data_3HM5 # _entry.id 3HM5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HM5 pdb_00003hm5 10.2210/pdb3hm5/pdb RCSB RCSB053303 ? ? WWPDB D_1000053303 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 19 4 'Structure model' '_struct_ref_seq_dif.details' 20 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 21 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 22 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3HM5 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-05-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dombrovski, L.' 1 'Tempel, W.' 2 'Amaya, M.F.' 3 'Tong, Y.' 4 'Ni, S.' 5 'Bountra, C.' 6 'Weigelt, J.' 7 'Arrowsmith, C.H.' 8 'Edwards, A.M.' 9 'Bochkarev, A.' 10 'Min, J.' 11 'Park, H.' 12 'Wu, H.' 13 'Structural Genomics Consortium (SGC)' 14 # _citation.id primary _citation.title 'SANT domain of human DNA methyltransferase 1 associated protein 1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dombrovski, L.' 1 ? primary 'Tempel, W.' 2 ? primary 'Amaya, M.F.' 3 ? primary 'Tong, Y.' 4 ? primary 'Ni, S.' 5 ? primary 'Bountra, C.' 6 ? primary 'Weigelt, J.' 7 ? primary 'Arrowsmith, C.H.' 8 ? primary 'Edwards, A.M.' 9 ? primary 'Bochkarev, A.' 10 ? primary 'Min, J.' 11 ? primary 'Park, H.' 12 ? primary 'Wu, H.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA methyltransferase 1-associated protein 1' 11216.549 1 ? ? 'SANT domain, UNP residues 121-212' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN ATOM OR ION' ? 5 ? ? ? ? 4 water nat water 18.015 37 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DNMT1-associated protein 1, DNMAP1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC AKLANVRAVPGTD ; _entity_poly.pdbx_seq_one_letter_code_can ;GGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC AKLANVRAVPGTD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'UNKNOWN ATOM OR ION' UNX 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 LYS n 1 4 ASP n 1 5 TYR n 1 6 PRO n 1 7 PHE n 1 8 ALA n 1 9 ARG n 1 10 PHE n 1 11 ASN n 1 12 LYS n 1 13 THR n 1 14 VAL n 1 15 GLN n 1 16 VAL n 1 17 PRO n 1 18 VAL n 1 19 TYR n 1 20 SER n 1 21 GLU n 1 22 GLN n 1 23 GLU n 1 24 TYR n 1 25 GLN n 1 26 LEU n 1 27 TYR n 1 28 LEU n 1 29 HIS n 1 30 ASP n 1 31 ASP n 1 32 ALA n 1 33 TRP n 1 34 THR n 1 35 LYS n 1 36 ALA n 1 37 GLU n 1 38 THR n 1 39 ASP n 1 40 HIS n 1 41 LEU n 1 42 PHE n 1 43 ASP n 1 44 LEU n 1 45 SER n 1 46 ARG n 1 47 ARG n 1 48 PHE n 1 49 ASP n 1 50 LEU n 1 51 ARG n 1 52 PHE n 1 53 VAL n 1 54 VAL n 1 55 ILE n 1 56 HIS n 1 57 ASP n 1 58 ARG n 1 59 TYR n 1 60 ASP n 1 61 HIS n 1 62 GLN n 1 63 GLN n 1 64 PHE n 1 65 LYS n 1 66 LYS n 1 67 ARG n 1 68 SER n 1 69 VAL n 1 70 GLU n 1 71 ASP n 1 72 LEU n 1 73 LYS n 1 74 GLU n 1 75 ARG n 1 76 TYR n 1 77 TYR n 1 78 HIS n 1 79 ILE n 1 80 CYS n 1 81 ALA n 1 82 LYS n 1 83 LEU n 1 84 ALA n 1 85 ASN n 1 86 VAL n 1 87 ARG n 1 88 ALA n 1 89 VAL n 1 90 PRO n 1 91 GLY n 1 92 THR n 1 93 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DMAP1, KIAA1425' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-V2R' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 120 ? ? ? A . n A 1 2 GLY 2 121 ? ? ? A . n A 1 3 LYS 3 122 ? ? ? A . n A 1 4 ASP 4 123 ? ? ? A . n A 1 5 TYR 5 124 ? ? ? A . n A 1 6 PRO 6 125 ? ? ? A . n A 1 7 PHE 7 126 ? ? ? A . n A 1 8 ALA 8 127 ? ? ? A . n A 1 9 ARG 9 128 ? ? ? A . n A 1 10 PHE 10 129 ? ? ? A . n A 1 11 ASN 11 130 ? ? ? A . n A 1 12 LYS 12 131 ? ? ? A . n A 1 13 THR 13 132 ? ? ? A . n