HEADER SIGNALING PROTEIN 29-MAY-09 3HME TITLE CRYSTAL STRUCTURE OF HUMAN BROMODOMAIN CONTAINING 9 ISOFORM 1 (BRD9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 9; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BROMODOMAIN, UNP RESIDUES 14-134; COMPND 5 SYNONYM: BRD9, RHABDOMYOSARCOMA ANTIGEN MU-RMS-40.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD9, UNQ3040/PRO9856; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS BRD9, BROMODOMAIN CONTAINING 9 ISOFORM 1, LAVS3040, PRO9856, KEYWDS 2 RHABDOMYOSARCOMA ANTIGEN MU-RMS-40.8, SARCOMA ANTIGEN NY-SAR-29, KEYWDS 3 BROMODOMAIN, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 4 SGC, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,J.ESWARAN,T.KEATES,S.PICAUD,A.ROOS,A.CHAIKUAD,F.VON AUTHOR 2 DELFT,C.H.ARROWSMITH,A.EDWARDS,J.WEIGELT,C.BOUNTRA,S.KNAPP, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 01-NOV-23 3HME 1 SEQADV REVDAT 3 11-APR-12 3HME 1 JRNL REVDAT 2 13-JUL-11 3HME 1 VERSN REVDAT 1 23-JUN-09 3HME 0 JRNL AUTH P.FILIPPAKOPOULOS,S.PICAUD,M.MANGOS,T.KEATES,J.P.LAMBERT, JRNL AUTH 2 D.BARSYTE-LOVEJOY,I.FELLETAR,R.VOLKMER,S.MULLER,T.PAWSON, JRNL AUTH 3 A.C.GINGRAS,C.H.ARROWSMITH,S.KNAPP JRNL TITL HISTONE RECOGNITION AND LARGE-SCALE STRUCTURAL ANALYSIS OF JRNL TITL 2 THE HUMAN BROMODOMAIN FAMILY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 149 214 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 22464331 JRNL DOI 10.1016/J.CELL.2012.02.013 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 13387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 680 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 603 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.4290 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.4790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1817 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 42.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.96000 REMARK 3 B22 (A**2) : -2.75000 REMARK 3 B33 (A**2) : 0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.306 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1876 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1318 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2525 ; 1.459 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3213 ; 0.868 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 229 ; 5.043 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;37.849 ;23.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 346 ;14.209 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.852 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2037 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 393 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1143 ; 3.963 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 450 ; 1.592 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1843 ; 5.661 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 733 ; 7.849 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 680 ; 9.938 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 26 A 37 1 REMARK 3 1 B 26 B 37 1 REMARK 3 2 A 38 A 64 4 REMARK 3 2 B 38 B 64 4 REMARK 3 3 A 65 A 114 2 REMARK 3 3 B 65 B 114 2 REMARK 3 4 A 115 A 130 4 REMARK 3 4 B 115 B 130 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 483 ; 0.220 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 942 ; 0.390 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 483 ; 1.310 