data_3HMZ # _entry.id 3HMZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HMZ pdb_00003hmz 10.2210/pdb3hmz/pdb RCSB RCSB053332 ? ? WWPDB D_1000053332 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 375054 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3HMZ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-05-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of FMN-binding domain of flavin reductases-like enzyme (YP_001049024.1) from Shewanella baltica OS155 at 1.50 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3HMZ _cell.length_a 74.627 _cell.length_b 74.627 _cell.length_c 74.107 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HMZ _symmetry.Int_Tables_number 152 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Flavin reductase domain protein, FMN-binding' 22173.432 1 ? ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 4 non-polymer syn IMIDAZOLE 69.085 1 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 6 ? ? ? ? 6 water nat water 18.015 219 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)HHQRKTHVDNNIAAVELAKAYRLLNHGPTVLVSARSQGIDNV(MSE)AAAWCCALDFAPPKLTVVLDK(MSE)T KTREFIEQSG(MSE)FVIQVPTVAQLQLTHRVGSQSLADDANKLLNCGVELFE(MSE)AGHDLPFVAGCSAWLACKLIPE PNNQLQYDLFIAEVIGAWADTQVFNHGHWHFDTAPADKRSLHYIAGGQFYAIGESFNAD ; _entity_poly.pdbx_seq_one_letter_code_can ;GMHHQRKTHVDNNIAAVELAKAYRLLNHGPTVLVSARSQGIDNVMAAAWCCALDFAPPKLTVVLDKMTKTREFIEQSGMF VIQVPTVAQLQLTHRVGSQSLADDANKLLNCGVELFEMAGHDLPFVAGCSAWLACKLIPEPNNQLQYDLFIAEVIGAWAD TQVFNHGHWHFDTAPADKRSLHYIAGGQFYAIGESFNAD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 375054 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 HIS n 1 4 HIS n 1 5 GLN n 1 6 ARG n 1 7 LYS n 1 8 THR n 1 9 HIS n 1 10 VAL n 1 11 ASP n 1 12 ASN n 1 13 ASN n 1 14 ILE n 1 15 ALA n 1 16 ALA n 1 17 VAL n 1 18 GLU n 1 19 LEU n 1 20 ALA n 1 21 LYS n 1 22 ALA n 1 23 TYR n 1 24 ARG n 1 25 LEU n 1 26 LEU n 1 27 ASN n 1 28 HIS n 1 29 GLY n 1 30 PRO n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 VAL n 1 35 SER n 1 36 ALA n 1 37 ARG n 1 38 SER n 1 39 GLN n 1 40 GLY n 1 41 ILE n 1 42 ASP n 1 43 ASN n 1 44 VAL n 1 45 MSE n 1 46 ALA n 1 47 ALA n 1 48 ALA n 1 49 TRP n 1 50 CYS n 1 51 CYS n 1 52 ALA n 1 53 LEU n 1 54 ASP n 1 55 PHE n 1 56 ALA n 1 57 PRO n 1 58 PRO n 1 59 LYS n 1 60 LEU n 1 61 THR n 1 62 VAL n 1 63 VAL n 1 64 LEU n 1 65 ASP n 1 66 LYS n 1 67 MSE n 1 68 THR n 1 69 LYS n 1 70 THR n 1 71 ARG n 1 72 GLU n 1 73 PHE n 1 74 ILE n 1 75 GLU n 1 76 GLN n 1 77 SER n 1 78 GLY n 1 79 MSE n 1 80 PHE n 1 81 VAL n 1 82 ILE n 1 83 GLN n 1 84 VAL n 1 85 PRO n 1 86 THR n 1 87 VAL n 1 88 ALA n 1 89 GLN n 1 90 LEU n 1 91 GLN n 1 92 LEU n 1 93 THR n 1 94 HIS n 1 95 ARG n 1 96 VAL n 1 97 GLY n 1 98 SER n 1 99 GLN n 1 100 SER n 1 101 LEU n 1 102 ALA n 1 103 ASP n 1 104 ASP n 1 105 ALA n 1 106 ASN n 1 107 LYS n 1 108 LEU n 1 109 LEU n 1 110 ASN n 1 111 CYS n 1 112 GLY n 1 113 VAL n 1 114 GLU n 1 115 LEU n 1 116 PHE n 1 117 GLU n 1 118 MSE n 1 119 ALA n 1 120 GLY n 1 121 HIS n 1 122 ASP n 1 123 LEU n 1 124 PRO n 1 125 PHE n 1 126 VAL n 1 127 ALA n 1 128 GLY n 1 129 CYS n 1 130 SER n 1 131 ALA n 1 132 TRP n 1 133 LEU n 1 134 ALA n 1 135 CYS n 1 136 LYS n 1 137 LEU n 1 138 ILE n 1 139 PRO n 1 140 GLU n 1 141 PRO n 1 142 ASN n 1 143 ASN n 1 144 GLN n 1 145 LEU n 1 146 GLN n 1 147 TYR n 1 148 ASP n 1 149 LEU n 1 150 PHE n 1 151 ILE n 1 152 ALA n 1 153 GLU n 1 154 VAL n 1 155 ILE n 1 156 GLY n 1 157 ALA n 1 158 TRP n 1 159 ALA n 1 160 ASP n 1 161 THR n 1 162 GLN n 1 163 VAL n 1 164 PHE n 1 165 ASN n 1 166 HIS n 1 167 GLY n 1 168 HIS n 1 169 TRP n 1 170 HIS n 1 171 PHE n 1 172 ASP n 1 173 THR n 1 174 ALA n 1 175 PRO n 1 176 ALA n 1 177 ASP n 1 178 LYS n 1 179 ARG n 1 180 SER n 1 181 LEU n 1 182 HIS n 1 183 TYR n 1 184 ILE n 1 185 ALA n 1 186 GLY n 1 187 GLY n 1 188 GLN n 1 189 PHE n 1 190 TYR n 1 191 ALA n 1 192 ILE n 1 193 GLY n 1 194 GLU n 1 195 SER n 1 196 PHE n 1 197 ASN n 1 198 ALA n 1 199 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Sbal_0626, YP_001049024.