A 1 14 VAL 14 133 ? ? ? A . n A 1 15 GLN 15 134 134 GLN GLN A . n A 1 16 VAL 16 135 135 VAL VAL A . n A 1 17 PRO 17 136 136 PRO PRO A . n A 1 18 VAL 18 137 137 VAL VAL A . n A 1 19 TYR 19 138 138 TYR TYR A . n A 1 20 SER 20 139 139 SER SER A . n A 1 21 GLU 21 140 140 GLU GLU A . n A 1 22 GLN 22 141 141 GLN GLN A . n A 1 23 GLU 23 142 142 GLU GLU A . n A 1 24 TYR 24 143 143 TYR TYR A . n A 1 25 GLN 25 144 144 GLN GLN A . n A 1 26 LEU 26 145 145 LEU LEU A . n A 1 27 TYR 27 146 146 TYR TYR A . n A 1 28 LEU 28 147 147 LEU LEU A . n A 1 29 HIS 29 148 148 HIS HIS A . n A 1 30 ASP 30 149 149 ASP ASP A . n A 1 31 ASP 31 150 150 ASP ASP A . n A 1 32 ALA 32 151 151 ALA ALA A . n A 1 33 TRP 33 152 152 TRP TRP A . n A 1 34 THR 34 153 153 THR THR A . n A 1 35 LYS 35 154 154 LYS LYS A . n A 1 36 ALA 36 155 155 ALA ALA A . n A 1 37 GLU 37 156 156 GLU GLU A . n A 1 38 THR 38 157 157 THR THR A . n A 1 39 ASP 39 158 158 ASP ASP A . n A 1 40 HIS 40 159 159 HIS HIS A . n A 1 41 LEU 41 160 160 LEU LEU A . n A 1 42 PHE 42 161 161 PHE PHE A . n A 1 43 ASP 43 162 162 ASP ASP A . n A 1 44 LEU 44 163 163 LEU LEU A . n A 1 45 SER 45 164 164 SER SER A . n A 1 46 ARG 46 165 165 ARG ARG A . n A 1 47 ARG 47 166 166 ARG ARG A . n A 1 48 PHE 48 167 167 PHE PHE A . n A 1 49 ASP 49 168 168 ASP ASP A . n A 1 50 LEU 50 169 169 LEU LEU A . n A 1 51 ARG 51 170 170 ARG ARG A . n A 1 52 PHE 52 171 171 PHE PHE A . n A 1 53 VAL 53 172 172 VAL VAL A . n A 1 54 VAL 54 173 173 VAL VAL A . n A 1 55 ILE 55 174 174 ILE ILE A . n A 1 56 HIS 56 175 175 HIS HIS A . n A 1 57 ASP 57 176 176 ASP ASP A . n A 1 58 ARG 58 177 177 ARG ARG A . n A 1 59 TYR 59 178 178 TYR TYR A . n A 1 60 ASP 60 179 179 ASP ASP A . n A 1 61 HIS 61 180 180 HIS HIS A . n A 1 62 GLN 62 181 181 GLN GLN A . n A 1 63 GLN 63 182 182 GLN GLN A . n A 1 64 PHE 64 183 183 PHE PHE A . n A 1 65 LYS 65 184 184 LYS LYS A . n A 1 66 LYS 66 185 185 LYS LYS A . n A 1 67 ARG 67 186 186 ARG ARG A . n A 1 68 SER 68 187 187 SER SER A . n A 1 69 VAL 69 188 188 VAL VAL A . n A 1 70 GLU 70 189 189 GLU GLU A . n A 1 71 ASP 71 190 190 ASP ASP A . n A 1 72 LEU 72 191 191 LEU LEU A . n A 1 73 LYS 73 192 192 LYS LYS A . n A 1 74 GLU 74 193 193 GLU GLU A . n A 1 75 ARG 75 194 194 ARG ARG A . n A 1 76 TYR 76 195 195 TYR TYR A . n A 1 77 TYR 77 196 196 TYR TYR A . n A 1 78 HIS 78 197 197 HIS HIS A . n A 1 79 ILE 79 198 198 ILE ILE A . n A 1 80 CYS 80 199 199 CYS CYS A . n A 1 81 ALA 81 200 200 ALA ALA A . n A 1 82 LYS 82 201 201 LYS LYS A . n A 1 83 LEU 83 202 202 LEU LEU A . n A 1 84 ALA 84 203 203 ALA ALA A . n A 1 85 ASN 85 204 204 ASN ASN A . n A 1 86 VAL 86 205 205 VAL VAL A . n A 1 87 ARG 87 206 206 ARG ARG A . n A 1 88 ALA 88 207 207 ALA ALA A . n A 1 89 VAL 89 208 ? ? ? A . n A 1 90 PRO 90 209 ? ? ? A . n A 1 91 GLY 91 210 ? ? ? A . n A 1 92 THR 92 211 ? ? ? A . n A 1 93 ASP 93 212 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 1 1 CA CA A . C 3 UNX 1 213 1 UNX UNX A . D 3 UNX 1 2 2 UNX UNX A . E 3 UNX 1 3 3 UNX UNX A . F 3 UNX 1 4 4 UNX UNX A . G 3 UNX 1 5 5 UNX UNX A . H 4 HOH 1 6 6 HOH HOH A . H 4 HOH 2 7 7 HOH HOH A . H 4 HOH 3 8 8 HOH HOH A . H 4 HOH 4 9 9 HOH HOH A . H 4 HOH 5 10 10 HOH HOH A . H 4 HOH 6 11 11 HOH HOH A . H 4 HOH 7 12 12 HOH HOH A . H 4 HOH 8 13 13 HOH HOH A . H 4 HOH 9 14 14 HOH HOH A . H 4 HOH 10 15 15 HOH HOH A . H 4 HOH 11 16 16 HOH HOH A . H 4 HOH 12 17 17 HOH HOH A . H 4 HOH 13 18 18 HOH HOH A . H 4 HOH 14 19 19 HOH HOH A . H 4 HOH 15 20 20 HOH HOH A . H 4 HOH 16 21 21 HOH HOH A . H 4 HOH 17 22 22 HOH HOH A . H 4 HOH 18 23 23 HOH HOH A . H 4 HOH 19 24 24 HOH HOH A . H 4 HOH 20 25 25 HOH HOH A . H 4 HOH 21 26 26 HOH HOH A . H 4 HOH 22 27 27 HOH HOH A . H 4 HOH 23 28 28 HOH HOH A . H 4 HOH 24 29 29 HOH HOH A . H 4 HOH 25 30 30 HOH HOH A . H 4 HOH 26 31 31 HOH HOH A . H 4 HOH 27 32 32 HOH HOH A . H 4 HOH 28 33 33 HOH HOH A . H 4 HOH 29 34 34 HOH HOH A . H 4 HOH 30 35 35 HOH HOH A . H 4 HOH 31 36 36 HOH HOH A . H 4 HOH 32 37 37 HOH HOH A . H 4 HOH 33 214 1 HOH HOH A . H 4 HOH 34 215 2 HOH HOH A . H 4 HOH 35 216 3 HOH HOH A . H 4 HOH 36 217 4 HOH HOH A . H 4 HOH 37 218 5 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 140 ? CG ? A GLU 21 CG 2 1 Y 1 A GLU 140 ? CD ? A GLU 21 CD 3 1 Y 1 A GLU 140 ? OE1 ? A GLU 21 OE1 4 1 Y 1 A GLU 140 ? OE2 ? A GLU 21 OE2 5 1 Y 1 A GLN 144 ? CG ? A GLN 25 CG 6 1 Y 1 A GLN 144 ? CD ? A GLN 25 CD 7 1 Y 1 A GLN 144 ? OE1 ? A GLN 25 OE1 8 1 Y 1 A GLN 144 ? NE2 ? A GLN 25 NE2 9 1 Y 1 A GLN 181 ? CG ? A GLN 62 CG 10 1 Y 1 A GLN 181 ? CD ? A GLN 62 CD 11 1 Y 1 A GLN 181 ? OE1 ? A GLN 62 OE1 12 1 Y 1 A GLN 181 ? NE2 ? A GLN 62 NE2 13 1 Y 1 A LYS 184 ? CG ? A LYS 65 CG 14 1 Y 1 A LYS 184 ? CD ? A LYS 65 CD 15 1 Y 1 A LYS 184 ? CE ? A LYS 65 CE 16 1 Y 1 A LYS 184 ? NZ ? A LYS 65 NZ 17 1 Y 1 A LYS 185 ? CG ? A LYS 66 CG 18 1 Y 1 A LYS 185 ? CD ? A LYS 66 CD 19 1 Y 1 A LYS 185 ? CE ? A LYS 66 CE 20 1 Y 1 A LYS 185 ? NZ ? A LYS 66 NZ 21 1 Y 1 A LYS 192 ? NZ ? A LYS 73 NZ 22 1 Y 1 A LYS 201 ? CE ? A LYS 82 CE 23 1 Y 1 A LYS 201 ? NZ ? A LYS 82 NZ # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 RESOLVE . ? program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 4 REFMAC 5.5.0072 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 # _cell.entry_id 3HM5 _cell.length_a 36.523 _cell.length_b 36.523 _cell.length_c 230.506 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HM5 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.Int_Tables_number 178 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3HM5 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 37.83 _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '20% PEG3350, 0.2M calcium chloride, 0.1M HEPES, pH 7.0, vapor diffusion, hanging drop, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 3 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 'IMAGE PLATE' 'MAR scanner 300 mm plate' 2009-04-06 ? 2 'IMAGE PLATE' 'MAR scanner 300 mm plate' 2009-05-17 ? 3 'IMAGE PLATE' 'MAR scanner 300 mm plate' 2009-05-16 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' ? 1 M x-ray 2 'SINGLE WAVELENGTH' ? 1 M x-ray 3 'SINGLE WAVELENGTH' ? 1 M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91987 1.0 2 1.07221 1.0 3 1.00645 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'APS BEAMLINE 23-ID-B' 0.91987 ? APS 23-ID-B 2 SYNCHROTRON 'CLSI BEAMLINE 08ID-1' 1.07221 ? CLSI 08ID-1 3 SYNCHROTRON 'CLSI BEAMLINE 08ID-1' 1.00645 ? CLSI 08ID-1 # _reflns.entry_id 3HM5 _reflns.d_resolution_high 1.800 _reflns.d_resolution_low 40.000 _reflns.number_obs 9198 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_netI_over_sigmaI 44.467 _reflns.pdbx_chi_squared 1.434 _reflns.pdbx_redundancy 17.000 _reflns.percent_possible_obs 96.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2,3 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.80 1.86 ? ? ? 0.470 ? ? 0.772 6.20 ? 693 75.60 ? 1 1.86 1.94 ? ? ? 0.364 ? ? 0.795 10.60 ? 833 92.80 ? 2 1.94 2.03 ? ? ? 