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 942 ; 1.360 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): 60.5736 9.3483 24.5553 REMARK 3 T TENSOR REMARK 3 T11: 0.3191 T22: 0.7915 REMARK 3 T33: 0.4277 T12: -0.2869 REMARK 3 T13: 0.1606 T23: -0.1129 REMARK 3 L TENSOR REMARK 3 L11: 1.0241 L22: 7.9575 REMARK 3 L33: 0.3635 L12: 1.5285 REMARK 3 L13: 0.4324 L23: 0.7827 REMARK 3 S TENSOR REMARK 3 S11: -0.0970 S12: -0.0224 S13: -0.1909 REMARK 3 S21: -0.4570 S22: 0.2481 S23: -1.3346 REMARK 3 S31: -0.1848 S32: 0.3682 S33: -0.1510 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 53.8151 3.2407 20.6252 REMARK 3 T TENSOR REMARK 3 T11: 0.4134 T22: 0.3571 REMARK 3 T33: 0.1841 T12: -0.1119 REMARK 3 T13: 0.0429 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.7663 L22: 3.5702 REMARK 3 L33: 1.6026 L12: 0.9508 REMARK 3 L13: -0.4768 L23: 1.0849 REMARK 3 S TENSOR REMARK 3 S11: -0.0700 S12: 0.1437 S13: 0.1147 REMARK 3 S21: -0.9709 S22: 0.2375 S23: -0.0654 REMARK 3 S31: -0.3599 S32: 0.5341 S33: -0.1675 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 49.7620 14.2647 30.0138 REMARK 3 T TENSOR REMARK 3 T11: 0.2169 T22: 0.2323 REMARK 3 T33: 0.2492 T12: -0.1256 REMARK 3 T13: 0.0639 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.2596 L22: 11.4437 REMARK 3 L33: 0.7450 L12: -0.3708 REMARK 3 L13: -0.1611 L23: -1.9559 REMARK 3 S TENSOR REMARK 3 S11: 0.0952 S12: -0.0187 S13: 0.1908 REMARK 3 S21: 0.0460 S22: 0.1181 S23: -0.0391 REMARK 3 S31: -0.2141 S32: 0.2040 S33: -0.2133 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 49 REMARK 3 ORIGIN FOR THE GROUP (A): 66.7530 35.6808 22.4959 REMARK 3 T TENSOR REMARK 3 T11: 0.2067 T22: 0.0861 REMARK 3 T33: 0.2388 T12: 0.0699 REMARK 3 T13: 0.1178 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 4.5560 L22: 9.5989 REMARK 3 L33: 2.9557 L12: 3.4180 REMARK 3 L13: 0.4829 L23: 0.7315 REMARK 3 S TENSOR REMARK 3 S11: -0.2202 S12: 0.1793 S13: -0.4892 REMARK 3 S21: -0.1922 S22: 0.1101 S23: -0.6854 REMARK 3 S31: 0.5686 S32: 0.1001 S33: 0.1101 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 50 B 103 REMARK 3 ORIGIN FOR THE GROUP (A): 64.7537 47.0292 26.3259 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.1359 REMARK 3 T33: 0.2054 T12: -0.0010 REMARK 3 T13: 0.0562 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.9858 L22: 3.6968 REMARK 3 L33: 1.5255 L12: 1.0954 REMARK 3 L13: 0.2361 L23: -0.3112 REMARK 3 S TENSOR REMARK 3 S11: -0.1347 S12: -0.0819 S13: -0.1744 REMARK 3 S21: 0.1901 S22: -0.0252 S23: -0.1362 REMARK 3 S31: 0.1644 S32: 0.0562 S33: 0.1599 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 104 B 134 REMARK 3 ORIGIN FOR THE GROUP (A): 59.4857 40.0184 14.8731 REMARK 3 T TENSOR REMARK 3 T11: 0.2591 T22: 0.1108 REMARK 3 T33: 0.1311 T12: -0.0381 REMARK 3 T13: 0.0610 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 6.8945 L22: 10.0145 REMARK 3 L33: 2.1478 L12: 6.2369 REMARK 3 L13: -0.4241 L23: -2.2396 REMARK 3 S TENSOR REMARK 3 S11: -0.1882 S12: 0.1891 S13: -0.1703 REMARK 3 S21: -0.4511 S22: 0.2472 S23: 0.0548 REMARK 3 S31: 0.5306 S32: -0.0959 S33: -0.0590 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3HME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13436 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 35.