEET 1 E 7 ASN B 22 PHE B 24 0 SHEET 2 E 7 SER B 30 TYR B 34 -1 O TYR B 34 N ASN B 22 SHEET 3 E 7 ASN B 42 LYS B 49 -1 O PHE B 43 N PHE B 33 SHEET 4 E 7 ILE B 105 PRO B 114 -1 O ALA B 106 N PHE B 48 SHEET 5 E 7 THR B 91 THR B 102 -1 N TRP B 98 O CYS B 109 SHEET 6 E 7 TRP B 77 GLU B 88 -1 N GLU B 84 O SER B 95 SHEET 7 E 7 SER B 70 ILE B 74 -1 N VAL B 72 O CYS B 79 SHEET 1 F 4 GLU B 141 PRO B 144 0 SHEET 2 F 4 GLU B 218 ASP B 224 -1 O THR B 221 N ILE B 143 SHEET 3 F 4 ARG B 227 TYR B 234 -1 O ARG B 227 N ASP B 224 SHEET 4 F 4 ARG B 237 ILE B 239 -1 O ARG B 237 N TYR B 234 LINK C MSE A 1 N GLN A 2 1555 1555 1.33 LINK C SER A 14 N MSE A 15 1555 1555 1.32 LINK C MSE A 15 N ASN A 16 1555 1555 1.33 LINK C GLU A 84 N MSE A 85 1555 1555 1.32 LINK C MSE A 85 N PHE A 86 1555 1555 1.32 LINK C GLY A 216 N MSE A 217 1555 1555 1.34 LINK C MSE A 217 N GLU A 218 1555 1555 1.33 LINK C PRO A 241 N MSE A 242 1555 1555 1.33 LINK C MSE A 242 N LYS A 243 1555 1555 1.32 LINK C GLY B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N GLN B 2 1555 1555 1.33 LINK C SER B 14 N MSE B 15 1555 1555 1.33 LINK C MSE B 15 N ASN B 16 1555 1555 1.32 LINK C GLU B 84 N MSE B 85 1555 1555 1.34 LINK C MSE B 85 N PHE B 86 1555 1555 1.33 LINK C GLY B 216 N MSE B 217 1555 1555 1.33 LINK C MSE B 217 N GLU B 218 1555 1555 1.33 LINK C PRO B 241 N MSE B 242 1555 1555 1.34 LINK C MSE B 242 N LYS B 243 1555 1555 1.33 LINK O MSE B 1 CA CA B 272 1555 1555 2.26 LINK O2 GOL B 269 CA CA B 272 1555 1555 2.42 LINK O3 GOL B 269 CA CA B 272 1555 1555 2.63 LINK CA CA B 272 O HOH B 377 1555 1555 2.36 LINK CA CA B 272 O HOH B 378 1555 1555 2.31 LINK CA CA B 272 O HOH B 458 1555 1555 2.29 SITE 1 AC1 7 ASN A 22 GLU A 23 ILE A 150 HOH A 280 SITE 2 AC1 7 HOH A 414 ASN B 51 ALA B 52 SITE 1 AC2 7 ASN A 51 ALA A 52 ASN B 22 GLU B 23 SITE 2 AC2 7 ILE B 150 HOH B 275 HOH B 308 SITE 1 AC3 5 ILE A 150 ASN A 154 TRP A 219 SER B 53 SITE 2 AC3 5 ASP B 57 SITE 1 AC4 4 ARG A 227 VAL A 229 MSE A 242 HOH A 490 SITE 1 AC5 3 ILE A 239 ASP A 240 LYS A 243 SITE 1 AC6 8 MSE B 1 GLN B 2 ASN B 16 TYR B 17 SITE 2 AC6 8 VAL B 125 CA B 272 HOH B 309 HOH B 458 SITE 1 AC7 4 LEU B 200 ARG B 227 VAL B 229 HOH B 433 SITE 1 AC8 4 THR B 238 ILE B 239 ASP B 240 LYS B 243 SITE 1 AC9 6 MSE B 1 GOL B 269 HOH B 377 HOH B 378 SITE 2 AC9 6 HOH B 404 HOH B 458 CRYST1 31.210 62.087 68.555 90.39 91.50 97.34 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032041 0.004127 0.000880 0.00000 SCALE2 0.000000 0.016239 0.000166 0.00000 SCALE3 0.000000 0.000000 0.014593 0.00000 HETATM 1 N MSE A 1 35.870 64.094 8.163 1.00 47.37 N HETATM 2 CA MSE A 1 35.619 65.260 7.253 1.00 46.60 C HETATM 3 C MSE A 1 34.930 64.847 5.925 1.00 44.02 C HETATM 4 O MSE A 1 34.029 65.532 5.454 1.00 44.28 O HETATM 5 CB MSE A 1 36.938 66.004 6.991 1.00 48.33 C HETATM 6 CG MSE A 1 36.927 66.997 5.832 1.00 49.38 C HETATM 7 SE MSE A 1 36.123 68.734 6.272 0.75 51.72 SE HETATM 8 CE MSE A 1 34.312 68.232 6.811 1.00 50.24 C