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain OS155 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shewanella baltica' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 325240 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc BAA-1091 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A3D092_SHEB5 _struct_ref.pdbx_db_accession A3D092 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MHHQRKTHVDNNIAAVELAKAYRLLNHGPTVLVSARSQGIDNVMAAAWCCALDFAPPKLTVVLDKMTKTREFIEQSGMFV IQVPTVAQLQLTHRVGSQSLADDANKLLNCGVELFEMAGHDLPFVAGCSAWLACKLIPEPNNQLQYDLFIAEVIGAWADT QVFNHGHWHFDTAPADKRSLHYIAGGQFYAIGESFNAD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HMZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 199 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A3D092 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 198 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 198 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3HMZ _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A3D092 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3HMZ # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.22 _exptl_crystal.description ;THE STATISTICS REPORTED IN REMARK 200 WERE COMPUTED WITH XSCALE WITH FRIEDEL PAIRS KEPT SEPARATE. ; _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;0.2000M Sodium ThioCyanate, 20.0000% PEG-3350, No Buffer pH 6.9, Additive: 0.0009M flavin-adenine dinucleotide (FAD), VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2009-04-17 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol SAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97797 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength 0.97797 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3HMZ _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 26.288 _reflns.number_obs 38635 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.percent_possible_obs 99.800 _reflns.B_iso_Wilson_estimate 19.061 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.150 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.50 1.55 25569 ? 6939 0.853 1.7 ? ? ? ? ? 99.40 1 1 1.55 1.62 31077 ? 8307 0.576 2.4 ? ? ? ? ? 99.80 2 1 1.62 1.69 26159 ? 6968 0.415 3.3 ? ? ? ? ? 99.90 3 1 1.69 1.78 28066 ? 7442 0.271 4.9 ? ? ? ? ? 99.80 4 1 1.78 1.89 27484 ? 7250 0.175 7.5 ? ? ? ? ? 99.90 5 1 1.89 2.04 28698 ? 7562 0.107 12.0 ? ? ? ? ? 99.80 6 1 2.04 2.24 27380 ? 7207 0.069 17.9 ? ? ? ? ? 99.80 7 1 2.24 2.56 28031 ? 7348 0.052 23.3 ? ? ? ? ? 99.90 8 1 2.56 3.23 28379 ? 7445 0.033 32.6 ? ? ? ? ? 99.90 9 1 3.23 26.288 28288 ? 7407 0.023 45.9 ? ? ? ? ? 99.60 10 1 # _refine.entry_id 3HMZ _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 26.288 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.870 _refine.ls_number_reflns_obs 38596 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ETHYLNE GLYCOL (EDO) AND IMIDAZOLE (IMD) MOLECULES FROM THE CRYOPROTECTION/PURIFICATION SOLUTIONS ARE MODELED. 4. COFACTOR MOLECULE FMN IS MODELED BASED ON THE ELCTRON DENSITY. 5. AN UNKNOWN LIGAND (UNL) HAS BEEN MODELED NEAR FMN. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.130 _refine.ls_R_factor_R_work 0.129 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.150 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1933 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 23.052 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.450 _refine.aniso_B[2][2] 0.450 _refine.aniso_B[3][3] -0.670 _refine.aniso_B[1][2] 0.220 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.979 _refine.correlation_coeff_Fo_to_Fc_free 0.974 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.060 _refine.pdbx_overall_ESU_R_Free 0.052 _refine.overall_SU_ML 0.031 _refine.overall_SU_B 1.886 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 60.49 _refine.B_iso_min 10.50 _refine.occupancy_max 1.00 _refine.occupancy_min 0.15 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1470 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 65 _refine_hist.number_atoms_solvent 219 _refine_hist.number_atoms_total 1754 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 26.288 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1680 0.016 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1105 