HEADER HYDROLASE 28-MAY-09 3HM4 TITLE CRYSTAL STRUCTURE OF A CHEMOTAXIS PROTEIN CHEX (DDE_0281) FROM TITLE 2 DESULFOVIBRIO DESULFURICANS SUBSP. AT 1.30 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHEMOTAXIS PROTEIN CHEX; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO DESULFURICANS SUBSP. SOURCE 3 DESULFURICANS STR. G20; SOURCE 4 ORGANISM_TAXID: 207559; SOURCE 5 GENE: DDE_0281, YP_386777.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS CHEMOTAXIS PROTEIN CHEX, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3HM4 1 REMARK SEQADV REVDAT 5 24-JUL-19 3HM4 1 REMARK LINK REVDAT 4 01-NOV-17 3HM4 1 REMARK REVDAT 3 13-JUL-11 3HM4 1 VERSN REVDAT 2 28-JUL-10 3HM4 1 HEADER TITLE KEYWDS REVDAT 1 23-JUN-09 3HM4 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF CHEMOTAXIS PROTEIN CHEX (YP_386777.1) JRNL TITL 2 FROM DESULFOVIBRIO DESULFURICANS G20 AT 1.30 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 63998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3240 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4269 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 234 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : -0.94000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.515 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2367 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1512 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3249 ; 1.745 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3807 ; 1.410 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 5.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;29.185 ;26.905 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 411 ;10.966 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;12.154 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2681 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 401 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1566 ; 2.206 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 641 ; 1.288 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2574 ; 3.193 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 801 ; 4.387 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 653 ; 6.267 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3879 ; 1.826 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 321 ; 8.725 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3824 ; 4.735 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. GLYCEROL MOLECULE FROM THE CRYSTALLIZATION REMARK 3 SOLUTION IS MODELED. 4. AN UNKNOWN LIGAND (UNL) IS MODELED AT REMARK 3 THE NCS TWO-FOLD AXIS. REMARK 4 REMARK 4 3HM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97932 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64054 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 27.864 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.0000% GLYCEROL, 0.1700M NAOAC, REMARK 280 25.5000% PEG-4000, 0.1M TRIS PH 8.5, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.18100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.66900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.99950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.66900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.18100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.99950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER REMARK 300 AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 GLY B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CD CE NZ REMARK 470 ASP A 78 CG OD1 OD2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 LYS B 37 CD CE NZ REMARK 470 ASP B 78 CG OD1 OD2 REMARK 470 LYS B 133 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE B 109 CG - SE - CE ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 79 64.08 -102.87 REMARK 500 ASP B 79 67.12 -104.