0.318 ? ? 0.849 15.50 ? 912 99.20 ? 3 2.03 2.13 ? ? ? 0.233 ? ? 0.969 19.20 ? 897 99.90 ? 4 2.13 2.27 ? ? ? 0.168 ? ? 1.139 20.00 ? 933 100.00 ? 5 2.27 2.44 ? ? ? 0.141 ? ? 1.400 20.10 ? 930 100.00 ? 6 2.44 2.69 ? ? ? 0.115 ? ? 1.387 19.90 ? 932 100.00 ? 7 2.69 3.08 ? ? ? 0.080 ? ? 1.602 19.60 ? 960 100.00 ? 8 3.08 3.88 ? ? ? 0.063 ? ? 2.501 18.70 ? 980 99.80 ? 9 3.88 40.00 ? ? ? 0.042 ? ? 1.884 16.70 ? 1128 99.30 ? 10 # _refine.entry_id 3HM5 _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 19.905 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.040 _refine.ls_number_reflns_obs 9080 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY. Structure was solved in I4122 spacegroup using SIRAS, using a thimerosal-soaked sample as "native" and a tetrabromoplatinate derivative. DM and RESOLVE were used for NCS averaging after a rough outline of the protein chain was traced in the initial map. Preliminary model was placed into refinement space group using PHASER. The model was automatically updated with ARP/WARP and further refined/validated wit REFMAC/MOLPROBITY. ; _refine.ls_R_factor_obs 0.225 _refine.ls_R_factor_R_work 0.223 _refine.ls_wR_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.275 _refine.ls_wR_factor_R_free 0.254 _refine.ls_percent_reflns_R_free 4.769 _refine.ls_number_reflns_R_free 433 _refine.B_iso_mean 17.685 _refine.aniso_B[1][1] 0.121 _refine.aniso_B[2][2] 0.121 _refine.aniso_B[3][3] -0.181 _refine.aniso_B[1][2] 0.060 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.937 _refine.correlation_coeff_Fo_to_Fc_free 0.898 _refine.pdbx_overall_ESU_R 0.141 _refine.pdbx_overall_ESU_R_Free 0.143 _refine.overall_SU_ML 0.090 _refine.overall_SU_B 2.851 _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.B_iso_max 53.98 _refine.B_iso_min 2.00 _refine.occupancy_max 1.00 _refine.occupancy_min 0.01 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 644 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 687 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 19.905 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 665 0.015 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 441 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 905 1.455 1.905 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1050 0.960 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 76 6.521 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41 29.836 22.195 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 101 11.336 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 17.197 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 93 0.097 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 759 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 167 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 379 1.080 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 149 0.302 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 608 1.927 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 286 2.762 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 296 4.439 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 1.846 1.800 661 75.794 470 0.344 31 0.466 . . . . . 'X-RAY DIFFRACTION' 20 1.897 1.846 636 88.679 537 0.297 27 0.404 . . . . . 'X-RAY DIFFRACTION' 20 1.951 1.897 617 94.003 551 0.242 29 0.334 . . . . . 'X-RAY DIFFRACTION' 20 2.010 1.951 622 99.035 581 0.244 35 0.316 . . . . . 'X-RAY DIFFRACTION' 20 2.076 2.010 584 99.829 553 0.215 30 0.269 . . . . . 