0.004 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2305 1.758 1.966 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2720 1.395 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 224 4.932 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 80 34.181 25.125 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 269 11.900 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 7 14.589 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 254 0.111 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1904 0.008 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 333 0.002 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1005 1.943 2.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 403 1.031 2.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1631 2.726 3.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 675 2.347 2.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 656 3.322 3.000 ? ? r_rigid_bond_restr 'X-RAY DIFFRACTION' 2785 1.469 3.000 ? ? r_sphericity_free 'X-RAY DIFFRACTION' 229 8.267 3.000 ? ? r_sphericity_bonded 'X-RAY DIFFRACTION' 2735 3.804 3.000 ? ? # _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.539 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.580 _refine_ls_shell.number_reflns_R_work 2674 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.197 _refine_ls_shell.R_factor_R_free 0.228 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 143 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2817 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3HMZ _struct.title ;CRYSTAL STRUCTURE OF A FMN-BINDING DOMAIN OF FLAVIN REDUCTASES-LIKE ENZYME (SBAL_0626) FROM SHEWANELLA BALTICA OS155 AT 1.50 A RESOLUTION ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;FMN-BINDING DOMAIN OF FLAVIN REDUCTASES-LIKE ENZYME, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.entry_id 3HMZ # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 6 ? # _struct_biol.id 1 _struct_biol.details ;CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 18 ? LEU A 26 ? GLU A 17 LEU A 25 5 ? 9 HELX_P HELX_P2 2 THR A 68 ? GLY A 78 ? THR A 67 GLY A 77 1 ? 11 HELX_P HELX_P3 3 THR A 86 ? ALA A 88 ? THR A 85 ALA A 87 5 ? 3 HELX_P HELX_P4 4 GLN A 89 ? GLY A 97 ? GLN A 88 GLY A 96 1 ? 9 HELX_P HELX_P5 5 SER A 100 ? ASP A 104 ? SER A 99 ASP A 103 5 ? 5 HELX_P HELX_P6 6 ASN A 106 ? GLY A 112 ? ASN A 105 GLY A 111 1 ? 7 HELX_P HELX_P7 7 GLU A 140 ? ASP A 148 ? GLU A 139 ASP A 147 1 ? 9 HELX_P HELX_P8 8 PRO A 175 ? ARG A 179 ? PRO A 174 ARG A 178 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 44 C ? ? ? 1_555 A MSE 45 N ? ? A VAL 43 A MSE 44 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A MSE 45 C ? ? ? 1_555 A ALA 46 N ? ? A MSE 44 A ALA 45 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A LYS 66 C ? ? ? 1_555 A MSE 67 N ? ? A LYS 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale4 covale both ? A MSE 67 C ? ? ? 1_555 A THR 68 N ? ? A MSE 66 A THR 67 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale5 covale both ? A GLY 78 C ? ? ? 1_555 A MSE 79 N ? ? A GLY 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale6 covale both ? A MSE 79 C ? ? ? 1_555 A PHE 80 N ? ? A MSE 78 A PHE 79 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale both ? A GLU 117 C ? ? ? 1_555 A MSE 118 N ? ? A GLU 116 A MSE 117 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale8 covale both ? A MSE 118 C ? ? ? 1_555 A ALA 119 N ? ? A MSE 117 A ALA 118 1_555 ? ? ? ? ? ? ? 1.346 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 56 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 55 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 57 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 56 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.25 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 4 ? C ? 2 ? D ? 