data_3HMF # _entry.id 3HMF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HMF pdb_00003hmf 10.2210/pdb3hmf/pdb RCSB RCSB053313 ? ? WWPDB D_1000053313 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3HME . unspecified PDB 3HMH . unspecified # _pdbx_database_status.entry_id 3HMF _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-05-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippakopoulos, P.' 1 'Picaud, S.' 2 'Keates, T.' 3 'Muniz, J.' 4 'von Delft, F.' 5 'Arrowsmith, C.H.' 6 'Edwards, A.' 7 'Weigelt, J.' 8 'Bountra, C.' 9 'Knapp, S.' 10 'Structural Genomics Consortium (SGC)' 11 # _citation.id primary _citation.title 'Histone recognition and large-scale structural analysis of the human bromodomain family.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 149 _citation.page_first 214 _citation.page_last 231 _citation.year 2012 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22464331 _citation.pdbx_database_id_DOI 10.1016/j.cell.2012.02.013 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Filippakopoulos, P.' 1 ? primary 'Picaud, S.' 2 ? primary 'Mangos, M.' 3 ? primary 'Keates, T.' 4 ? primary 'Lambert, J.P.' 5 ? primary 'Barsyte-Lovejoy, D.' 6 ? primary 'Felletar, I.' 7 ? primary 'Volkmer, R.' 8 ? primary 'Muller, S.' 9 ? primary 'Pawson, T.' 10 ? primary 'Gingras, A.C.' 11 ? primary 'Arrowsmith, C.H.' 12 ? primary 'Knapp, S.' 13 ? # _cell.length_a 85.810 _cell.length_b 49.360 _cell.length_c 33.610 _cell.angle_alpha 90.000 _cell.angle_beta 97.910 _cell.angle_gamma 90.000 _cell.entry_id 3HMF _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3HMF _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein polybromo-1' 13231.299 1 ? ? 'bromodomain, UNP residues 178-291' ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 5 water nat water 18.015 200 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PB1, hPB1, Polybromo-1D, BRG1-associated factor 180, BAF180' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMSPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLL AKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHE ; _entity_poly.pdbx_seq_one_letter_code_can ;SMSPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLL AKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 SER n 1 4 PRO n 1 5 ALA n 1 6 TYR n 1 7 LEU n 1 8 LYS n 1 9 GLU n 1 10 ILE n 1 11 LEU n 1 12 GLU n 1 13 GLN n 1 14 LEU n 1 15 LEU n 1 16 GLU n 1 17 ALA n 1 18 ILE n 1 19 VAL n 1 20 VAL n 1 21 ALA n 1 22 THR n 1 23 ASN n 1 24 PRO n 1 25 SER n 1 26 GLY n 1 27 ARG n 1 28 LEU n 1 29 ILE n 1 30 SER n 1 31 GLU n 1 32 LEU n 1 33 PHE n 1 34 GLN n 1 35 LYS n 1 36 LEU n 1 37 PRO n 1 38 SER n 1 39 LYS n 1 40 VAL n 1 41 GLN n 1 42 TYR n 1 43 PRO n 1 44 ASP n 1 45 TYR n 1 46 TYR n 1 47 ALA n 1 48 ILE n 1 49 ILE n 1 50 LYS n 1 51 GLU n 1 52 PRO n 1 53 ILE n 1 54 ASP n 1 55 LEU n 1 56 LYS n 1 57 THR n 1 58 ILE n 1 59 ALA n 1 60 GLN n 1 61 ARG n 1 62 ILE n 1 63 GLN n 1 64 ASN n 1 65 GLY n 1 66 SER n 1 67 TYR n 1 68 LYS n 1 69 SER n 1 70 ILE n 1 71 HIS n 1 72 ALA n 1 73 MET n 1 74 ALA n 1 75 LYS n 1 76 ASP n 1 77 ILE n 1 78 ASP n 1 79 LEU n 1 80 LEU n 1 81 ALA n 1 82 LYS n 1 83 ASN n 1 84 ALA n 1 85 LYS n 1 86 THR n 1 87 TYR n 1 88 ASN n 1 89 GLU n 1 90 PRO n 1 91 GLY n 1 92 SER n 1 93 GLN n 1 94 VAL n 1 95 PHE n 1 96 LYS n 1 97 ASP n 1 98 ALA n 1 99 ASN n 1 100 SER n 1 101 ILE n 1 102 LYS n 1 103 LYS n 1 104 ILE n 1 105 PHE n 1 106 TYR n 1 107 MET n 1 108 LYS n 1 109 LYS n 1 110 ALA n 1 111 GLU n 1 112 ILE n 1 113 GLU n 1 114 HIS n 1 115 HIS n 1 116 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PB1, PBRM1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-R3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PB1_HUMAN _struct_ref.pdbx_db_accession Q86U86 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK NAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHE ; _struct_ref.pdbx_align_begin 178 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HMF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 116 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q86U86 _struct_ref_seq.db_align_beg 178 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 291 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 178 _struct_ref_seq.pdbx_auth_seq_align_end 291 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3HMF SER A 1 ? UNP Q86U86 ? ? 