'X-RAY DIFFRACTION' 20 2.148 2.076 597 100.000 573 0.205 24 0.249 . . . . . 'X-RAY DIFFRACTION' 20 2.228 2.148 529 100.000 506 0.189 23 0.181 . . . . . 'X-RAY DIFFRACTION' 20 2.317 2.228 553 100.000 527 0.192 26 0.218 . . . . . 'X-RAY DIFFRACTION' 20 2.419 2.317 531 100.000 512 0.204 19 0.258 . . . . . 'X-RAY DIFFRACTION' 20 2.535 2.419 490 100.000 463 0.213 27 0.237 . . . . . 'X-RAY DIFFRACTION' 20 2.670 2.535 479 100.000 459 0.207 20 0.285 . . . . . 'X-RAY DIFFRACTION' 20 2.829 2.670 458 100.000 438 0.226 20 0.343 . . . . . 'X-RAY DIFFRACTION' 20 3.020 2.829 446 100.000 416 0.233 30 0.299 . . . . . 'X-RAY DIFFRACTION' 20 3.255 3.020 397 100.000 372 0.230 25 0.309 . . . . . 'X-RAY DIFFRACTION' 20 3.557 3.255 392 100.000 378 0.208 14 0.328 . . . . . 'X-RAY DIFFRACTION' 20 3.961 3.557 355 100.000 341 0.198 14 0.252 . . . . . 'X-RAY DIFFRACTION' 20 4.543 3.961 328 100.000 317 0.195 11 0.150 . . . . . 'X-RAY DIFFRACTION' 20 5.494 4.543 269 100.000 256 0.221 13 0.195 . . . . . 'X-RAY DIFFRACTION' 20 7.489 5.494 240 100.000 232 0.284 8 0.455 . . . . . 'X-RAY DIFFRACTION' 20 19.905 7.489 173 99.422 165 0.292 7 0.313 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3HM5 _struct.title 'SANT domain of human DNA methyltransferase 1 associated protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HM5 _struct_keywords.text ;DNA methylation, chromatin, Structural Genomics Consortium, SGC, Activator, Chromatin regulator, Coiled coil, Growth regulation, Nucleus, Phosphoprotein, Repressor, Transcription, Transcription regulation ; _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DMAP1_HUMAN _struct_ref.pdbx_db_accession Q9NPF5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA KLANVRAVPGTD ; _struct_ref.pdbx_align_begin 121 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HM5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 93 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NPF5 _struct_ref_seq.db_align_beg 121 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 212 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 121 _struct_ref_seq.pdbx_auth_seq_align_end 212 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3HM5 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9NPF5 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 120 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 20 ? LEU A 28 ? SER A 139 LEU A 147 1 ? 9 HELX_P HELX_P2 2 THR A 34 ? PHE A 48 ? THR A 153 PHE A 167 1 ? 15 HELX_P HELX_P3 3 ARG A 51 ? TYR A 59 ? ARG A 170 TYR A 178 1 ? 9 HELX_P HELX_P4 4 SER A 68 ? ARG A 87 ? SER A 187 ARG A 206 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B CA . CA ? ? ? 1_555 A ARG 46 O ? ? A CA 1 A ARG 165 1_555 ? ? ? ? ? ? ? 2.484 ? ? metalc2 metalc ? ? B CA . CA ? ? ? 1_555 A ASP 49 OD1 ? ? A CA 1 A ASP 168 1_555 ? ? ? ? ? ? ? 2.722 ? ? metalc3 metalc ? ? B CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 1 A HOH 214 1_555 ? ? ? ? ? ? ? 2.484 ? ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 1 A HOH 215 1_555 ? ? ? ? ? ? ? 2.550 ? ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 1 A HOH 216 1_555 ? ? ? ? ? ? ? 2.779 ? ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 1 A HOH 217 1_555 ? ? ? ? ? ? ? 2.549 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ARG 46 ? A ARG 165 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD1 ? A ASP 49 ? A ASP 168 ? 1_555 83.6 ? 2 O ? A ARG 46 ? A ARG 165 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 214 ? 