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 157 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394179 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3HM4 A 1 155 UNP Q316R4 Q316R4_DESDG 1 155 DBREF 3HM4 B 1 155 UNP Q316R4 Q316R4_DESDG 1 155 SEQADV 3HM4 GLY A 0 UNP Q316R4 EXPRESSION TAG SEQADV 3HM4 GLY B 0 UNP Q316R4 EXPRESSION TAG SEQRES 1 A 156 GLY MSE SER SER SER GLY ILE GLU ILE ALA LYS PRO PHE SEQRES 2 A 156 VAL THR ALA THR THR ASN VAL LEU SER THR MSE ALA GLY SEQRES 3 A 156 ILE GLN PRO ILE PRO GLY GLN PRO TYR VAL LYS LYS ASN SEQRES 4 A 156 ASN VAL ALA LYS GLY ASP VAL SER ALA VAL VAL GLY ILE SEQRES 5 A 156 THR GLY HIS LYS ASN GLY SER ILE SER VAL THR PHE THR SEQRES 6 A 156 LYS GLN CYS ALA ILE ALA VAL VAL LYS ALA MSE LEU GLY SEQRES 7 A 156 ASP ASP ILE GLN ASP ILE ILE GLN ASP THR LYS ASP ALA SEQRES 8 A 156 VAL GLY GLU VAL THR ASN MSE ILE SER GLY GLN ALA ARG SEQRES 9 A 156 ALA ALA LEU SER GLU MSE GLY MSE THR PHE GLN GLY ALA SEQRES 10 A 156 THR PRO SER VAL ILE MSE GLY ASP GLY HIS THR ILE SER SEQRES 11 A 156 HIS VAL THR LYS SER PRO VAL ILE ALA ILE PRO PHE LYS SEQRES 12 A 156 THR ASN HIS GLY GLU PHE THR VAL GLU PHE CYS LEU GLU SEQRES 1 B 156 GLY MSE SER SER SER GLY ILE GLU ILE ALA LYS PRO PHE SEQRES 2 B 156 VAL THR ALA THR THR ASN VAL LEU SER THR MSE ALA GLY SEQRES 3 B 156 ILE GLN PRO ILE PRO GLY GLN PRO TYR VAL LYS LYS ASN SEQRES 4 B 156 ASN VAL ALA LYS GLY ASP VAL SER ALA VAL VAL GLY ILE SEQRES 5 B 156 THR GLY HIS LYS ASN GLY SER ILE SER VAL THR PHE THR SEQRES 6 B 156 LYS GLN CYS ALA ILE ALA VAL VAL LYS ALA MSE LEU GLY SEQRES 7 B 156 ASP ASP ILE GLN ASP ILE ILE GLN ASP THR LYS ASP ALA SEQRES 8 B 156 VAL GLY GLU VAL THR ASN MSE ILE SER GLY GLN ALA ARG SEQRES 9 B 156 ALA ALA LEU SER GLU MSE GLY MSE THR PHE GLN GLY ALA SEQRES 10 B 156 THR PRO SER VAL ILE MSE GLY ASP GLY HIS THR ILE SER SEQRES 11 B 156 HIS VAL THR LYS SER PRO VAL ILE ALA ILE PRO PHE LYS SEQRES 12 B 156 THR ASN HIS GLY GLU PHE THR VAL GLU PHE CYS LEU GLU MODRES 3HM4 MSE A 23 MET SELENOMETHIONINE MODRES 3HM4 MSE A 75 MET SELENOMETHIONINE MODRES 3HM4 MSE A 97 MET SELENOMETHIONINE MODRES 3HM4 MSE A 109 MET SELENOMETHIONINE MODRES 3HM4 MSE A 111 MET SELENOMETHIONINE MODRES 3HM4 MSE A 122 MET SELENOMETHIONINE MODRES 3HM4 MSE B 23 MET SELENOMETHIONINE MODRES 3HM4 MSE B 75 MET SELENOMETHIONINE MODRES 3HM4 MSE B 97 MET SELENOMETHIONINE MODRES 3HM4 MSE B 109 MET SELENOMETHIONINE MODRES 3HM4 MSE B 111 MET SELENOMETHIONINE MODRES 3HM4 MSE B 122 MET SELENOMETHIONINE HET MSE A 23 8 HET MSE A 75 13 HET MSE A 97 8 HET MSE A 109 8 HET MSE A 111 8 HET MSE A 122 8 HET MSE B 23 8 HET MSE B 75 13 HET MSE B 97 8 HET MSE B 109 13 HET MSE B 111 8 HET MSE B 122 8 HET UNL A 156 9 HET GOL A 157 6 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *312(H2 O) HELIX 1 1 GLY A 5 GLU A 7 5 3 HELIX 2 2 ILE A 8 GLY A 25 1 18 HELIX 3 3 THR A 64 GLY A 77 1 14 HELIX 4 4 ASP A 82 MSE A 109 1 28 HELIX 5 5 ILE B 6 ILE B 8 5 3 HELIX 6 6 ALA B 9 GLY B 25 1 17 HELIX 7 7 THR B 64 LEU B 76 1 13 HELIX 8 8 ASP B 82 MSE B 109 1 28 LINK C THR A 22 N MSE A 23 1555 1555 1.34 LINK C MSE A 23 N ALA A 24 1555 1555 1.34 LINK C ALA A 74 N MSE A 75 1555 1555 1.33 LINK C MSE A 75 N LEU A 76 1555 1555 1.33 LINK C ASN A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N ILE A 98 1555 1555 1.34 LINK C GLU A 108 N MSE A 109 1555 1555 1.34 LINK C MSE A 109 N GLY A 110 1555 1555 1.33 LINK C GLY A 110 N MSE A 111 1555 1555 1.34 LINK C MSE A 111 N THR A 112 1555 1555 1.32 LINK C ILE A 121 N MSE A 122 1555 1555 1.34 LINK C MSE A 122 N GLY A 123 1555 1555 1.32 LINK C THR B 22 N MSE B 23 1555 1555 1.33 LINK C MSE B 23 N ALA B 24 1555 1555 1.32 LINK C ALA B 74 N MSE B 75 1555 1555 1.33 LINK C MSE B 75 N LEU B 76 1555 1555 1.33 LINK C ASN B 96 N MSE B 97 1555 1555 1.32 LINK C MSE B 97 N ILE B 98 1555 1555 1.33 LINK C GLU B 108 N MSE B 109 1555 1555 1.35 LINK C MSE B 109 N GLY B 110 1555 1555 1.35 LINK C GLY B 110 N MSE B 111 1555 1555 1.33 LINK C MSE B 111 N THR B 112 1555 1555 1.32 LINK C ILE B 121 N MSE B 122 1555 1555 1.33 LINK C MSE B 122 N GLY B 123 1555 1555 1.31 SITE 1 AC1 16 VAL A 48 VAL A 49 GLY A 50 SER A 58 SITE 2 AC1 16 ALA A 116 THR A 117 PRO A 118 SER A 119 SITE 3 AC1 16 VAL B 48 VAL B 49 GLY B 50 SER B 58 SITE 4 AC1 16 ALA B 116 THR B 117 PRO B 118 SER B 119 SITE 1 AC2 8 LYS A 36 ALA A 41 LYS A 42 THR A 149 SITE 2 AC2 8 GLU A 151 HOH A 162 HOH A 288 HOH B 174 CRYST1 42.362 73.999 83.338 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023606 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013514 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011999 0.00000