'expression tag' 176 1 1 3HMF MET A 2 ? UNP Q86U86 ? ? 'expression tag' 177 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 3HMF _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.570 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.66 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 53.83 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.01M Zn_Cl, 15w/v PEG_6000, 10v/v ethylene_glycol, 5.5pH MES, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2009-01-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3HMF _reflns.d_resolution_high 1.630 _reflns.d_resolution_low 28.15 _reflns.number_all 17439 _reflns.number_obs 17021 _reflns.pdbx_Rsym_value 0.041 _reflns.pdbx_redundancy 3.600 _reflns.percent_possible_obs 97.600 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_netI_over_sigmaI 18.4 _reflns.B_iso_Wilson_estimate 18.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.63 _reflns_shell.d_res_low 1.72 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 92.8 _reflns_shell.Rmerge_I_obs 0.274 _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.pdbx_Rsym_value 0.274 _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.number_unique_all 2357 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3HMF _refine.ls_d_res_high 1.630 _refine.ls_d_res_low 27.177 _refine.pdbx_ls_sigma_F 0.06 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.310 _refine.ls_number_reflns_obs 16669 _refine.ls_number_reflns_all 17489 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all 0.172 _refine.ls_R_factor_obs 0.172 _refine.ls_R_factor_R_work 0.171 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.199 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.930 _refine.ls_number_reflns_R_free 821 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.614 _refine.solvent_model_param_bsol 51.312 _refine.solvent_model_param_ksol 0.355 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.601 _refine.aniso_B[2][2] 7.902 _refine.aniso_B[3][3] -5.301 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 1.609 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 1.300 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model '2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.892 _refine.B_iso_max 87.42 _refine.B_iso_min 7.55 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 924 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 200 _refine_hist.number_atoms_total 1132 _refine_hist.d_res_high 1.630 _refine_hist.d_res_low 27.177 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 963 0.005 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 1301 0.848 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 147 0.057 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 165 0.004 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 365 15.175 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.630 1.732 6 87.000 2389 . 0.178 0.193 . 126 . 2515 . . 'X-RAY DIFFRACTION' 1.732 1.866 6 92.000 2561 . 0.163 0.194 . 128 . 2689 . . 'X-RAY DIFFRACTION' 1.866 2.053 6 96.000 2657 . 0.154 0.179 . 125 . 2782 . . 'X-RAY DIFFRACTION' 2.053 2.351 6 98.000 2688 . 0.148 0.169 . 146 . 2834 . . 'X-RAY DIFFRACTION' 2.351 2.961 6 99.000 2747 . 0.163 0.202 . 139 . 2886 . . 'X-RAY DIFFRACTION' 2.961 27.181 6 100.000 2806 . 0.172 0.195 . 157 . 2963 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3HMF _struct.title 'Crystal Structure of the second Bromodomain of Human Poly-bromodomain containing protein 1 (PB1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HMF _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;PB1, polybromo 1 isoform 1, BAF180, Polybromo-1D, PBRM1, BRG1-associated factor 180, Bromodomain, Chromatin regulator, DNA-binding, Nucleus, Phosphoprotein, Transcription, Transcription regulation, Structural Genomics, Structural Genomics Consortium, SGC ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? ALA A 21 ? SER A 178 ALA A 196 1 ? 19 HELX_P HELX_P2 2 SER A 30 ? GLN A 34 ? SER A 205 GLN A 209 5 ? 5 HELX_P HELX_P3 3 TYR A 42 ? ILE A 49 ? TYR A 217 ILE A 224 1 ? 8 HELX_P HELX_P4 4 ASP A 54 ? GLY A 65 ? ASP A 229 GLY A 240 1 ? 