1_555 154.9 ? 3 OD1 ? A ASP 49 ? A ASP 168 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 214 ? 1_555 96.8 ? 4 O ? A ARG 46 ? A ARG 165 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 215 ? 1_555 134.5 ? 5 OD1 ? A ASP 49 ? A ASP 168 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 215 ? 1_555 57.2 ? 6 O ? H HOH . ? A HOH 214 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 215 ? 1_555 61.5 ? 7 O ? A ARG 46 ? A ARG 165 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 216 ? 1_555 78.4 ? 8 OD1 ? A ASP 49 ? A ASP 168 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 216 ? 1_555 94.1 ? 9 O ? H HOH . ? A HOH 214 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 216 ? 1_555 126.5 ? 10 O ? H HOH . ? A HOH 215 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 216 ? 1_555 82.2 ? 11 O ? A ARG 46 ? A ARG 165 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 217 ? 1_555 79.5 ? 12 OD1 ? A ASP 49 ? A ASP 168 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 217 ? 1_555 94.5 ? 13 O ? H HOH . ? A HOH 214 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 217 ? 1_555 75.4 ? 14 O ? H HOH . ? A HOH 215 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 217 ? 1_555 121.8 ? 15 O ? H HOH . ? A HOH 216 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? H HOH . ? A HOH 217 ? 1_555 155.2 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CA _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE CA A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ARG A 46 ? ARG A 165 . ? 1_555 ? 2 AC1 7 ASP A 49 ? ASP A 168 . ? 1_555 ? 3 AC1 7 ASP A 57 ? ASP A 176 . ? 8_665 ? 4 AC1 7 HOH H . ? HOH A 214 . ? 1_555 ? 5 AC1 7 HOH H . ? HOH A 215 . ? 1_555 ? 6 AC1 7 HOH H . ? HOH A 216 . ? 1_555 ? 7 AC1 7 HOH H . ? HOH A 217 . ? 1_555 ? # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id UNX _pdbx_struct_special_symmetry.auth_seq_id 4 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id UNX _pdbx_struct_special_symmetry.label_seq_id . # loop_ _diffrn_reflns.diffrn_id _diffrn_reflns.pdbx_d_res_high _diffrn_reflns.pdbx_d_res_low _diffrn_reflns.pdbx_number_obs _diffrn_reflns.pdbx_Rmerge_I_obs _diffrn_reflns.pdbx_Rsym_value _diffrn_reflns.pdbx_chi_squared _diffrn_reflns.av_sigmaI_over_netI _diffrn_reflns.pdbx_redundancy _diffrn_reflns.pdbx_percent_possible_obs _diffrn_reflns.number _diffrn_reflns.pdbx_observed_criterion _diffrn_reflns.limit_h_max _diffrn_reflns.limit_h_min _diffrn_reflns.limit_k_max _diffrn_reflns.limit_k_min _diffrn_reflns.limit_l_max _diffrn_reflns.limit_l_min 1 2.800 30.000 39689 0.058 ? 1.66 44.47 7.60 100.00 300995 ? ? ? ? ? ? ? 2 2.800 30.000 21389 0.061 ? 1.76 44.47 12.10 98.80 259196 ? ? ? ? ? ? ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 6.02 30.00 ? ? 0.039 ? 2.188 7.80 99.90 1 4.78 6.02 ? ? 0.051 ? 2.515 7.70 100.00 1 4.18 4.78 ? ? 0.050 ? 2.115 7.80 100.00 1 3.80 4.18 ? ? 0.055 ? 1.787 7.80 100.00 1 3.53 3.80 ? ? 0.067 ? 1.812 7.80 100.00 1 3.32 3.53 ? ? 0.084 ? 1.406 7.80 100.00 1 3.15 3.32 ? ? 0.112 ? 1.251 7.80 100.00 1 3.02 3.15 ? ? 0.186 ? 1.132 7.70 100.00 1 2.90 3.02 ? ? 0.282 ? 1.149 7.30 100.00 1 2.80 2.90 ? ? 0.365 ? 1.086 6.20 99.60 2 6.02 30.00 ? ? 0.035 ? 2.025 13.20 99.90 2 4.78 6.02 ? ? 0.046 ? 2.044 13.90 100.00 2 4.18 4.78 ? ? 0.052 ? 2.032 14.10 100.00 2 3.80 4.18 ? ? 0.071 ? 1.829 14.00 100.00 2 3.53 3.80 ? ? 0.104 ? 2.058 13.70 100.00 2 3.32 3.53 ? ? 0.150 ? 1.686 13.50 100.00 2 3.15 3.32 ? ? 0.210 ? 