2 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 14 ? ALA A 16 ? ILE A 13 ALA A 15 A 2 LEU A 149 ? ASP A 160 ? LEU A 148 ASP A 159 A 3 ALA A 131 ? ILE A 138 ? ALA A 130 ILE A 137 A 4 MSE A 79 ? VAL A 84 ? MSE A 78 VAL A 83 A 5 VAL A 32 ? SER A 38 ? VAL A 31 SER A 37 A 6 ILE A 41 ? ALA A 47 ? ILE A 40 ALA A 46 B 1 ILE A 14 ? ALA A 16 ? ILE A 13 ALA A 15 B 2 LEU A 149 ? ASP A 160 ? LEU A 148 ASP A 159 B 3 LYS A 59 ? VAL A 63 ? LYS A 58 VAL A 62 B 4 CYS A 50 ? ASP A 54 ? CYS A 49 ASP A 53 C 1 LEU A 115 ? PHE A 116 ? LEU A 114 PHE A 115 C 2 PHE A 125 ? VAL A 126 ? PHE A 124 VAL A 125 D 1 PHE A 164 ? ASN A 165 ? PHE A 163 ASN A 164 D 2 HIS A 168 ? TRP A 169 ? HIS A 167 TRP A 168 E 1 LEU A 181 ? ALA A 185 ? LEU A 180 ALA A 184 E 2 GLN A 188 ? ALA A 191 ? GLN A 187 ALA A 190 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 15 ? N ALA A 14 O ALA A 159 ? O ALA A 158 A 2 3 O ILE A 151 ? O ILE A 150 N ILE A 138 ? N ILE A 137 A 3 4 O CYS A 135 ? O CYS A 134 N PHE A 80 ? N PHE A 79 A 4 5 O GLN A 83 ? O GLN A 82 N LEU A 33 ? N LEU A 32 A 5 6 N VAL A 32 ? N VAL A 31 O ALA A 47 ? O ALA A 46 B 1 2 N ALA A 15 ? N ALA A 14 O ALA A 159 ? O ALA A 158 B 2 3 O PHE A 150 ? O PHE A 149 N VAL A 62 ? N VAL A 61 B 3 4 O THR A 61 ? O THR A 60 N CYS A 51 ? N CYS A 50 C 1 2 N PHE A 116 ? N PHE A 115 O PHE A 125 ? O PHE A 124 D 1 2 N ASN A 165 ? N ASN A 164 O HIS A 168 ? O HIS A 167 E 1 2 N ALA A 185 ? N ALA A 184 O GLN A 188 ? O GLN A 187 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMN 500 ? 24 'BINDING SITE FOR RESIDUE FMN A 500' AC2 Software A UNL 501 ? 7 'BINDING SITE FOR RESIDUE UNL A 501' AC3 Software A IMD 199 ? 6 'BINDING SITE FOR RESIDUE IMD A 199' AC4 Software A EDO 200 ? 8 'BINDING SITE FOR RESIDUE EDO A 200' AC5 Software A EDO 201 ? 5 'BINDING SITE FOR RESIDUE EDO A 201' AC6 Software A EDO 202 ? 5 'BINDING SITE FOR RESIDUE EDO A 202' AC7 Software A EDO 203 ? 6 'BINDING SITE FOR RESIDUE EDO A 203' AC8 Software A EDO 204 ? 4 'BINDING SITE FOR RESIDUE EDO A 204' AC9 Software A EDO 205 ? 5 'BINDING SITE FOR RESIDUE EDO A 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 24 ASN A 43 ? ASN A 42 . ? 1_555 ? 2 AC1 24 MSE A 45 ? MSE A 44 . ? 1_555 ? 3 AC1 24 ALA A 46 ? ALA A 45 . ? 1_555 ? 4 AC1 24 ALA A 47 ? ALA A 46 . ? 1_555 ? 5 AC1 24 ALA A 48 ? ALA A 47 . ? 1_555 ? 6 AC1 24 TRP A 49 ? TRP A 48 . ? 1_555 ? 7 AC1 24 VAL A 63 ? VAL A 62 . ? 1_555 ? 8 AC1 24 LEU A 64 ? LEU A 63 . ? 1_555 ? 9 AC1 24 ASP A 65 ? ASP A 64 . ? 1_555 ? 10 AC1 24 THR A 68 ? THR A 67 . ? 1_555 ? 11 AC1 24 LYS A 69 ? LYS A 68 . ? 1_555 ? 12 AC1 24 THR A 70 ? THR A 69 . ? 1_555 ? 13 AC1 24 VAL A 96 ? VAL A 95 . ? 1_555 ? 14 AC1 24 GLY A 97 ? GLY A 96 . ? 1_555 ? 15 AC1 24 GLN A 99 ? GLN A 98 . ? 1_555 ? 16 AC1 24 SER A 100 ? SER A 99 . ? 1_555 ? 17 AC1 24 LEU A 101 ? LEU A 100 . ? 1_555 ? 18 AC1 24 LYS A 107 ? LYS A 106 . ? 1_555 ? 19 AC1 24 TYR A 183 ? TYR A 182 . ? 1_555 ? 20 AC1 24 PHE A 189 ? PHE A 188 . ? 1_555 ? 21 AC1 24 EDO G . ? EDO A 202 . ? 1_555 ? 22 AC1 24 HOH K . ? HOH A 295 . ? 1_555 ? 23 AC1 24 HOH K . ? HOH A 305 . ? 1_555 ? 24 AC1 24 UNL C . ? UNL A 501 . ? 1_555 ? 25 AC2 7 ASN A 27 ? ASN A 26 . ? 6_765 ? 26 AC2 7 TRP A 49 ? TRP A 48 . ? 1_555 ? 27 AC2 7 PHE A 55 ? PHE A 54 . ? 6_765 ? 28 AC2 7 EDO I . ? EDO A 204 . ? 1_555 ? 29 AC2 7 HOH K . ? HOH A 362 . ? 1_555 ? 30 AC2 7 HOH K . ? HOH A 419 . ? 1_555 ? 31 AC2 7 FMN B . ? FMN A 500 . ? 1_555 ? 32 AC3 6 GLY A 29 ? GLY A 28 . ? 1_555 ? 33 AC3 6 GLY A 29 ? GLY A 28 . ? 6_765 ? 34 AC3 6 CYS A 50 ? CYS A 49 . ? 1_555 ? 35 AC3 6 CYS A 50 ? CYS A 49 . ? 6_765 ? 36 AC3 6 CYS A 51 ? CYS A 50 . ? 1_555 ? 37 AC3 6 HOH K . ? HOH A 241 . ? 1_555 ? 38 AC4 8 ILE A 14 ? ILE A 13 . ? 1_555 ? 39 AC4 8 PHE A 116 ? PHE A 115 . ? 1_555 ? 40 AC4 8 ALA A 127 ? ALA A 126 . ? 1_555 ? 41 AC4 8 GLY A 128 ? GLY A 127 . ? 1_555 ? 42 AC4 8 HOH K . ? HOH A 264 . ? 1_555 ? 43 AC4 8 HOH K . ? HOH A 300 . ? 1_555 ? 44 AC4 8 HOH K . ? HOH A 319 . ? 3_664 ? 45 AC4 8 HOH K . ? HOH A 412 . ? 1_555 ? 46 AC5 5 LEU A 92 ? LEU A 91 . ? 1_555 ? 47 AC5 5 ARG A 95 ? ARG A 94 . ? 1_555 ? 48 AC5 5 CYS A 111 ? CYS A 110 . ? 1_555 ? 49 AC5 5 HOH K . ? HOH A 265 . ? 1_555 ? 50 AC5 5 HOH K . ? HOH A 304 . ? 3_664 ? 51 AC6 5 MSE A 67 ? MSE A 66 . ? 1_555 ? 52 AC6 5 SER A 98 ? SER A 97 . ? 1_555 ? 53 AC6 5 GLN A 99 ? GLN A 98 . ? 1_555 ? 54 AC6 5 HOH K . ? HOH A 295 . ? 1_555 ? 55 AC6 5 FMN B . ? FMN A 500 . ? 