12 HELX_P HELX_P5 5 SER A 69 ? ASN A 88 ? SER A 244 ASN A 263 1 ? 20 HELX_P HELX_P6 6 SER A 92 ? HIS A 115 ? SER A 267 HIS A 290 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B ZN . ZN ? ? ? 1_555 A HIS 114 NE2 ? ? A ZN 1 A HIS 289 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc2 metalc ? ? C ZN . ZN ? ? ? 1_555 A HIS 115 ND1 ? ? A ZN 2 A HIS 290 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc3 metalc ? ? C ZN . ZN ? ? ? 1_555 A GLU 116 OXT ? ? A ZN 2 A GLU 291 1_555 ? ? ? ? ? ? ? 2.028 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1 ? 4 'BINDING SITE FOR RESIDUE ZN A 1' AC2 Software A ZN 2 ? 4 'BINDING SITE FOR RESIDUE ZN A 2' AC3 Software A EDO 292 ? 8 'BINDING SITE FOR RESIDUE EDO A 292' AC4 Software A CL 293 ? 5 'BINDING SITE FOR RESIDUE CL A 293' AC5 Software A CL 294 ? 3 'BINDING SITE FOR RESIDUE CL A 294' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 71 ? HIS A 246 . ? 2_656 ? 2 AC1 4 HIS A 114 ? HIS A 289 . ? 1_555 ? 3 AC1 4 CL E . ? CL A 293 . ? 1_555 ? 4 AC1 4 CL F . ? CL A 294 . ? 1_555 ? 5 AC2 4 GLU A 9 ? GLU A 184 . ? 2_655 ? 6 AC2 4 GLU A 12 ? GLU A 187 . ? 2_655 ? 7 AC2 4 HIS A 115 ? HIS A 290 . ? 1_555 ? 8 AC2 4 GLU A 116 ? GLU A 291 . ? 1_555 ? 9 AC3 8 HOH G . ? HOH A 10 . ? 1_555 ? 10 AC3 8 TYR A 106 ? TYR A 281 . ? 2_656 ? 11 AC3 8 LYS A 109 ? LYS A 284 . ? 2_656 ? 12 AC3 8 LYS A 109 ? LYS A 284 . ? 1_555 ? 13 AC3 8 ALA A 110 ? ALA A 285 . ? 1_555 ? 14 AC3 8 GLU A 113 ? GLU A 288 . ? 1_555 ? 15 AC3 8 CL E . ? CL A 293 . ? 1_555 ? 16 AC3 8 HOH G . ? HOH A 321 . ? 1_555 ? 17 AC4 5 ZN B . ? ZN A 1 . ? 1_555 ? 18 AC4 5 HIS A 71 ? HIS A 246 . ? 2_656 ? 19 AC4 5 LYS A 109 ? LYS A 284 . ? 2_656 ? 20 AC4 5 HIS A 114 ? HIS A 289 . ? 1_555 ? 21 AC4 5 EDO D . ? EDO A 292 . ? 1_555 ? 22 AC5 3 ZN B . ? ZN A 1 . ? 1_555 ? 23 AC5 3 HIS A 71 ? HIS A 246 . ? 2_656 ? 24 AC5 3 HIS A 114 ? HIS A 289 . ? 1_555 ? # _atom_sites.entry_id 3HMF _atom_sites.fract_transf_matrix[1][1] 0.011654 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001619 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020259 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030039 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 176 176 SER SER A . n A 1 2 MET 2 177 177 MET MET A . n A 1 3 SER 3 178 178 SER SER A . n A 1 4 PRO 4 179 179 PRO PRO A . n A 1 5 ALA 5 180 180 ALA ALA A . n A 1 6 TYR 6 181 181 TYR TYR A . n A 1 7 LEU 7 182 182 LEU LEU A . n A 1 8 LYS 8 183 183 LYS LYS A . n A 1 9 GLU 9 184 184 GLU GLU A . n A 1 10 ILE 10 185 185 ILE ILE A . n A 1 11 LEU 11 186 186 LEU LEU A . n A 1 12 GLU 12 187 187 GLU GLU A . n A 1 13 GLN 13 188 188 GLN GLN A . n A 1 14 LEU 14 189 189 LEU LEU A . n A 1 15 LEU 15 190 190 LEU LEU A . n A 1 16 GLU 16 191 191 GLU GLU A . n A 1 17 ALA 17 192 192 ALA ALA A . n A 1 18 ILE 18 193 193 ILE ILE A . n A 1 19 VAL 19 194 194 VAL VAL A . n A 1 20 VAL 20 195 195 VAL VAL A . n A 1 21 ALA 21 196 196 ALA ALA A . n A 1 22 THR 22 197 197 THR THR A . n A 1 23 ASN 23 198 198 ASN ASN A . n A 1 24 PRO 24 199 199 PRO PRO A . n A 1 25 SER 25 200 200 SER SER A . n A 1 26 GLY 26 201 201 GLY GLY A . n A 1 27 ARG 27 202 202 ARG ARG A . n A 1 28 LEU 28 203 203 LEU LEU A . n A 1 29 ILE 29 204 204 ILE ILE A . n A 1 30 SER 30 205 205 SER SER A . n A 1 31 GLU 31 206 206 GLU GLU A . n A 1 32 LEU 32 207 207 LEU LEU A . n A 1 33 PHE 33 208 208 PHE PHE A . n A 1 34 GLN 34 209 209 GLN GLN A . n A 1 35 LYS 35 210 210 LYS LYS A . n A 1 36 LEU 36 211 211 LEU LEU A . n A 1 37 PRO 37 212 212 PRO PRO A . n A 1 38 SER 38 213 213 SER SER A . n A 1 39 LYS 39 214 214 LYS LYS A . n A 1 40 VAL 40 215 215 VAL VAL A . n A 1 41 GLN 41 216 216 GLN GLN A . n A 1 42 TYR 42 217 217 TYR TYR A . n A 1 43 PRO 43 218 218 PRO PRO A . n A 1 44 ASP 44 219 219 ASP ASP A . n A 1 45 TYR 45 220 220 TYR TYR A . n A 1 46 TYR 46 221 221 TYR TYR A . n A 1 47 ALA 47 222 222 ALA ALA A . n A 1 48 ILE 48 223 223 ILE ILE A . n A 1 49 ILE 49 224 224 ILE ILE A . n A 1 50 LYS 50 225 225 LYS LYS A . n A 1 51 GLU 51 226 226 GLU GLU A . n A 1 52 PRO 52 227 227 PRO PRO A . n A 1 53 ILE 53 228 228 ILE ILE A . n A 1 54 ASP 54 229 229 ASP ASP A . n A 1 55 LEU 55 230 230 LEU LEU A . n A 1 56 LYS 56 231 231 LYS LYS A . n A 1 57 THR 57 232 232 THR THR A . n A 1 58 ILE 58 233 