HEADER TRANSFERASE 29-MAY-09 3HMO TITLE CRYSTAL STRUCTURE OF HUMAN MPS1 CATALYTIC DOMAIN IN COMPLEX WITH THE TITLE 2 INHIBITOR STAUROSPORINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 510-809; COMPND 5 SYNONYM: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE, PYT; COMPND 6 EC: 2.7.12.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MPS1L1, TTK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)LYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS MPS1, TTK, STU, STAUROSPORINE, KINASE, ATP-BINDING, NUCLEOTIDE- KEYWDS 2 BINDING, PHOSPHOPROTEIN, SERINE/THREONINE-PROTEIN KINASE, TYROSINE- KEYWDS 3 PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.L.H.CHU,L.M.G.CHAVAS,D.H.WILLIAMS,L.TABERNERO,P.A.EYERS REVDAT 4 06-SEP-23 3HMO 1 REMARK SEQADV REVDAT 3 13-JUL-11 3HMO 1 VERSN REVDAT 2 07-APR-10 3HMO 1 JRNL REVDAT 1 02-FEB-10 3HMO 0 JRNL AUTH M.L.CHU,Z.LANG,L.M.CHAVAS,J.NERES,O.S.FEDOROVA,L.TABERNERO, JRNL AUTH 2 M.CHERRY,D.H.WILLIAMS,K.T.DOUGLAS,P.A.EYERS JRNL TITL BIOPHYSICAL AND X-RAY CRYSTALLOGRAPHIC ANALYSIS OF MPS1 JRNL TITL 2 KINASE INHIBITOR COMPLEXES. JRNL REF BIOCHEMISTRY V. 49 1689 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20099905 JRNL DOI 10.1021/BI901970C REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 15400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 817 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 980 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2096 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 47.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.69000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : 1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.314 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.246 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.168 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2222 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1525 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2997 ; 1.041 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3745 ; 0.864 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 5.294 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;40.326 ;25.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 403 ;12.865 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;22.294 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2336 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 397 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 426 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1584 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1056 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1090 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 76 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.179 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.216 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 26 ; 0.218 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.106 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1701 ; 0.639 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 512 ; 0.063 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2087 ; 0.695 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1291 ; 0.691 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 910 ; 1.082 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 514 A 604 REMARK 3 ORIGIN FOR THE GROUP (A): -44.5685 -22.7440 -13.3303 REMARK 3 T TENSOR REMARK 3 T11: -0.0504 T22: -0.0642 REMARK 3 T33: -0.0496 T12: -0.0807 REMARK 3 T13: -0.0114 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.1503 L22: 1.5715 REMARK 3 L33: 2.7449 L12: -0.3113 REMARK 