1_555 ? 56 AC7 6 ALA A 20 ? ALA A 19 . ? 3_664 ? 57 AC7 6 ALA A 56 ? ALA A 55 . ? 3_664 ? 58 AC7 6 ALA A 88 ? ALA A 87 . ? 1_555 ? 59 AC7 6 ASP A 177 ? ASP A 176 . ? 1_555 ? 60 AC7 6 LYS A 178 ? LYS A 177 . ? 1_555 ? 61 AC7 6 HOH K . ? HOH A 248 . ? 1_555 ? 62 AC8 4 ASP A 65 ? ASP A 64 . ? 1_555 ? 63 AC8 4 ASP A 148 ? ASP A 147 . ? 1_555 ? 64 AC8 4 HOH K . ? HOH A 388 . ? 6_765 ? 65 AC8 4 UNL C . ? UNL A 501 . ? 1_555 ? 66 AC9 5 MSE A 67 ? MSE A 66 . ? 1_555 ? 67 AC9 5 THR A 68 ? THR A 67 . ? 1_555 ? 68 AC9 5 LYS A 69 ? LYS A 68 . ? 1_555 ? 69 AC9 5 GLU A 72 ? GLU A 71 . ? 1_555 ? 70 AC9 5 HOH K . ? HOH A 344 . ? 1_555 ? # _atom_sites.entry_id 3HMZ _atom_sites.fract_transf_matrix[1][1] 0.013400 _atom_sites.fract_transf_matrix[1][2] 0.007736 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015473 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013494 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 HIS 3 2 ? ? ? A . n A 1 4 HIS 4 3 ? ? ? A . n A 1 5 GLN 5 4 ? ? ? A . n A 1 6 ARG 6 5 ? ? ? A . n A 1 7 LYS 7 6 ? ? ? A . n A 1 8 THR 8 7 ? ? ? A . n A 1 9 HIS 9 8 8 HIS HIS A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 ASP 11 10 10 ASP ASP A . n A 1 12 ASN 12 11 11 ASN ASN A . n A 1 13 ASN 13 12 12 ASN ASN A . n A 1 14 ILE 14 13 13 ILE ILE A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 ALA 16 15 15 ALA ALA A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 LEU 19 18 18 LEU LEU A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 LYS 21 20 20 LYS LYS A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 TYR 23 22 22 TYR TYR A . n A 1 24 ARG 24 23 23 ARG ARG A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 LEU 26 25 25 LEU LEU A . n A 1 27 ASN 27 26 26 ASN ASN A . n A 1 28 HIS 28 27 27 HIS HIS A . n A 1 29 GLY 29 28 28 GLY GLY A . n A 1 30 PRO 30 29 29 PRO PRO A . n A 1 31 THR 31 30 30 THR THR A . n A 1 32 VAL 32 31 31 VAL VAL A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 VAL 34 33 33 VAL VAL A . n A 1 35 SER 35 34 34 SER SER A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 ARG 37 36 36 ARG ARG A . n A 1 38 SER 38 37 37 SER SER A . n A 1 39 GLN 39 38 38 GLN GLN A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 ILE 41 40 40 ILE ILE A . n A 1 42 ASP 42 41 41 ASP ASP A . n A 1 43 ASN 43 42 42 ASN ASN A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 MSE 45 44 44 MSE MSE A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 ALA 48 47 47 ALA ALA A . n A 1 49 TRP 49 48 48 TRP TRP A . n A 1 50 CYS 50 49 49 CYS CYS A . n A 1 51 CYS 51 50 50 CYS CYS A . n A 1 52 ALA 52 51 51 ALA ALA A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 ASP 54 53 53 ASP ASP A . n A 1 55 PHE 55 54 54 PHE PHE A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 PRO 57 56 56 PRO PRO A . n A 1 58 PRO 58 57 57 PRO PRO A . n A 1 59 LYS 59 58 58 LYS LYS A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 THR 61 60 60 THR THR A . n A 1 62 VAL 62 61 61 VAL VAL A . n A 1 63 VAL 63 62 62 VAL VAL A . n A 1 64 LEU 64 63 63 LEU LEU A . n A 1 65 ASP 65 64 64 ASP ASP A . n A 1 66 LYS 66 65 65 LYS LYS A . n A 1 67 MSE 67 66 66 MSE MSE A . n A 1 68 THR 68 67 67 THR THR A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 THR 70 69 69 THR THR A . n A 1 71 ARG 71 70 70 ARG ARG A . n A 1 72 GLU 72 71 71 GLU GLU A . n A 1 73 PHE 73 72 72 PHE PHE A . n A 1 74 ILE 74 73 73 ILE ILE A . n A 1 75 GLU 75 74 74 GLU GLU A . n A 1 76 GLN 76 75 75 GLN GLN A . n A 1 77 SER 77 76 76 SER SER A . n A 1 78 GLY 78 77 77 GLY GLY A . n A 1 79 MSE 79 78 78 MSE MSE A . n A 1 80 PHE 80 79 79 PHE PHE A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 ILE 82 81 81 ILE ILE A . n A 1 83 GLN 83 82 82 GLN GLN A . n A 1 84 VAL 84 83 83 VAL VAL A . n A 1 85 PRO 85 84 84 PRO PRO A . n A 1 86 THR 86 85 85 THR THR A . n A 1 87 VAL 87 86 86 VAL VAL A . n A 1 88 ALA 88 87 87 ALA ALA A . n A 1 89 GLN 89 88 88 GLN GLN A . n A 1 90 LEU 90 89 89 LEU LEU A . n A 1 91 GLN 91 90 90 GLN GLN A . n A 1 92 LEU 92 91 91 LEU LEU A . n A 1 93 THR 93 92 92 THR THR A . n A 1 94 HIS 94 93 93 HIS HIS A . n A 1 95 ARG 95 94 94 ARG ARG A . n A 1 96 VAL 96 95 95 VAL