HEADER TRANSPORT PROTEIN 29-MAY-09 3HN0 TITLE CRYSTAL STRUCTURE OF AN ABC TRANSPORTER (BDI_1369) FROM TITLE 2 PARABACTEROIDES DISTASONIS AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRATE TRANSPORT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 21-302; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES DISTASONIS; SOURCE 3 ORGANISM_TAXID: 435591; SOURCE 4 ATCC: 8503; SOURCE 5 GENE: BDI_1369, YP_001302749.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ABC TRANSPORTER, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSPORT KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3HN0 1 REMARK SEQADV REVDAT 5 24-JUL-19 3HN0 1 REMARK LINK REVDAT 4 01-NOV-17 3HN0 1 REMARK REVDAT 3 13-JUL-11 3HN0 1 VERSN REVDAT 2 28-JUL-10 3HN0 1 TITLE KEYWDS REVDAT 1 07-JUL-09 3HN0 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF NITRATE TRANSPORT PROTEIN JRNL TITL 2 (YP_001302749.1) FROM PARABACTEROIDES DISTASONIS ATCC 8503 JRNL TITL 3 AT 1.75 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 54272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2759 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3698 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4325 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 594 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.496 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4667 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3153 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6404 ; 1.506 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7781 ; 0.929 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 631 ; 5.667 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;36.897 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 792 ;13.382 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.019 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 751 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5235 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 907 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2930 ; 2.001 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1166 ; 0.575 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4786 ; 3.251 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1737 ; 4.853 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1589 ; 7.134 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5645 14.0073 28.3075 REMARK 3 T TENSOR REMARK 3 T11: 0.0039 T22: 0.0083 REMARK 3 T33: 0.0036 T12: 0.0005 REMARK 3 T13: 0.0008 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.6178 L22: 1.1349 REMARK 3 L33: 0.6420 L12: 0.0180 REMARK 3 L13: 0.1346 L23: -0.0584 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: -0.0618 S13: 0.0094 REMARK 3 S21: 0.0356 S22: -0.0078 S23: 0.0326 REMARK 3 S31: 0.0404 S32: 0.0198 S33: -0.0064 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 302 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3720 -1.1146 1.5297 REMARK 3 T TENSOR REMARK 3 T11: 0.0492 T22: 0.0200 REMARK 3 T33: 0.0502 T12: 0.0121 REMARK 3 T13: 0.0281 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.2505 L22: 1.4475 REMARK 3 L33: 1.5018 L12: -0.5048 REMARK 3 L13: -0.3214 L23: -0.1324 REMARK 3 S TENSOR REMARK 3 S11: -0.1076 S12: -0.1054 S13: -0.2457 REMARK 3 S21: 0.1134 S22: 0.0201 S23: 0.0857 REMARK 3 S31: 0.1222 S32: -0.0301 S33: 0.0875 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 PHOSPHATE (PO4), ETHYLENE GLYCOL (EDO), AND POLYETHYLENE GLYCOL REMARK 3 (PEG) FROM THE CRYSTALLIZATION/CRYOPROTECTANT SOLUTIONS HAVE REMARK 3 BEEN MODELED INTO THE SOLVENT STRUCTURE. REMARK 4 REMARK 4 3HN0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97889 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54325 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.709 