3 L13: 1.2765 L23: -0.7580 REMARK 3 S TENSOR REMARK 3 S11: 0.0841 S12: -0.0370 S13: 0.2688 REMARK 3 S21: 0.2326 S22: -0.1062 S23: -0.1064 REMARK 3 S31: -0.1826 S32: 0.0424 S33: 0.0222 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 605 A 671 REMARK 3 RESIDUE RANGE : A 684 A 698 REMARK 3 RESIDUE RANGE : A 711 A 794 REMARK 3 ORIGIN FOR THE GROUP (A): -24.0895 -11.0663 -25.9087 REMARK 3 T TENSOR REMARK 3 T11: -0.1087 T22: -0.0608 REMARK 3 T33: -0.0462 T12: 0.0130 REMARK 3 T13: 0.0607 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.2766 L22: 1.7317 REMARK 3 L33: 0.1480 L12: -0.5635 REMARK 3 L13: -0.0367 L23: 0.2079 REMARK 3 S TENSOR REMARK 3 S11: -0.1143 S12: -0.1109 S13: 0.1571 REMARK 3 S21: 0.0563 S22: 0.1267 S23: -0.0202 REMARK 3 S31: -0.0522 S32: 0.0116 S33: -0.0124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HMO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 59.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : 0.55000 REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2ZMD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 300, 0.1 M HEPES, 2.5 % REMARK 280 ISOPROPANOL, 5 % GLYCEROL, 50 MM AMMONIUM SULPHATE, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.47000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.94000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.71000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.47000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.94000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.71000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.47000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.94000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.71000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.47000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.94000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.71000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -70.94000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 SER A 474 REMARK 465 SER A 475 REMARK 465 GLY A 476 REMARK 465 LEU A 477 REMARK 465 VAL A 478 REMARK 465 PRO A 479 REMARK 465 ARG A 480 REMARK 465 GLY A 481 REMARK 465 SER A 482 REMARK 465 GLY A 483 REMARK 465 MET A 484 REMARK 465 LYS A 485 REMARK 465 GLU A 486 REMARK 465 THR A 487 REMARK 465 ALA A 488 REMARK 465 ALA A 489 REMARK 465 ALA A 490 REMARK 465 LYS A 491 REMARK 465 PHE A 492 REMARK 465 GLU A 493 REMARK 465 ARG A 494 REMARK 465 GLN A 495 REMARK 465 HIS A 496 REMARK 465 MET A 497 REMARK 465 ASP A 498 REMARK 465 SER A 499 REMARK 465 PRO A 500 REMARK 465 ASP A 501 REMARK 465 LEU A 502 REMARK 465 GLY A 503 REMARK 465 THR A 504 REMARK 465 ASP A 505 REMARK 465 ASP A 506 REMARK 465 ASP A 507 REMARK 465 ASP A 508 REMARK 465 LYS A 509 REMARK 465 ALA A 510 REMARK 465 SER A 511 REMARK 465 SER A 512 REMARK 465 SER A 513 REMARK 465 GLN A 672 REMARK 465 PRO A 673 REMARK 465 ASP A 674 REMARK 465 THR A 675 REMARK 465 THR A 676 REMARK 465 SER A 677 REMARK 465 VAL A 678 REMARK 465 VAL A 679 REMARK 465 LYS A 680 REMARK 465 ASP A 681 REMARK 465 SER A 682 REMARK 465 GLN A 683 REMARK 465 SER A 699 REMARK 465 SER A 700 REMARK 465 SER A 701 REMARK 465 ARG A 702 REMARK 465 GLU A 703 REMARK 465 ASN A 704 REMARK 465 GLY A 705 REMARK 465 LYS A 706 REMARK 465 SER A 707 REMARK 465 LYS A 708 REMARK 465 SER A 709 REMARK 465 LYS A 710 REMARK 465 THR A 795 REMARK 465 HIS A 796 REMARK 465 PRO A 797 REMARK 465 VAL A 798 REMARK 465 ASN A 799 REMARK 465 GLN A 800 REMARK 465 MET A 801 REMARK 465 ALA A 802 REMARK 465 LYS A 803 REMARK 465 GLY A 804 REMARK 465 THR A 805 REMARK 465 THR A 806 REMARK 465 GLU A 807 REMARK 465 GLU A 808 REMARK 465 MET A 809 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 617 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 617 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 647 39.01 -147.