VAL A . n A 1 97 GLY 97 96 96 GLY GLY A . n A 1 98 SER 98 97 97 SER SER A . n A 1 99 GLN 99 98 98 GLN GLN A . n A 1 100 SER 100 99 99 SER SER A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 ALA 102 101 101 ALA ALA A . n A 1 103 ASP 103 102 102 ASP ASP A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 ALA 105 104 104 ALA ALA A . n A 1 106 ASN 106 105 105 ASN ASN A . n A 1 107 LYS 107 106 106 LYS LYS A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 LEU 109 108 108 LEU LEU A . n A 1 110 ASN 110 109 109 ASN ASN A . n A 1 111 CYS 111 110 110 CYS CYS A . n A 1 112 GLY 112 111 111 GLY GLY A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 GLU 114 113 113 GLU GLU A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 PHE 116 115 115 PHE PHE A . n A 1 117 GLU 117 116 116 GLU GLU A . n A 1 118 MSE 118 117 117 MSE MSE A . n A 1 119 ALA 119 118 118 ALA ALA A . n A 1 120 GLY 120 119 119 GLY GLY A . n A 1 121 HIS 121 120 120 HIS HIS A . n A 1 122 ASP 122 121 121 ASP ASP A . n A 1 123 LEU 123 122 122 LEU LEU A . n A 1 124 PRO 124 123 123 PRO PRO A . n A 1 125 PHE 125 124 124 PHE PHE A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 ALA 127 126 126 ALA ALA A . n A 1 128 GLY 128 127 127 GLY GLY A . n A 1 129 CYS 129 128 128 CYS CYS A . n A 1 130 SER 130 129 129 SER SER A . n A 1 131 ALA 131 130 130 ALA ALA A . n A 1 132 TRP 132 131 131 TRP TRP A . n A 1 133 LEU 133 132 132 LEU LEU A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 CYS 135 134 134 CYS CYS A . n A 1 136 LYS 136 135 135 LYS LYS A . n A 1 137 LEU 137 136 136 LEU LEU A . n A 1 138 ILE 138 137 137 ILE ILE A . n A 1 139 PRO 139 138 138 PRO PRO A . n A 1 140 GLU 140 139 139 GLU GLU A . n A 1 141 PRO 141 140 140 PRO PRO A . n A 1 142 ASN 142 141 141 ASN ASN A . n A 1 143 ASN 143 142 142 ASN ASN A . n A 1 144 GLN 144 143 143 GLN GLN A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 GLN 146 145 145 GLN GLN A . n A 1 147 TYR 147 146 146 TYR TYR A . n A 1 148 ASP 148 147 147 ASP ASP A . n A 1 149 LEU 149 148 148 LEU LEU A . n A 1 150 PHE 150 149 149 PHE PHE A . n A 1 151 ILE 151 150 150 ILE ILE A . n A 1 152 ALA 152 151 151 ALA ALA A . n A 1 153 GLU 153 152 152 GLU GLU A . n A 1 154 VAL 154 153 153 VAL VAL A . n A 1 155 ILE 155 154 154 ILE ILE A . n A 1 156 GLY 156 155 155 GLY GLY A . n A 1 157 ALA 157 156 156 ALA ALA A . n A 1 158 TRP 158 157 157 TRP TRP A . n A 1 159 ALA 159 158 158 ALA ALA A . n A 1 160 ASP 160 159 159 ASP ASP A . n A 1 161 THR 161 160 160 THR THR A . n A 1 162 GLN 162 161 161 GLN GLN A . n A 1 163 VAL 163 162 162 VAL VAL A . n A 1 164 PHE 164 163 163 PHE PHE A . n A 1 165 ASN 165 164 164 ASN ASN A . n A 1 166 HIS 166 165 165 HIS HIS A . n A 1 167 GLY 167 166 166 GLY GLY A . n A 1 168 HIS 168 167 167 HIS HIS A . n A 1 169 TRP 169 168 168 TRP TRP A . n A 1 170 HIS 170 169 169 HIS HIS A . n A 1 171 PHE 171 170 170 PHE PHE A . n A 1 172 ASP 172 171 171 ASP ASP A . n A 1 173 THR 173 172 172 THR THR A . n A 1 174 ALA 174 173 173 ALA ALA A . n A 1 175 PRO 175 174 174 PRO PRO A . n A 1 176 ALA 176 175 175 ALA ALA A . n A 1 177 ASP 177 176 176 ASP ASP A . n A 1 178 LYS 178 177 177 LYS LYS A . n A 1 179 ARG 179 178 178 ARG ARG A . n A 1 180 SER 180 179 179 SER SER A . n A 1 181 LEU 181 180 180 LEU LEU A . n A 1 182 HIS 182 181 181 HIS HIS A . n A 1 183 TYR 183 182 182 TYR TYR A . n A 1 184 ILE 184 183 183 ILE ILE A . n A 1 185 ALA 185 184 184 ALA ALA A . n A 1 186 GLY 186 185 185 GLY GLY A . n A 1 187 GLY 187 186 186 GLY GLY A . n A 1 188 GLN 188 187 187 GLN GLN A . n A 1 189 PHE 189 188 188 PHE PHE A . n A 1 190 TYR 190 189 189 TYR TYR A . n A 1 191 ALA 191 190 190 ALA ALA A . n A 1 192 ILE 192 191 191 ILE ILE A . n A 1 193 GLY 193 192 192 GLY GLY A . n A 1 194 GLU 194 193 193 GLU GLU A . n A 1 195 SER 195 194 194 SER SER A . n A 1 196 PHE 196 195 195 PHE PHE A . n A 1 197 ASN 197 196 196 ASN ASN A . n A 1 198 ALA 198 197 197 ALA ALA A . n A 1 199 ASP 199 198 198 ASP ASP A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN 1 500 500 FMN FMN A . C 3 UNL 1 501 501 UNL UNL A . D 4 IMD 1 199 1 IMD IMD A . E 5 EDO 1 200 2 EDO EDO A . F 5 EDO 1 201 3 