233 ILE ILE A . n A 1 59 ALA 59 234 234 ALA ALA A . n A 1 60 GLN 60 235 235 GLN GLN A . n A 1 61 ARG 61 236 236 ARG ARG A . n A 1 62 ILE 62 237 237 ILE ILE A . n A 1 63 GLN 63 238 238 GLN GLN A . n A 1 64 ASN 64 239 239 ASN ASN A . n A 1 65 GLY 65 240 240 GLY GLY A . n A 1 66 SER 66 241 241 SER SER A . n A 1 67 TYR 67 242 242 TYR TYR A . n A 1 68 LYS 68 243 243 LYS LYS A . n A 1 69 SER 69 244 244 SER SER A . n A 1 70 ILE 70 245 245 ILE ILE A . n A 1 71 HIS 71 246 246 HIS HIS A . n A 1 72 ALA 72 247 247 ALA ALA A . n A 1 73 MET 73 248 248 MET MET A . n A 1 74 ALA 74 249 249 ALA ALA A . n A 1 75 LYS 75 250 250 LYS LYS A . n A 1 76 ASP 76 251 251 ASP ASP A . n A 1 77 ILE 77 252 252 ILE ILE A . n A 1 78 ASP 78 253 253 ASP ASP A . n A 1 79 LEU 79 254 254 LEU LEU A . n A 1 80 LEU 80 255 255 LEU LEU A . n A 1 81 ALA 81 256 256 ALA ALA A . n A 1 82 LYS 82 257 257 LYS LYS A . n A 1 83 ASN 83 258 258 ASN ASN A . n A 1 84 ALA 84 259 259 ALA ALA A . n A 1 85 LYS 85 260 260 LYS LYS A . n A 1 86 THR 86 261 261 THR THR A . n A 1 87 TYR 87 262 262 TYR TYR A . n A 1 88 ASN 88 263 263 ASN ASN A . n A 1 89 GLU 89 264 264 GLU GLU A . n A 1 90 PRO 90 265 265 PRO PRO A . n A 1 91 GLY 91 266 266 GLY GLY A . n A 1 92 SER 92 267 267 SER SER A . n A 1 93 GLN 93 268 268 GLN GLN A . n A 1 94 VAL 94 269 269 VAL VAL A . n A 1 95 PHE 95 270 270 PHE PHE A . n A 1 96 LYS 96 271 271 LYS LYS A . n A 1 97 ASP 97 272 272 ASP ASP A . n A 1 98 ALA 98 273 273 ALA ALA A . n A 1 99 ASN 99 274 274 ASN ASN A . n A 1 100 SER 100 275 275 SER SER A . n A 1 101 ILE 101 276 276 ILE ILE A . n A 1 102 LYS 102 277 277 LYS LYS A . n A 1 103 LYS 103 278 278 LYS LYS A . n A 1 104 ILE 104 279 279 ILE ILE A . n A 1 105 PHE 105 280 280 PHE PHE A . n A 1 106 TYR 106 281 281 TYR TYR A . n A 1 107 MET 107 282 282 MET MET A . n A 1 108 LYS 108 283 283 LYS LYS A . n A 1 109 LYS 109 284 284 LYS LYS A . n A 1 110 ALA 110 285 285 ALA ALA A . n A 1 111 GLU 111 286 286 GLU GLU A . n A 1 112 ILE 112 287 287 ILE ILE A . n A 1 113 GLU 113 288 288 GLU GLU A . n A 1 114 HIS 114 289 289 HIS HIS A . n A 1 115 HIS 115 290 290 HIS HIS A . n A 1 116 GLU 116 291 291 GLU GLU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 1 1 ZN ZN A . C 2 ZN 1 2 2 ZN ZN A . D 3 EDO 1 292 1 EDO EDO A . E 4 CL 1 293 1 CL CL A . F 4 CL 1 294 2 CL CL A . G 5 HOH 1 3 3 HOH HOH A . G 5 HOH 2 4 4 HOH HOH A . G 5 HOH 3 5 5 HOH HOH A . G 5 HOH 4 6 6 HOH HOH A . G 5 HOH 5 7 7 HOH HOH A . G 5 HOH 6 8 8 HOH HOH A . G 5 HOH 7 9 9 HOH HOH A . G 5 HOH 8 10 10 HOH HOH A . G 5 HOH 9 11 11 HOH HOH A . G 5 HOH 10 12 12 HOH HOH A . G 5 HOH 11 13 13 HOH HOH A . G 5 HOH 12 14 14 HOH HOH A . G 5 HOH 13 15 15 HOH HOH A . G 5 HOH 14 16 16 HOH HOH A . G 5 HOH 15 17 17 HOH HOH A . G 5 HOH 16 18 18 HOH HOH A . G 5 HOH 17 19 19 HOH HOH A . G 5 HOH 18 20 20 HOH HOH A . G 5 HOH 19 21 21 HOH HOH A . G 5 HOH 20 22 22 HOH HOH A . G 5 HOH 21 23 23 HOH HOH A . G 5 HOH 22 24 24 HOH HOH A . G 5 HOH 23 25 25 HOH HOH A . G 5 HOH 24 26 26 HOH HOH A . G 5 HOH 25 27 27 HOH HOH A . G 5 HOH 26 28 28 HOH HOH A . G 5 HOH 27 29 29 HOH HOH A . G 5 HOH 28 30 30 HOH HOH A . G 5 HOH 29 31 31 HOH HOH A . G 5 HOH 30 32 32 HOH HOH A . G 5 HOH 31 33 33 HOH HOH A . G 5 HOH 32 34 34 HOH HOH A . G 5 HOH 33 35 35 HOH HOH A . G 5 HOH 34 36 36 HOH HOH A . G 5 HOH 35 37 37 HOH HOH A . G 5 HOH 36 38 38 HOH HOH A . G 5 HOH 37 39 39 HOH HOH A . G 5 HOH 38 40 40 HOH HOH A . G 5 HOH 39 41 41 HOH HOH A . G 5 HOH 40 42 42 HOH HOH A . G 5 HOH 41 43 43 HOH HOH A . G 5 HOH 42 44 44 HOH HOH A . G 5 HOH 43 45 45 HOH HOH A . G 5 HOH 44 46 46 HOH HOH A . G 5 HOH 45 47 47 HOH HOH A . G 5 HOH 46 48 48 HOH HOH A . G 5 HOH 47 49 49 HOH HOH A . G 5 HOH 48 50 50 HOH HOH A . G 5 HOH 49 51 51 HOH HOH A . G 5 HOH 50 52 52 HOH HOH A . G 5 HOH 51 53 53 HOH HOH A . G 5 HOH 52 54 54 HOH HOH A . G 5 HOH 53 55 55 HOH HOH A . G 5 HOH 54 56 56 HOH HOH A . G 5 HOH 55 57 57 HOH HOH A . G 5 HOH 56 58 58 HOH HOH A . G 5 HOH 57 59 59 HOH HOH A . G 5 HOH 58 60 60 HOH HOH A . G 5 HOH 59 61 61 HOH HOH A . G 5 HOH 60 62 62 HOH HOH A . G 5 HOH 61 63 63 HOH HOH A . G 5 HOH 62 64 64 HOH HOH A . G 5 HOH 63 65 65 HOH HOH A . G 5 HOH 64 66 66 HOH HOH A . G 5 HOH 65 67 67 HOH HOH A . G 5 HOH 66 68 68 HOH HOH A . G 5 HOH 67 69 69 HOH HOH A . G 5 