1.461 13.30 100.00 2 3.02 3.15 ? ? 0.364 ? 1.249 12.40 100.00 2 2.90 3.02 ? ? 0.499 ? 1.210 8.00 99.50 2 2.80 2.90 ? ? 0.516 ? 1.064 3.60 88.30 # _phasing.method SIRAS # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 120 ? A GLY 1 2 1 Y 1 A GLY 121 ? A GLY 2 3 1 Y 1 A LYS 122 ? A LYS 3 4 1 Y 1 A ASP 123 ? A ASP 4 5 1 Y 1 A TYR 124 ? A TYR 5 6 1 Y 1 A PRO 125 ? A PRO 6 7 1 Y 1 A PHE 126 ? A PHE 7 8 1 Y 1 A ALA 127 ? A ALA 8 9 1 Y 1 A ARG 128 ? A ARG 9 10 1 Y 1 A PHE 129 ? A PHE 10 11 1 Y 1 A ASN 130 ? A ASN 11 12 1 Y 1 A LYS 131 ? A LYS 12 13 1 Y 1 A THR 132 ? A THR 13 14 1 Y 1 A VAL 133 ? A VAL 14 15 1 Y 1 A VAL 208 ? A VAL 89 16 1 Y 1 A PRO 209 ? A PRO 90 17 1 Y 1 A GLY 210 ? A GLY 91 18 1 Y 1 A THR 211 ? A THR 92 19 1 Y 1 A ASP 212 ? A ASP 93 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 PHE N N N N 231 PHE CA C N S 232 PHE C C N N 233 PHE O O N N 234 PHE CB C N N 235 PHE CG C Y N 236 PHE CD1 C Y N 237 PHE CD2 C Y N 238 PHE CE1 C Y N 239 PHE CE2 C Y N 240 PHE CZ C Y N 241 PHE OXT O N N 242 PHE H H N N 243 PHE H2 H N N 244 PHE HA H N N 245 PHE HB2 H N N 246 PHE HB3 H N N 247 PHE HD1 H N N 248 PHE HD2 H N N 249 PHE HE1 H N N 250 PHE HE2 H N N 251 PHE HZ H N N 252 PHE HXT H N N 253 PRO N N N N 254 PRO CA C N S 255 PRO C C N N 256 PRO O O N N 257 PRO CB C N N 258 PRO CG C N N 259 PRO CD C N N 260 PRO OXT O N N 261 PRO H H N N 262 PRO HA H N N 263 PRO HB2 H N N 264 PRO HB3 H N N 265 PRO HG2 H N N 266 PRO HG3 H N N 267 PRO HD2 H N N 268 PRO HD3 H N N 269 PRO HXT H N N 270 SER N N N N 271 SER CA C N S 272 SER C C N N 273 SER O O N N 274 SER CB C N N 275 SER OG O N N 276 SER OXT O N N 277 SER H H N N 278 SER H2 H N N 279 SER HA H N N 280 SER HB2 H N N 281 SER HB3 H N N 282 SER HG H N N 283 SER HXT H N N 284 THR N N N N 285 THR CA C N S 286 THR C C N N 287 THR O O N N 288 THR CB C N R 289 THR OG1 O N N 290 THR CG2 C N N 291 THR OXT O N N 292 THR H H N N 293 THR H2 H N N 294 THR HA H N N 295 THR HB H N N 296 THR HG1 H N N 297 THR HG21 H N N 298 THR HG22 H N N 299 THR HG23 H N N 300 THR HXT H N N 301 TRP N N N N 302 TRP CA C N S 303 TRP C C N N 304 TRP O O N N 305 TRP CB C N N 306 TRP CG C Y N 307 TRP CD1 C Y N 308 TRP CD2 C Y N 309 TRP NE1 N Y N 310 TRP CE2 C Y N 311 TRP CE3 C Y N 312 TRP CZ2 C Y N 313 TRP CZ3 C Y N 314 TRP CH2 C Y N 315 TRP OXT O N N 316 TRP H H N N 317 TRP H2 H N N 318 TRP HA H N N 319 TRP HB2 H N N 320 TRP HB3 H N N 321 TRP HD1 H N N 322 TRP HE1 H N N 323 TRP HE3 H N N 324 TRP HZ2 H N N 325 TRP HZ3 H N N 326 TRP HH2 H N N 327 TRP HXT H N N 328 TYR N N N N 329 TYR CA C N S 330 TYR C C N N 331 TYR O O N N 332 TYR CB C N N 333 TYR CG C Y N 334 TYR CD1 C Y N 335 TYR CD2 C Y N 336 TYR CE1 C Y N 337 TYR CE2 C Y N 338 TYR CZ C Y N 339 TYR OH O N N 340 TYR OXT O N N 341 TYR H H N N 342 TYR H2 H N N 343 TYR HA H N N 344 TYR HB2 H N N 345 TYR HB3 H N N 346 TYR HD1 H N N 347 TYR HD2 H N N 348 TYR HE1 H N N 349 TYR HE2 H N N 350 TYR HH H N N 351 TYR HXT H N N 352 VAL N N N N 353 VAL CA C N S 354 VAL C C N N 355 VAL O O N N 356 VAL CB C N N 357 VAL CG1 C N N 358 VAL CG2 C N N 359 VAL OXT O N N 360 VAL H H N N 361 VAL H2 H N N 362 VAL HA H N N 363 VAL HB H N N 364 VAL HG11 H N N 365 VAL HG12 H N N 366 VAL HG13 H N N 367 VAL HG21 H N N 368 VAL HG22 H N N 369 VAL HG23 H N N 370 VAL HXT H N N 371 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 PHE N CA sing N N 218 PHE N H sing N N 219 PHE N H2 sing N N 220 PHE CA C sing N N 221 PHE CA CB sing N N 222 PHE CA HA sing N N 