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 7PE A 1153 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 7PE A 1153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STU A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 811 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 812 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 813 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZMC RELATED DB: PDB REMARK 900 THE SAME PROTEIN IS THE WILD-TYPE APO-FORM. REMARK 900 RELATED ID: 2ZMD RELATED DB: PDB REMARK 900 THE SAME PROTEIN IS THE T686A MUTANT IN COMPLEX WITH INHIBITOR REMARK 900 SP600125. REMARK 900 RELATED ID: 3HMN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN MPS1 CATALYTIC DOMAIN IN COMPLEX WITH ATP REMARK 900 RELATED ID: 3HMP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN MPS1 CATALYTIC DOMAIN IN COMPLEX WITH A REMARK 900 QUINAZOLIN LIGAND COMPOUND 4 DBREF 3HMO A 510 809 UNP P33981 TTK_HUMAN 510 809 SEQADV 3HMO HIS A 468 UNP P33981 EXPRESSION TAG SEQADV 3HMO HIS A 469 UNP P33981 EXPRESSION TAG SEQADV 3HMO HIS A 470 UNP P33981 EXPRESSION TAG SEQADV 3HMO HIS A 471 UNP P33981 EXPRESSION TAG SEQADV 3HMO HIS A 472 UNP P33981 EXPRESSION TAG SEQADV 3HMO HIS A 473 UNP P33981 EXPRESSION TAG SEQADV 3HMO SER A 474 UNP P33981 EXPRESSION TAG SEQADV 3HMO SER A 475 UNP P33981 EXPRESSION TAG SEQADV 3HMO GLY A 476 UNP P33981 EXPRESSION TAG SEQADV 3HMO LEU A 477 UNP P33981 EXPRESSION TAG SEQADV 3HMO VAL A 478 UNP P33981 EXPRESSION TAG SEQADV 3HMO PRO A 479 UNP P33981 EXPRESSION TAG SEQADV 3HMO ARG A 480 UNP P33981 EXPRESSION TAG SEQADV 3HMO GLY A 481 UNP P33981 EXPRESSION TAG SEQADV 3HMO SER A 482 UNP P33981 EXPRESSION TAG SEQADV 3HMO GLY A 483 UNP P33981 EXPRESSION TAG SEQADV 3HMO MET A 484 UNP P33981 EXPRESSION TAG SEQADV 3HMO LYS A 485 UNP P33981 EXPRESSION TAG SEQADV 3HMO GLU A 486 UNP P33981 EXPRESSION TAG SEQADV 3HMO THR A 487 UNP P33981 EXPRESSION TAG SEQADV 3HMO ALA A 488 UNP P33981 EXPRESSION TAG SEQADV 3HMO ALA A 489 UNP P33981 EXPRESSION TAG SEQADV 3HMO ALA A 490 UNP P33981 EXPRESSION TAG SEQADV 3HMO LYS A 491 UNP P33981 EXPRESSION TAG SEQADV 3HMO PHE A 492 UNP P33981 EXPRESSION TAG SEQADV 3HMO GLU A 493 UNP P33981 EXPRESSION TAG SEQADV 3HMO ARG A 494 UNP P33981 EXPRESSION TAG SEQADV 3HMO GLN A 495 UNP P33981 EXPRESSION TAG SEQADV 3HMO HIS A 496 UNP P33981 EXPRESSION TAG SEQADV 3HMO MET A 497 UNP P33981 EXPRESSION TAG SEQADV 3HMO ASP A 498 UNP P33981 EXPRESSION TAG SEQADV 3HMO SER A 499 UNP P33981 EXPRESSION TAG SEQADV 3HMO PRO A 500 UNP P33981 EXPRESSION TAG SEQADV 3HMO ASP A 501 UNP P33981 EXPRESSION TAG SEQADV 3HMO LEU A 502 UNP P33981 EXPRESSION TAG SEQADV 3HMO GLY A 503 UNP P33981 EXPRESSION TAG SEQADV 3HMO THR A 504 UNP P33981 EXPRESSION TAG SEQADV 3HMO ASP A 505 UNP P33981 EXPRESSION TAG SEQADV 3HMO ASP A 506 UNP P33981 EXPRESSION TAG SEQADV 3HMO ASP A 507 UNP P33981 EXPRESSION TAG SEQADV 3HMO ASP A 508 UNP P33981 EXPRESSION TAG SEQADV 3HMO LYS A 509 UNP P33981 EXPRESSION TAG SEQRES 1 A 342 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 342 GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE GLU SEQRES 3 A 342 ARG GLN HIS MET ASP SER PRO ASP LEU GLY THR ASP ASP SEQRES 4 A 342 ASP ASP LYS ALA SER SER SER ALA ASN GLU CYS ILE SER SEQRES 5 A 342 VAL LYS GLY ARG ILE TYR SER ILE LEU LYS GLN ILE GLY SEQRES 6 A 342 SER GLY GLY SER SER LYS VAL PHE GLN VAL LEU ASN GLU SEQRES 7 A 342 LYS LYS GLN ILE TYR