HOH 68 70 70 HOH HOH A . G 5 HOH 69 71 71 HOH HOH A . G 5 HOH 70 72 72 HOH HOH A . G 5 HOH 71 73 73 HOH HOH A . G 5 HOH 72 74 74 HOH HOH A . G 5 HOH 73 75 75 HOH HOH A . G 5 HOH 74 76 76 HOH HOH A . G 5 HOH 75 77 77 HOH HOH A . G 5 HOH 76 78 78 HOH HOH A . G 5 HOH 77 79 79 HOH HOH A . G 5 HOH 78 80 80 HOH HOH A . G 5 HOH 79 81 81 HOH HOH A . G 5 HOH 80 82 82 HOH HOH A . G 5 HOH 81 83 83 HOH HOH A . G 5 HOH 82 84 84 HOH HOH A . G 5 HOH 83 85 85 HOH HOH A . G 5 HOH 84 86 86 HOH HOH A . G 5 HOH 85 87 87 HOH HOH A . G 5 HOH 86 88 88 HOH HOH A . G 5 HOH 87 89 89 HOH HOH A . G 5 HOH 88 90 90 HOH HOH A . G 5 HOH 89 91 91 HOH HOH A . G 5 HOH 90 92 92 HOH HOH A . G 5 HOH 91 93 93 HOH HOH A . G 5 HOH 92 94 94 HOH HOH A . G 5 HOH 93 96 96 HOH HOH A . G 5 HOH 94 97 97 HOH HOH A . G 5 HOH 95 98 98 HOH HOH A . G 5 HOH 96 99 99 HOH HOH A . G 5 HOH 97 100 100 HOH HOH A . G 5 HOH 98 101 101 HOH HOH A . G 5 HOH 99 102 102 HOH HOH A . G 5 HOH 100 103 103 HOH HOH A . G 5 HOH 101 104 104 HOH HOH A . G 5 HOH 102 105 105 HOH HOH A . G 5 HOH 103 106 106 HOH HOH A . G 5 HOH 104 107 107 HOH HOH A . G 5 HOH 105 109 109 HOH HOH A . G 5 HOH 106 110 110 HOH HOH A . G 5 HOH 107 111 111 HOH HOH A . G 5 HOH 108 112 112 HOH HOH A . G 5 HOH 109 113 113 HOH HOH A . G 5 HOH 110 115 115 HOH HOH A . G 5 HOH 111 116 116 HOH HOH A . G 5 HOH 112 117 117 HOH HOH A . G 5 HOH 113 120 120 HOH HOH A . G 5 HOH 114 121 121 HOH HOH A . G 5 HOH 115 122 122 HOH HOH A . G 5 HOH 116 123 123 HOH HOH A . G 5 HOH 117 124 124 HOH HOH A . G 5 HOH 118 125 125 HOH HOH A . G 5 HOH 119 127 127 HOH HOH A . G 5 HOH 120 128 128 HOH HOH A . G 5 HOH 121 129 129 HOH HOH A . G 5 HOH 122 130 130 HOH HOH A . G 5 HOH 123 131 131 HOH HOH A . G 5 HOH 124 132 132 HOH HOH A . G 5 HOH 125 133 133 HOH HOH A . G 5 HOH 126 134 134 HOH HOH A . G 5 HOH 127 135 135 HOH HOH A . G 5 HOH 128 136 136 HOH HOH A . G 5 HOH 129 137 137 HOH HOH A . G 5 HOH 130 138 138 HOH HOH A . G 5 HOH 131 139 139 HOH HOH A . G 5 HOH 132 140 140 HOH HOH A . G 5 HOH 133 141 141 HOH HOH A . G 5 HOH 134 142 142 HOH HOH A . G 5 HOH 135 143 143 HOH HOH A . G 5 HOH 136 144 144 HOH HOH A . G 5 HOH 137 145 145 HOH HOH A . G 5 HOH 138 146 146 HOH HOH A . G 5 HOH 139 147 147 HOH HOH A . G 5 HOH 140 148 148 HOH HOH A . G 5 HOH 141 149 149 HOH HOH A . G 5 HOH 142 150 150 HOH HOH A . G 5 HOH 143 151 151 HOH HOH A . G 5 HOH 144 152 152 HOH HOH A . G 5 HOH 145 153 153 HOH HOH A . G 5 HOH 146 154 154 HOH HOH A . G 5 HOH 147 156 156 HOH HOH A . G 5 HOH 148 157 157 HOH HOH A . G 5 HOH 149 158 158 HOH HOH A . G 5 HOH 150 159 159 HOH HOH A . G 5 HOH 151 160 160 HOH HOH A . G 5 HOH 152 161 161 HOH HOH A . G 5 HOH 153 162 162 HOH HOH A . G 5 HOH 154 164 164 HOH HOH A . G 5 HOH 155 165 165 HOH HOH A . G 5 HOH 156 166 166 HOH HOH A . G 5 HOH 157 167 167 HOH HOH A . G 5 HOH 158 168 168 HOH HOH A . G 5 HOH 159 169 169 HOH HOH A . G 5 HOH 160 170 170 HOH HOH A . G 5 HOH 161 174 174 HOH HOH A . G 5 HOH 162 175 175 HOH HOH A . G 5 HOH 163 295 1 HOH HOH A . G 5 HOH 164 296 2 HOH HOH A . G 5 HOH 165 297 176 HOH HOH A . G 5 HOH 166 298 177 HOH HOH A . G 5 HOH 167 299 179 HOH HOH A . G 5 HOH 168 300 180 HOH HOH A . G 5 HOH 169 301 181 HOH HOH A . G 5 HOH 170 302 182 HOH HOH A . G 5 HOH 171 303 183 HOH HOH A . G 5 HOH 172 304 184 HOH HOH A . G 5 HOH 173 305 187 HOH HOH A . G 5 HOH 174 306 188 HOH HOH A . G 5 HOH 175 307 189 HOH HOH A . G 5 HOH 176 308 190 HOH HOH A . G 5 HOH 177 309 191 HOH HOH A . G 5 HOH 178 310 193 HOH HOH A . G 5 HOH 179 311 195 HOH HOH A . G 5 HOH 180 312 196 HOH HOH A . G 5 HOH 181 313 197 HOH HOH A . G 5 HOH 182 314 199 HOH HOH A . G 5 HOH 183 315 200 HOH HOH A . G 5 HOH 184 316 201 HOH HOH A . G 5 HOH 185 317 202 HOH HOH A . G 5 HOH 186 318 203 HOH HOH A . G 5 HOH 187 319 204 HOH HOH A . G 5 HOH 188 320 205 HOH HOH A . G 5 HOH 189 321 206 HOH HOH A . G 5 HOH 190 322 207 HOH HOH A . G 5 HOH 191 323 208 HOH HOH A . G 5 HOH 192 324 209 HOH HOH A . G 5 HOH 193 325 210 HOH HOH A . G 5 HOH 194 326 212 HOH HOH A . G 5 HOH 195 327 214 HOH HOH A . G 5 HOH 196 328 218 HOH HOH A . G 5 HOH 197 329 220 HOH HOH A . G 5 HOH 198 330 226 HOH HOH A . G 5 HOH 199 331 228 HOH HOH A . G 5 HOH 200 332 236 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G 2 1,2 A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2810 ? 