223 PHE C O doub N N 224 PHE C OXT sing N N 225 PHE CB CG sing N N 226 PHE CB HB2 sing N N 227 PHE CB HB3 sing N N 228 PHE CG CD1 doub Y N 229 PHE CG CD2 sing Y N 230 PHE CD1 CE1 sing Y N 231 PHE CD1 HD1 sing N N 232 PHE CD2 CE2 doub Y N 233 PHE CD2 HD2 sing N N 234 PHE CE1 CZ doub Y N 235 PHE CE1 HE1 sing N N 236 PHE CE2 CZ sing Y N 237 PHE CE2 HE2 sing N N 238 PHE CZ HZ sing N N 239 PHE OXT HXT sing N N 240 PRO N CA sing N N 241 PRO N CD sing N N 242 PRO N H sing N N 243 PRO CA C sing N N 244 PRO CA CB sing N N 245 PRO CA HA sing N N 246 PRO C O doub N N 247 PRO C OXT sing N N 248 PRO CB CG sing N N 249 PRO CB HB2 sing N N 250 PRO CB HB3 sing N N 251 PRO CG CD sing N N 252 PRO CG HG2 sing N N 253 PRO CG HG3 sing N N 254 PRO CD HD2 sing N N 255 PRO CD HD3 sing N N 256 PRO OXT HXT sing N N 257 SER N CA sing N N 258 SER N H sing N N 259 SER N H2 sing N N 260 SER CA C sing N N 261 SER CA CB sing N N 262 SER CA HA sing N N 263 SER C O doub N N 264 SER C OXT sing N N 265 SER CB OG sing N N 266 SER CB HB2 sing N N 267 SER CB HB3 sing N N 268 SER OG HG sing N N 269 SER OXT HXT sing N N 270 THR N CA sing N N 271 THR N H sing N N 272 THR N H2 sing N N 273 THR CA C sing N N 274 THR CA CB sing N N 275 THR CA HA sing N N 276 THR C O doub N N 277 THR C OXT sing N N 278 THR CB OG1 sing N N 279 THR CB CG2 sing N N 280 THR CB HB sing N N 281 THR OG1 HG1 sing N N 282 THR CG2 HG21 sing N N 283 THR CG2 HG22 sing N N 284 THR CG2 HG23 sing N N 285 THR OXT HXT sing N N 286 TRP N CA sing N N 287 TRP N H sing N N 288 TRP N H2 sing N N 289 TRP CA C sing N N 290 TRP CA CB sing N N 291 TRP CA HA sing N N 292 TRP C O doub N N 293 TRP C OXT sing N N 294 TRP CB CG sing N N 295 TRP CB HB2 sing N N 296 TRP CB HB3 sing N N 297 TRP CG CD1 doub Y N 298 TRP CG CD2 sing Y N 299 TRP CD1 NE1 sing Y N 300 TRP CD1 HD1 sing N N 301 TRP CD2 CE2 doub Y N 302 TRP CD2 CE3 sing Y N 303 TRP NE1 CE2 sing Y N 304 TRP NE1 HE1 sing N N 305 TRP CE2 CZ2 sing Y N 306 TRP CE3 CZ3 doub Y N 307 TRP CE3 HE3 sing N N 308 TRP CZ2 CH2 doub Y N 309 TRP CZ2 HZ2 sing N N 310 TRP CZ3 CH2 sing Y N 311 TRP CZ3 HZ3 sing N N 312 TRP CH2 HH2 sing N N 313 TRP OXT HXT sing N N 314 TYR N CA sing N N 315 TYR N H sing N N 316 TYR N H2 sing N N 317 TYR CA C sing N N 318 TYR CA CB sing N N 319 TYR CA HA sing N N 320 TYR C O doub N N 321 TYR C OXT sing N N 322 TYR CB CG sing N N 323 TYR CB HB2 sing N N 324 TYR CB HB3 sing N N 325 TYR CG CD1 doub Y N 326 TYR CG CD2 sing Y N 327 TYR CD1 CE1 sing Y N 328 TYR CD1 HD1 sing N N 329 TYR CD2 CE2 doub Y N 330 TYR CD2 HD2 sing N N 331 TYR CE1 CZ doub Y N 332 TYR CE1 HE1 sing N N 333 TYR CE2 CZ sing Y N 334 TYR CE2 HE2 sing N N 335 TYR CZ OH sing N N 336 TYR OH HH sing N N 337 TYR OXT HXT sing N N 338 VAL N CA sing N N 339 VAL N H sing N N 340 VAL N H2 sing N N 341 VAL CA C sing N N 342 VAL CA CB sing N N 343 VAL CA HA sing N N 344 VAL C O doub N N 345 VAL C OXT sing N N 346 VAL CB CG1 sing N N 347 VAL CB CG2 sing N N 348 VAL CB HB sing N N 349 VAL CG1 HG11 sing N N 350 VAL CG1 HG12 sing N N 351 VAL CG1 HG13 sing N N 352 VAL CG2 HG21 sing N N 353 VAL CG2 HG22 sing N N 354 VAL CG2 HG23 sing N N 355 VAL OXT HXT sing N N 356 # _atom_sites.entry_id 3HM5 _atom_sites.fract_transf_matrix[1][1] 0.027380 _atom_sites.fract_transf_matrix[1][2] 0.015808 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031616 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004338 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O S X # loop_