EDO EDO A . G 5 EDO 1 202 4 EDO EDO A . H 5 EDO 1 203 5 EDO EDO A . I 5 EDO 1 204 6 EDO EDO A . J 5 EDO 1 205 7 EDO EDO A . K 6 HOH 1 206 206 HOH HOH A . K 6 HOH 2 207 207 HOH HOH A . K 6 HOH 3 208 208 HOH HOH A . K 6 HOH 4 209 209 HOH HOH A . K 6 HOH 5 210 210 HOH HOH A . K 6 HOH 6 211 211 HOH HOH A . K 6 HOH 7 212 212 HOH HOH A . K 6 HOH 8 213 213 HOH HOH A . K 6 HOH 9 214 214 HOH HOH A . K 6 HOH 10 215 215 HOH HOH A . K 6 HOH 11 216 216 HOH HOH A . K 6 HOH 12 217 217 HOH HOH A . K 6 HOH 13 218 218 HOH HOH A . K 6 HOH 14 219 219 HOH HOH A . K 6 HOH 15 220 220 HOH HOH A . K 6 HOH 16 221 221 HOH HOH A . K 6 HOH 17 222 222 HOH HOH A . K 6 HOH 18 223 223 HOH HOH A . K 6 HOH 19 224 224 HOH HOH A . K 6 HOH 20 225 225 HOH HOH A . K 6 HOH 21 226 226 HOH HOH A . K 6 HOH 22 227 8 HOH HOH A . K 6 HOH 23 228 9 HOH HOH A . K 6 HOH 24 229 10 HOH HOH A . K 6 HOH 25 230 11 HOH HOH A . K 6 HOH 26 231 12 HOH HOH A . K 6 HOH 27 232 13 HOH HOH A . K 6 HOH 28 233 14 HOH HOH A . K 6 HOH 29 234 15 HOH HOH A . K 6 HOH 30 235 16 HOH HOH A . K 6 HOH 31 236 17 HOH HOH A . K 6 HOH 32 237 18 HOH HOH A . K 6 HOH 33 238 19 HOH HOH A . K 6 HOH 34 239 20 HOH HOH A . K 6 HOH 35 240 21 HOH HOH A . K 6 HOH 36 241 22 HOH HOH A . K 6 HOH 37 242 23 HOH HOH A . K 6 HOH 38 243 24 HOH HOH A . K 6 HOH 39 244 25 HOH HOH A . K 6 HOH 40 245 26 HOH HOH A . K 6 HOH 41 246 27 HOH HOH A . K 6 HOH 42 247 28 HOH HOH A . K 6 HOH 43 248 29 HOH HOH A . K 6 HOH 44 249 30 HOH HOH A . K 6 HOH 45 250 31 HOH HOH A . K 6 HOH 46 251 32 HOH HOH A . K 6 HOH 47 252 33 HOH HOH A . K 6 HOH 48 253 34 HOH HOH A . K 6 HOH 49 254 35 HOH HOH A . K 6 HOH 50 255 36 HOH HOH A . K 6 HOH 51 256 37 HOH HOH A . K 6 HOH 52 257 38 HOH HOH A . K 6 HOH 53 258 39 HOH HOH A . K 6 HOH 54 259 40 HOH HOH A . K 6 HOH 55 260 41 HOH HOH A . K 6 HOH 56 261 42 HOH HOH A . K 6 HOH 57 262 43 HOH HOH A . K 6 HOH 58 263 44 HOH HOH A . K 6 HOH 59 264 45 HOH HOH A . K 6 HOH 60 265 46 HOH HOH A . K 6 HOH 61 266 47 HOH HOH A . K 6 HOH 62 267 48 HOH HOH A . K 6 HOH 63 268 49 HOH HOH A . K 6 HOH 64 269 50 HOH HOH A . K 6 HOH 65 270 51 HOH HOH A . K 6 HOH 66 271 52 HOH HOH A . K 6 HOH 67 272 53 HOH HOH A . K 6 HOH 68 273 54 HOH HOH A . K 6 HOH 69 274 55 HOH HOH A . K 6 HOH 70 275 56 HOH HOH A . K 6 HOH 71 276 57 HOH HOH A . K 6 HOH 72 277 58 HOH HOH A . K 6 HOH 73 278 59 HOH HOH A . K 6 HOH 74 279 60 HOH HOH A . K 6 HOH 75 280 61 HOH HOH A . K 6 HOH 76 281 62 HOH HOH A . K 6 HOH 77 282 63 HOH HOH A . K 6 HOH 78 283 64 HOH HOH A . K 6 HOH 79 284 65 HOH HOH A . K 6 HOH 80 285 66 HOH HOH A . K 6 HOH 81 286 67 HOH HOH A . K 6 HOH 82 287 68 HOH HOH A . K 6 HOH 83 288 69 HOH HOH A . K 6 HOH 84 289 70 HOH HOH A . K 6 HOH 85 290 71 HOH HOH A . K 6 HOH 86 291 72 HOH HOH A . K 6 HOH 87 292 73 HOH HOH A . K 6 HOH 88 293 74 HOH HOH A . K 6 HOH 89 294 75 HOH HOH A . K 6 HOH 90 295 76 HOH HOH A . K 6 HOH 91 296 77 HOH HOH A . K 6 HOH 92 297 78 HOH HOH A . K 6 HOH 93 298 79 HOH HOH A . K 6 HOH 94 299 80 HOH HOH A . K 6 HOH 95 300 81 HOH HOH A . K 6 HOH 96 301 82 HOH HOH A . K 6 HOH 97 302 83 HOH HOH A . K 6 HOH 98 303 84 HOH HOH A . K 6 HOH 99 304 85 HOH HOH A . K 6 HOH 100 305 86 HOH HOH A . K 6 HOH 101 306 87 HOH HOH A . K 6 HOH 102 307 88 HOH HOH A . K 6 HOH 103 308 89 HOH HOH A . K 6 HOH 104 309 90 HOH HOH A . K 6 HOH 105 310 91 HOH HOH A . K 6 HOH 106 311 92 HOH HOH A . K 6 HOH 107 312 93 HOH HOH A . K 6 HOH 108 313 94 HOH HOH A . K 6 HOH 109 314 95 HOH HOH A . K 6 HOH 110 315 96 HOH HOH A . K 6 HOH 111 316 97 HOH HOH A . K 6 HOH 112 317 98 HOH HOH A . K 6 HOH 113 318 99 HOH HOH A . K 6 HOH 114 319 100 HOH HOH A . K 6 HOH 115 320 101 HOH HOH A . K 6 HOH 116 321 102 HOH HOH A . K 6 HOH 117 322 103 HOH HOH A . K 6 HOH 118 323 104 HOH HOH A . K 6 HOH 119 324 105 HOH HOH A . K 6 HOH 120 325 106 HOH HOH A . K 6 HOH 121 326 107 HOH HOH A . K 6 HOH 122 327 108 HOH HOH A . K 6 HOH 123 328 109 HOH HOH A . K 6 HOH 124 329 110 HOH HOH A . K 6 HOH 125 330 111 HOH HOH A . K 6 HOH 126 331 112 HOH HOH A . K 6 HOH 127 332 113 HOH HOH A . K 6 HOH 128 333 114 HOH HOH A . K 6 HOH 129 334 115 HOH HOH A . K 6 HOH 130 335 116 HOH HOH A . K 6 HOH 131 336 117 HOH HOH