2 MORE -159 ? 2 'SSA (A^2)' 13210 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 81.1846784984 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 33.2902162956 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 9 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id ND1 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id HIS _pdbx_struct_conn_angle.ptnr1_label_seq_id 115 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr1_auth_seq_id 290 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id ZN _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id C _pdbx_struct_conn_angle.ptnr2_label_comp_id ZN _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id ZN _pdbx_struct_conn_angle.ptnr2_auth_seq_id 2 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OXT _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id GLU _pdbx_struct_conn_angle.ptnr3_label_seq_id 116 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr3_auth_seq_id 291 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 118.0 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-04-11 4 'Structure model' 1 3 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 4 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 5 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 9 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 15 4 'Structure model' '_struct_ref_seq_dif.details' 16 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 33.2029 6.6908 5.2207 0.1718 0.0442 0.1078 -0.0500 0.0128 -0.0270 0.6413 1.3461 1.2032 0.5067 0.2680 0.5565 0.0366 -0.1002 0.0263 0.0901 -0.1607 -0.1071 0.0476 0.3239 -0.1817 'X-RAY DIFFRACTION' 2 ? refined 17.6146 7.0276 11.3487 0.1385 0.1975 0.1079 -0.1122 0.0335 -0.0542 0.3690 0.2106 -0.3451 0.1752 0.0043 -0.4106 0.1596 -0.2125 0.0509 -0.0628 0.0547 0.1335 0.1740 -0.0405 0.0489 'X-RAY DIFFRACTION' 3 ? refined 32.7879 7.2494 15.1039 0.1634 0.0462 0.0870 -0.0587 -0.0030 0.0155 1.2205 0.5467 1.7809 0.6850 0.8162 0.6173 0.1623 -0.1406 -0.0276 -0.1827 -0.1712 -0.0703 0.1390 0.4299 -0.2232 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 176 '(CHAIN A AND RESID 176:210)' 1 1 A A 210 ? ? ? ? ? 'X-RAY DIFFRACTION' 211 '(CHAIN A AND RESID 211:241)' 2 2 A A 241 ? ? ? ? ? 'X-RAY DIFFRACTION' 242 '(CHAIN A AND RESID 242:291)' 3 3 A A 291 ? ? ? ? ? # _pdbx_phasing_MR.entry_id 3HMF _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 56.630 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 27.180 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 27.180 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.9 2008/10/21 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER 2.1.4 'Thu Nov 13 10:53:32 2008' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 CrystalClear . ? ? ? ? 'data collection' ? ? ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 176 ? OG ? A SER 1 OG 2 1 Y 1 A ARG 202 ? CG ? A ARG 27 CG 3 1 Y 1 A ARG 202 ? CD ? A ARG 27 CD 4 1 Y 1 A ARG 202 ? NE ? A ARG 27 NE 5 1 Y 1 A ARG 202 ? CZ ? A ARG 27 CZ 6 1 Y 1 A ARG 202 ? NH1 ? A ARG 27 NH1 7 1 Y 1 A ARG 202 ? NH2 ? A ARG 27 NH2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 EDO C1 C N N 75 EDO O1 O N N 76 EDO C2 C N N 77 EDO O2 O N N 78 EDO H11 H N N 79 EDO H12 H N N 80 EDO HO1 H N N 81 EDO H21 H N N 82 EDO H22 H N N 83 EDO HO2 H N N 84 GLN N N N N 85 GLN CA C N S 86 GLN C C N N 87 GLN O O N N 88 GLN CB C N N 89 GLN CG C N N 90 GLN CD C N N 91 GLN OE1 O N N 92 GLN NE2 N N N 93 GLN OXT O N N 94 GLN H H N N 95 GLN H2 H N N 96 GLN HA H N N 97 GLN HB2 H N N 98 GLN HB3 H N N 99 GLN HG2 H N N 100 GLN HG3 H N N 101 GLN HE21 H N N 102 GLN HE22 H N N 103 GLN HXT H N N 104 GLU N N N N 105 GLU CA C N S 106 GLU C C N N 107 GLU O O N N 108 GLU CB C N N 109 GLU CG C N N 110 GLU CD C N N 111 GLU OE1 O N N 112 GLU OE2 O N N 113 GLU OXT O N N 114 GLU H H N N 115 GLU H2 H N N 116 GLU HA H N N 117 GLU HB2 H N N 118 GLU HB3 H N N 119 GLU HG2 H N N 120 GLU HG3 H N N 121 GLU HE2 H N N 122 GLU HXT H N N 123 GLY N N N N 124 GLY CA C N N 125 GLY C C N N 126 GLY O O N N 127 GLY OXT O N N 128 GLY H H N N 129 GLY H2 H N N 130 GLY HA2 H N N 131 GLY HA3 H N N 132 GLY HXT H N N 133 HIS N N N N 134 HIS CA C N S 135 HIS C C N N 136 HIS O O N N 137 