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.59800 REMARK 200 R SYM FOR SHELL (I) : 0.59800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.2, DM 6.0 REMARK 200 STARTING MODEL: 2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25.5% PEG 3350, 0.17M (NH4)2SO4, 15% REMARK 280 GLYC, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.63200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.29300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.63200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.29300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 12 REMARK 465 MET A 13 REMARK 465 LEU A 14 REMARK 465 LYS A 15 REMARK 465 LEU A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 GLU A 19 REMARK 465 ASN A 20 REMARK 465 GLU A 21 REMARK 465 SER B 12 REMARK 465 MET B 13 REMARK 465 LEU B 14 REMARK 465 LYS B 15 REMARK 465 LEU B 16 REMARK 465 SER B 17 REMARK 465 ALA B 18 REMARK 465 GLU B 19 REMARK 465 ASN B 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 LYS A 119 CD CE NZ REMARK 470 LYS A 123 CD CE NZ REMARK 470 GLU B 21 CG CD OE1 OE2 REMARK 470 LYS B 62 CE NZ REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 GLU B 124 CD OE1 OE2 REMARK 470 MET B 133 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 54 86.12 -152.00 REMARK 500 ASP B 40 65.09 -119.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HMF RELATED DB: PDB REMARK 900 RELATED ID: 3HMH RELATED DB: PDB DBREF 3HME A 14 134 UNP Q9H8M2 BRD9_HUMAN 14 134 DBREF 3HME B 14 134 UNP Q9H8M2 BRD9_HUMAN 14 134 SEQADV 3HME SER A 12 UNP Q9H8M2 EXPRESSION TAG SEQADV 3HME MET A 13 UNP Q9H8M2 EXPRESSION TAG SEQADV 3HME SER B 12 UNP Q9H8M2 EXPRESSION TAG SEQADV 3HME MET B 13 UNP Q9H8M2 EXPRESSION TAG SEQRES 1 A 123 SER MET LEU LYS LEU SER ALA GLU ASN GLU SER THR PRO SEQRES 2 A 123 ILE GLN GLN LEU LEU GLU HIS PHE LEU ARG GLN LEU GLN SEQRES 3 A 123 ARG LYS ASP PRO HIS GLY PHE PHE ALA PHE PRO VAL THR SEQRES 4 A 123 ASP ALA ILE ALA PRO GLY TYR SER MET ILE ILE LYS HIS SEQRES 5 A 123 PRO MET ASP PHE GLY THR MET LYS ASP LYS ILE VAL ALA SEQRES 6 A 123 ASN GLU TYR LYS SER VAL THR GLU PHE LYS ALA ASP PHE SEQRES 7 A 123 LYS LEU MET CYS ASP ASN ALA MET THR TYR ASN ARG PRO SEQRES 8 A 123 ASP THR VAL TYR TYR LYS LEU ALA LYS LYS ILE LEU HIS SEQRES 9 A 123 ALA GLY PHE LYS MET MET SER LYS GLU ARG LEU LEU ALA SEQRES 10 A 123 LEU LYS ARG SER MET SER SEQRES 1 B 123 SER MET LEU LYS LEU SER ALA GLU ASN GLU SER THR PRO SEQRES 2 B 123 ILE GLN GLN LEU LEU GLU HIS PHE LEU ARG GLN LEU GLN SEQRES 3 B 123 ARG LYS ASP PRO HIS GLY PHE PHE ALA PHE PRO VAL THR SEQRES 4 B 123 ASP ALA ILE ALA PRO GLY TYR SER MET ILE ILE LYS HIS SEQRES 5 B 123 PRO MET ASP PHE GLY THR MET LYS ASP LYS ILE VAL ALA SEQRES 6 B 123 ASN GLU TYR LYS SER VAL THR GLU PHE LYS ALA ASP PHE SEQRES 7 B 123 LYS LEU MET CYS ASP ASN ALA MET THR TYR ASN ARG PRO SEQRES 8 B 123 ASP THR VAL TYR TYR LYS LEU ALA LYS LYS ILE LEU HIS SEQRES 9 B 123 ALA GLY PHE LYS MET MET SER LYS GLU ARG LEU LEU ALA SEQRES 10 B 123 LEU LYS ARG SER MET SER FORMUL 3 HOH *111(H2 O) HELIX 1 1 THR A 23 ARG A 38 1 16 HELIX 2 2 GLY A 56 ILE A 61 1 6 HELIX 3 3 ASP A 66 ALA A 76 1 11 HELIX 4 4 SER A 81 ASN A 100 1 20 HELIX 5 5 THR A 104 MET A 121 1 18 HELIX 6 6 SER A 122 SER A 132 1 11 HELIX 7 7 THR B 23 ARG B 38 1 16 HELIX 8 8 GLY B 56 ILE B 61 1 6 HELIX 9 9 ASP B 66 ALA B 76 1 11 HELIX 10 10 SER B 81 ASN B 100 1 20 HELIX 11 11 THR B 104 MET B 121 1 18 HELIX 12 12 SER B 122 MET B 133 1 12 CRYST1 71.264 124.586 30.082 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014032 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008027 0.000000 0.00000 SCALE3 0.000000 0.000000 0.033243 0.00000