A . K 6 HOH 132 337 118 HOH HOH A . K 6 HOH 133 338 119 HOH HOH A . K 6 HOH 134 339 120 HOH HOH A . K 6 HOH 135 340 121 HOH HOH A . K 6 HOH 136 341 122 HOH HOH A . K 6 HOH 137 342 123 HOH HOH A . K 6 HOH 138 343 124 HOH HOH A . K 6 HOH 139 344 125 HOH HOH A . K 6 HOH 140 345 126 HOH HOH A . K 6 HOH 141 346 127 HOH HOH A . K 6 HOH 142 347 128 HOH HOH A . K 6 HOH 143 348 129 HOH HOH A . K 6 HOH 144 349 130 HOH HOH A . K 6 HOH 145 350 131 HOH HOH A . K 6 HOH 146 351 132 HOH HOH A . K 6 HOH 147 352 133 HOH HOH A . K 6 HOH 148 353 134 HOH HOH A . K 6 HOH 149 354 135 HOH HOH A . K 6 HOH 150 355 136 HOH HOH A . K 6 HOH 151 356 137 HOH HOH A . K 6 HOH 152 357 138 HOH HOH A . K 6 HOH 153 358 139 HOH HOH A . K 6 HOH 154 359 140 HOH HOH A . K 6 HOH 155 360 141 HOH HOH A . K 6 HOH 156 361 142 HOH HOH A . K 6 HOH 157 362 143 HOH HOH A . K 6 HOH 158 363 144 HOH HOH A . K 6 HOH 159 364 145 HOH HOH A . K 6 HOH 160 365 146 HOH HOH A . K 6 HOH 161 366 147 HOH HOH A . K 6 HOH 162 367 148 HOH HOH A . K 6 HOH 163 368 149 HOH HOH A . K 6 HOH 164 369 150 HOH HOH A . K 6 HOH 165 370 151 HOH HOH A . K 6 HOH 166 371 152 HOH HOH A . K 6 HOH 167 372 153 HOH HOH A . K 6 HOH 168 373 154 HOH HOH A . K 6 HOH 169 374 155 HOH HOH A . K 6 HOH 170 375 156 HOH HOH A . K 6 HOH 171 376 157 HOH HOH A . K 6 HOH 172 377 158 HOH HOH A . K 6 HOH 173 378 159 HOH HOH A . K 6 HOH 174 379 160 HOH HOH A . K 6 HOH 175 380 161 HOH HOH A . K 6 HOH 176 381 162 HOH HOH A . K 6 HOH 177 382 163 HOH HOH A . K 6 HOH 178 383 164 HOH HOH A . K 6 HOH 179 384 165 HOH HOH A . K 6 HOH 180 385 166 HOH HOH A . K 6 HOH 181 386 167 HOH HOH A . K 6 HOH 182 387 168 HOH HOH A . K 6 HOH 183 388 169 HOH HOH A . K 6 HOH 184 389 170 HOH HOH A . K 6 HOH 185 390 171 HOH HOH A . K 6 HOH 186 391 172 HOH HOH A . K 6 HOH 187 392 173 HOH HOH A . K 6 HOH 188 393 174 HOH HOH A . K 6 HOH 189 394 175 HOH HOH A . K 6 HOH 190 395 176 HOH HOH A . K 6 HOH 191 396 177 HOH HOH A . K 6 HOH 192 397 178 HOH HOH A . K 6 HOH 193 398 179 HOH HOH A . K 6 HOH 194 399 180 HOH HOH A . K 6 HOH 195 400 181 HOH HOH A . K 6 HOH 196 401 182 HOH HOH A . K 6 HOH 197 402 183 HOH HOH A . K 6 HOH 198 403 184 HOH HOH A . K 6 HOH 199 404 185 HOH HOH A . K 6 HOH 200 405 186 HOH HOH A . K 6 HOH 201 406 187 HOH HOH A . K 6 HOH 202 407 188 HOH HOH A . K 6 HOH 203 408 189 HOH HOH A . K 6 HOH 204 409 190 HOH HOH A . K 6 HOH 205 410 191 HOH HOH A . K 6 HOH 206 411 192 HOH HOH A . K 6 HOH 207 412 193 HOH HOH A . K 6 HOH 208 413 194 HOH HOH A . K 6 HOH 209 414 195 HOH HOH A . K 6 HOH 210 415 196 HOH HOH A . K 6 HOH 211 416 197 HOH HOH A . K 6 HOH 212 417 198 HOH HOH A . K 6 HOH 213 418 199 HOH HOH A . K 6 HOH 214 419 200 HOH HOH A . K 6 HOH 215 420 201 HOH HOH A . K 6 HOH 216 421 202 HOH HOH A . K 6 HOH 217 422 203 HOH HOH A . K 6 HOH 218 423 204 HOH HOH A . K 6 HOH 219 424 205 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 45 A MSE 44 ? MET SELENOMETHIONINE 2 A MSE 67 A MSE 66 ? MET SELENOMETHIONINE 3 A MSE 79 A MSE 78 ? MET SELENOMETHIONINE 4 A MSE 118 A MSE 117 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9240 ? 1 MORE -11 ? 1 'SSA (A^2)' 14520 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 111.9405000000 -0.8660254038 0.5000000000 0.0000000000 64.6288778082 0.0000000000 0.0000000000 -1.0000000000 24.7023333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0053 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.entry_id 3HMZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 ND2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 196 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 404 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS 8 ? CG ? A HIS 9 CG 2 1 Y 1 A HIS 8 ? ND1 ? A HIS 9 ND1 3 1 Y 1 A HIS 8 ? CD2 ? A HIS 9 CD2 4 1 Y 1 A HIS 8 ? CE1 ? A HIS 9 CE1 5 1 Y 1 A HIS 8 ? NE2 ? A HIS 9 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A HIS 2 ? A HIS 3 4 1 Y 1 A HIS 3 ? A HIS 4 5 1 Y 1 A GLN 4 ? A GLN 5 6 1 Y 1 A ARG 5 ? A ARG 6 7 1 Y 1 A LYS 6 ? A LYS 7 8 1 Y 1 A THR 7 ? A THR 8 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 'UNKNOWN LIGAND' UNL 4 IMIDAZOLE IMD 5 1,2-ETHANEDIOL EDO 6 water HOH #