HIS CB C N N 138 HIS CG C Y N 139 HIS ND1 N Y N 140 HIS CD2 C Y N 141 HIS CE1 C Y N 142 HIS NE2 N Y N 143 HIS OXT O N N 144 HIS H H N N 145 HIS H2 H N N 146 HIS HA H N N 147 HIS HB2 H N N 148 HIS HB3 H N N 149 HIS HD1 H N N 150 HIS HD2 H N N 151 HIS HE1 H N N 152 HIS HE2 H N N 153 HIS HXT H N N 154 HOH O O N N 155 HOH H1 H N N 156 HOH H2 H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TYR N N N N 318 TYR CA C N S 319 TYR C C N N 320 TYR O O N N 321 TYR CB C N N 322 TYR CG C Y N 323 TYR CD1 C Y N 324 TYR CD2 C Y N 325 TYR CE1 C Y N 326 TYR CE2 C Y N 327 TYR CZ C Y N 328 TYR OH O N N 329 TYR OXT O N N 330 TYR H H N N 331 TYR H2 H N N 332 TYR HA H N N 333 TYR HB2 H N N 334 TYR HB3 H N N 335 TYR HD1 H N N 336 TYR HD2 H N N 337 TYR HE1 H N N 338 TYR HE2 H N N 339 TYR HH H N N 340 TYR HXT H N N 341 VAL N N N N 342 VAL CA C N S 343 VAL C C N N 344 VAL O O N N 345 VAL CB C N N 346 VAL CG1 C N N 347 VAL CG2 C N N 348 VAL OXT O N N 349 VAL H H N N 350 VAL H2 H N N 351 VAL HA H N N 352 VAL HB H N N 353 VAL HG11 H N N 354 VAL HG12 H N N 355 VAL HG13 H N N 356 VAL HG21 H N N 357 VAL HG22 H N N 358 VAL HG23 H N N 359 VAL HXT H N N 360 ZN ZN ZN N N 361 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 EDO C1 O1 sing N N 70 EDO C1 C2 sing N N 71 EDO C1 H11 sing N N 72 EDO C1 H12 sing N N 73 EDO O1 HO1 sing N N 74 EDO C2 O2 sing N N 75 EDO C2 H21 sing N N 76 EDO C2 H22 sing N N 77 EDO O2 HO2 sing N N 78 GLN N CA sing N N 79 GLN N H sing N N 80 GLN N H2 sing N N 81 GLN CA C sing N N 82 GLN CA CB sing N N 83 GLN CA HA sing N N 84 GLN C O doub N N 85 GLN C OXT sing N N 86 GLN CB CG sing N N 87 GLN CB HB2 sing N N 88 GLN CB HB3 sing N N 89 GLN CG CD sing N N 90 GLN CG HG2 sing N N 91 GLN CG HG3 sing N N 92 GLN CD OE1 doub N N 93 GLN CD NE2 sing N N 94 GLN NE2 HE21 sing N N 95 GLN NE2 HE22 sing N N 96 GLN OXT HXT sing N N 97 GLU N CA sing N N 98 GLU N H sing N N 99 GLU N H2 sing N N 100 GLU CA C sing N N 101 GLU CA CB sing N N 102 GLU CA HA sing N N 103 GLU C O doub N N 104 GLU C OXT sing N N 105 GLU CB CG sing N N 106 GLU CB HB2 sing N N 107 GLU CB HB3 sing N N 108 GLU CG CD sing N N 109 GLU CG HG2 sing N N 110 GLU CG HG3 sing N N 111 GLU CD OE1 doub N N 112 GLU CD OE2 sing N N 113 GLU OE2 HE2 sing N N 114 GLU OXT HXT sing N N 115 GLY N CA sing N N 116 GLY N H sing N N 117 GLY N H2 sing N N 118 GLY CA C sing N N 119 GLY CA HA2 sing N N 120 GLY CA HA3 sing N N 121 GLY C O doub N N 122 GLY C OXT sing N N 123 GLY OXT HXT sing N N 124 HIS N CA sing N N 125 HIS N H sing N N 126 HIS N H2 sing N N 127 HIS CA C sing N N 128 HIS CA CB sing N N 129 HIS CA HA sing N N 130 HIS C O doub N N 131 HIS C OXT sing N N 132 HIS CB CG sing N N 133 HIS CB HB2 sing N N 134 HIS CB HB3 sing N N 135 HIS CG ND1 sing Y N 136 HIS CG CD2 doub Y N 137 HIS ND1 CE1 doub Y N 138 HIS ND1 HD1 sing N N 139 HIS CD2 NE2 sing Y N 140 HIS CD2 HD2 sing N N 141 HIS CE1 NE2 sing Y N 142 HIS CE1 HE1 sing N N 143 HIS NE2 HE2 sing N N 144 HIS OXT HXT sing N N 145 HOH O H1 sing N N 146 HOH O H2 sing N N 147 ILE N CA sing N N 148 ILE N H sing N N 149 ILE N H2 sing N N 150 ILE CA C sing N N 151 ILE CA CB sing N N 152 ILE CA HA sing N N 153 ILE C O doub N N 154 ILE C OXT sing N N 155 ILE CB CG1 sing N N 156 ILE CB CG2 sing N N 157 ILE CB HB sing N N 158 ILE CG1 CD1 sing N N 159 ILE CG1 HG12 sing N N 160 ILE CG1 HG13 sing N N 161 ILE CG2 HG21 sing N N 162 ILE CG2 HG22 sing N N 163 ILE CG2 HG23 sing N N 164 ILE CD1 HD11 sing N N 165 ILE CD1 HD12 sing N N 166 ILE CD1 HD13 sing N N 167 ILE OXT HXT sing N N 168 LEU N CA sing N N 169 LEU N H sing N N 170 LEU N H2 sing N N 171 LEU CA C sing N N 172 LEU CA CB sing N N 173 LEU CA HA sing N N 174 LEU C O doub N N 175 LEU C OXT sing N N 176 LEU CB CG sing N N 177 LEU CB HB2 sing N N 178 LEU CB HB3 sing N N 179 LEU CG CD1 sing N N 180 LEU CG CD2 sing N N 181 LEU CG HG sing N N 182 LEU CD1 HD11 sing N N 183 LEU CD1 HD12 sing N N 184 LEU CD1 HD13 sing N N 185 LEU CD2 HD21 sing N N 186 LEU CD2 HD22 sing N N 187 LEU CD2 HD23 sing N N 188 LEU OXT HXT sing N N 189 LYS N CA sing N N 190 LYS N H sing N N 191 LYS N H2 sing N N 192 LYS CA C sing N N 193 LYS CA CB sing N N 194 LYS CA HA sing N N 195 LYS C O doub N N 196 LYS C OXT sing N N 197 LYS CB CG sing N N 198 LYS CB HB2 sing N