ALA ILE LYS TYR VAL ASN LEU GLU SEQRES 8 A 342 GLU ALA ASP ASN GLN THR LEU ASP SER TYR ARG ASN GLU SEQRES 9 A 342 ILE ALA TYR LEU ASN LYS LEU GLN GLN HIS SER ASP LYS SEQRES 10 A 342 ILE ILE ARG LEU TYR ASP TYR GLU ILE THR ASP GLN TYR SEQRES 11 A 342 ILE TYR MET VAL MET GLU CYS GLY ASN ILE ASP LEU ASN SEQRES 12 A 342 SER TRP LEU LYS LYS LYS LYS SER ILE ASP PRO TRP GLU SEQRES 13 A 342 ARG LYS SER TYR TRP LYS ASN MET LEU GLU ALA VAL HIS SEQRES 14 A 342 THR ILE HIS GLN HIS GLY ILE VAL HIS SER ASP LEU LYS SEQRES 15 A 342 PRO ALA ASN PHE LEU ILE VAL ASP GLY MET LEU LYS LEU SEQRES 16 A 342 ILE ASP PHE GLY ILE ALA ASN GLN MET GLN PRO ASP THR SEQRES 17 A 342 THR SER VAL VAL LYS ASP SER GLN VAL GLY THR VAL ASN SEQRES 18 A 342 TYR MET PRO PRO GLU ALA ILE LYS ASP MET SER SER SER SEQRES 19 A 342 ARG GLU ASN GLY LYS SER LYS SER LYS ILE SER PRO LYS SEQRES 20 A 342 SER ASP VAL TRP SER LEU GLY CYS ILE LEU TYR TYR MET SEQRES 21 A 342 THR TYR GLY LYS THR PRO PHE GLN GLN ILE ILE ASN GLN SEQRES 22 A 342 ILE SER LYS LEU HIS ALA ILE ILE ASP PRO ASN HIS GLU SEQRES 23 A 342 ILE GLU PHE PRO ASP ILE PRO GLU LYS ASP LEU GLN ASP SEQRES 24 A 342 VAL LEU LYS CYS CYS LEU LYS ARG ASP PRO LYS GLN ARG SEQRES 25 A 342 ILE SER ILE PRO GLU LEU LEU ALA HIS PRO TYR VAL GLN SEQRES 26 A 342 ILE GLN THR HIS PRO VAL ASN GLN MET ALA LYS GLY THR SEQRES 27 A 342 THR GLU GLU MET HET 7PE A1153 16 HET STU A 1 35 HET IPA A 810 4 HET IPA A 2 4 HET IPA A 3 4 HET GOL A 811 6 HET GOL A 812 6 HET GOL A 813 6 HET GOL A 4 6 HETNAM 7PE 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY) HETNAM 2 7PE ETHOXY)ETHANOL HETNAM STU STAUROSPORINE HETNAM IPA ISOPROPYL ALCOHOL HETNAM GOL GLYCEROL HETSYN 7PE POLYETHYLENE GLYCOL FRAGMENT HETSYN IPA 2-PROPANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 7PE C14 H30 O7 FORMUL 3 STU C28 H26 N4 O3 FORMUL 4 IPA 3(C3 H8 O) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 11 HOH *80(H2 O) HELIX 1 1 ASP A 561 GLN A 579 1 19 HELIX 2 2 LEU A 609 LYS A 615 1 7 HELIX 3 3 ASP A 620 HIS A 641 1 22 HELIX 4 4 LYS A 649 ALA A 651 5 3 HELIX 5 5 PRO A 691 ASP A 697 1 7 HELIX 6 6 SER A 712 GLY A 730 1 19 HELIX 7 7 ASN A 739 ASP A 749 1 11 HELIX 8 8 GLU A 761 LEU A 772 1 12 HELIX 9 9 SER A 781 ALA A 787 1 7 HELIX 10 10 HIS A 788 ILE A 793 1 6 SHEET 1 A 6 CYS A 517 VAL A 520 0 SHEET 2 A 6 ARG A 523 SER A 533 -1 O TYR A 525 N ILE A 518 SHEET 3 A 6 SER A 537 LEU A 543 -1 O GLN A 541 N LYS A 529 SHEET 4 A 6 ILE A 549 ASN A 556 -1 O TYR A 554 N LYS A 538 SHEET 5 A 6 TYR A 597 MET A 602 -1 O MET A 602 N ALA A 551 SHEET 6 A 6 LEU A 588 ILE A 593 -1 N GLU A 592 O TYR A 599 SHEET 1 B 3 ILE A 607 ASP A 608 0 SHEET 2 B 3 PHE A 653 VAL A 656 -1 O ILE A 655 N ILE A 607 SHEET 3 B 3 MET A 659 LEU A 662 -1 O MET A 659 N VAL A 656 SITE 1 AC1 6 STU A 1 HOH A 88 SER A 537 LYS A 553 SITE 2 AC1 6 GLU A 571 ILE A 663 SITE 1 AC2 12 ILE A 531 GLY A 532 ALA A 551 LYS A 553 SITE 2 AC2 12 GLU A 603 CYS A 604 GLY A 605 ASN A 606 SITE 3 AC2 12 ASP A 608 LEU A 654 ILE A 663 7PE A1153 SITE 1 AC3 1 HOH A 112 SITE 1 AC4 6 LEU A 557 ARG A 569 ILE A 593 THR A 594 SITE 2 AC4 6 ASP A 595 PRO A 783 SITE 1 AC5 3 PRO A 760 LYS A 762 ASP A 763 SITE 1 AC6 7 HOH A 106 LYS A 521 CYS A 770 LYS A 773 SITE 2 AC6 7 GLN A 778 ILE A 780 GLU A 784 SITE 1 AC7 4 PRO A 750 LYS A 773 ARG A 774 ASP A 775 SITE 1 AC8 2 ASP A 766 LYS A 773 SITE 1 AC9 6 HOH A 125 HIS A 639 PRO A 713 SER A 781 SITE 2 AC9 6 ILE A 782 PRO A 783 CRYST1 70.940 103.880 111.420 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014096 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009626 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008975 0.00000