N 199 LYS CB HB3 sing N N 200 LYS CG CD sing N N 201 LYS CG HG2 sing N N 202 LYS CG HG3 sing N N 203 LYS CD CE sing N N 204 LYS CD HD2 sing N N 205 LYS CD HD3 sing N N 206 LYS CE NZ sing N N 207 LYS CE HE2 sing N N 208 LYS CE HE3 sing N N 209 LYS NZ HZ1 sing N N 210 LYS NZ HZ2 sing N N 211 LYS NZ HZ3 sing N N 212 LYS OXT HXT sing N N 213 MET N CA sing N N 214 MET N H sing N N 215 MET N H2 sing N N 216 MET CA C sing N N 217 MET CA CB sing N N 218 MET CA HA sing N N 219 MET C O doub N N 220 MET C OXT sing N N 221 MET CB CG sing N N 222 MET CB HB2 sing N N 223 MET CB HB3 sing N N 224 MET CG SD sing N N 225 MET CG HG2 sing N N 226 MET CG HG3 sing N N 227 MET SD CE sing N N 228 MET CE HE1 sing N N 229 MET CE HE2 sing N N 230 MET CE HE3 sing N N 231 MET OXT HXT sing N N 232 PHE N CA sing N N 233 PHE N H sing N N 234 PHE N H2 sing N N 235 PHE CA C sing N N 236 PHE CA CB sing N N 237 PHE CA HA sing N N 238 PHE C O doub N N 239 PHE C OXT sing N N 240 PHE CB CG sing N N 241 PHE CB HB2 sing N N 242 PHE CB HB3 sing N N 243 PHE CG CD1 doub Y N 244 PHE CG CD2 sing Y N 245 PHE CD1 CE1 sing Y N 246 PHE CD1 HD1 sing N N 247 PHE CD2 CE2 doub Y N 248 PHE CD2 HD2 sing N N 249 PHE CE1 CZ doub Y N 250 PHE CE1 HE1 sing N N 251 PHE CE2 CZ sing Y N 252 PHE CE2 HE2 sing N N 253 PHE CZ HZ sing N N 254 PHE OXT HXT sing N N 255 PRO N CA sing N N 256 PRO N CD sing N N 257 PRO N H sing N N 258 PRO CA C sing N N 259 PRO CA CB sing N N 260 PRO CA HA sing N N 261 PRO C O doub N N 262 PRO C OXT sing N N 263 PRO CB CG sing N N 264 PRO CB HB2 sing N N 265 PRO CB HB3 sing N N 266 PRO CG CD sing N N 267 PRO CG HG2 sing N N 268 PRO CG HG3 sing N N 269 PRO CD HD2 sing N N 270 PRO CD HD3 sing N N 271 PRO OXT HXT sing N N 272 SER N CA sing N N 273 SER N H sing N N 274 SER N H2 sing N N 275 SER CA C sing N N 276 SER CA CB sing N N 277 SER CA HA sing N N 278 SER C O doub N N 279 SER C OXT sing N N 280 SER CB OG sing N N 281 SER CB HB2 sing N N 282 SER CB HB3 sing N N 283 SER OG HG sing N N 284 SER OXT HXT sing N N 285 THR N CA sing N N 286 THR N H sing N N 287 THR N H2 sing N N 288 THR CA C sing N N 289 THR CA CB sing N N 290 THR CA HA sing N N 291 THR C O doub N N 292 THR C OXT sing N N 293 THR CB OG1 sing N N 294 THR CB CG2 sing N N 295 THR CB HB sing N N 296 THR OG1 HG1 sing N N 297 THR CG2 HG21 sing N N 298 THR CG2 HG22 sing N N 299 THR CG2 HG23 sing N N 300 THR OXT HXT sing N N 301 TYR N CA sing N N 302 TYR N H sing N N 303 TYR N H2 sing N N 304 TYR CA C sing N N 305 TYR CA CB sing N N 306 TYR CA HA sing N N 307 TYR C O doub N N 308 TYR C OXT sing N N 309 TYR CB CG sing N N 310 TYR CB HB2 sing N N 311 TYR CB HB3 sing N N 312 TYR CG CD1 doub Y N 313 TYR CG CD2 sing Y N 314 TYR CD1 CE1 sing Y N 315 TYR CD1 HD1 sing N N 316 TYR CD2 CE2 doub Y N 317 TYR CD2 HD2 sing N N 318 TYR CE1 CZ doub Y N 319 TYR CE1 HE1 sing N N 320 TYR CE2 CZ sing Y N 321 TYR CE2 HE2 sing N N 322 TYR CZ OH sing N N 323 TYR OH HH sing N N 324 TYR OXT HXT sing N N 325 VAL N CA sing N N 326 VAL N H sing N N 327 VAL N H2 sing N N 328 VAL CA C sing N N 329 VAL CA CB sing N N 330 VAL CA HA sing N N 331 VAL C O doub N N 332 VAL C OXT sing N N 333 VAL CB CG1 sing N N 334 VAL CB CG2 sing N N 335 VAL CB HB sing N N 336 VAL CG1 HG11 sing N N 337 VAL CG1 HG12 sing N N 338 VAL CG1 HG13 sing N N 339 VAL CG2 HG21 sing N N 340 VAL CG2 HG22 sing N N 341 VAL CG2 HG23 sing N N 342 VAL OXT HXT sing N N 343 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 1,2-ETHANEDIOL EDO 4 'CHLORIDE ION' CL 5 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 2NXB '2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 2 ? 'experimental model' PDB 2OO1 '2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 3 ? 'experimental model' PDB 2OSS '2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 4 ? 'experimental model' PDB 2OUO '2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 5 ? 'experimental model' PDB 2RFJ '2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 6 ? 'experimental model' PDB 3DAI '2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 7 ? 'experimental model' PDB 3D7C '2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' 8 ? 'experimental model' PDB 3DWY '2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, 3DWY' #