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 6.1440 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : 0.43500 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NH4H2PO4, 20.0000% PEG-3350, REMARK 280 NO BUFFER PH 4.6, VAPOR DIFFUSION, SITTING DROP, NANODROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.81350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.00750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.87750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.00750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.81350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.87750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAINS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 THR A 21 REMARK 465 GLU A 22 REMARK 465 GLY B 0 REMARK 465 LYS B 301 REMARK 465 GLN B 302 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 CE NZ REMARK 470 GLU A 115 CD OE1 OE2 REMARK 470 ASN A 195 CG OD1 ND2 REMARK 470 LYS A 270 CE NZ REMARK 470 LYS A 286 CE NZ REMARK 470 GLU A 300 CD OE1 OE2 REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 ASP B 23 CG OD1 OD2 REMARK 470 LYS B 57 CD CE NZ REMARK 470 LYS B 90 NZ REMARK 470 LYS B 114 CD CE NZ REMARK 470 ARG B 132 CZ NH1 NH2 REMARK 470 LEU B 159 CG CD1 CD2 REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 LYS B 179 CD CE NZ REMARK 470 LYS B 286 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 272 O HOH A 591 2.17 REMARK 500 O HOH A 466 O HOH B 498 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 196 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 114 -124.11 -78.15 REMARK 500 ASP A 141 55.73 -140.20 REMARK 500 TYR A 262 132.87 -175.31 REMARK 500 GLU A 284 77.39 -150.99 REMARK 500 THR B 104 -150.98 -122.47 REMARK 500 THR B 104 -150.98 -111.23 REMARK 500 TYR B 262 123.25 -174.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394807 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 21-302) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3HN0 A 21 302 UNP A6LBR3 A6LBR3_PARD8 21 302 DBREF 3HN0 B 21 302 UNP A6LBR3 A6LBR3_PARD8 21 302 SEQADV 3HN0 GLY A 0 UNP A6LBR3 EXPRESSION TAG SEQADV 3HN0 GLY B 0 UNP A6LBR3 EXPRESSION TAG SEQRES 1 A 283 GLY THR GLU ASP THR VAL ILE LYS VAL SER VAL LEU ARG SEQRES 2 A 283 GLY PRO SER VAL ILE ALA PHE ALA ASP TRP LEU GLU ASN SEQRES 3 A 283 PRO PRO ILE ILE ASP ASN LYS LYS VAL GLN VAL LYS VAL SEQRES 4 A 283 VAL ASP SER PRO ASP LEU ALA GLN ALA LEU LEU ILE LYS SEQRES 5 A 283 GLN GLU THR ASP ILE ALA VAL LEU PRO MSE ILE ASN ALA SEQRES 6 A 283 ALA ASN LEU TYR ASN LYS GLY ILE LYS ILE LYS LEU ALA SEQRES 7 A 283 GLY CYS PRO ILE TRP GLY THR LEU TYR LEU VAL GLU LYS SEQRES 8 A 283 THR PRO LEU LYS GLU PRO ALA LEU TYR VAL PHE GLY ASN SEQRES 9 A 283 GLY THR THR PRO ASP ILE LEU THR ARG TYR TYR LEU GLY SEQRES 10 A 283 ARG GLN ARG LEU ASP TYR PRO LEU ASN TYR ALA PHE ASN SEQRES 11 A 283 THR ALA GLY GLU ILE THR GLN GLY ILE LEU ALA GLY LYS SEQRES 12 A 283 VAL ASN ARG ALA VAL LEU GLY GLU PRO PHE LEU SER ILE SEQRES 13 A 283 ALA LEU ARG LYS ASP SER SER LEU ARG ILE THR ALA ASP SEQRES 14 A 283 LEU ASN HIS LEU THR ASP ASN ASP THR LEU GLY PHE ALA SEQRES 15 A 283 GLN THR ALA VAL VAL TYR THR PRO THR MSE GLU LYS TYR SEQRES 16 A 283 ARG ILE ALA PHE GLU ASP ALA LEU ARG ALA SER CYS GLN SEQRES 17 A 283 LYS ALA VAL ARG TYR PRO LYS GLU THR ILE HIS SER LEU SEQRES 18 A 283 GLU GLU HIS GLY ILE PHE ALA GLN GLY ALA LEU THR PRO SEQRES 19 A 283 LYS SER ILE GLU ARG CYS LYS ILE TYR TYR LEU SER ALA SEQRES 20 A 283 ILE GLU ALA LYS ASP ALA VAL MSE GLY PHE LEU ARG LEU SEQRES 21 A 283 ILE GLU GLN TYR GLU PRO LYS ALA VAL GLY GLY ARG LEU SEQRES 22 A 283 PRO ASP ALA GLY PHE ILE PRO GLU LYS GLN SEQRES 1 B 283 GLY THR GLU ASP THR VAL ILE LYS VAL SER VAL LEU ARG SEQRES 2 B 283 GLY PRO SER VAL ILE ALA PHE ALA ASP TRP LEU GLU ASN SEQRES 3 B 283 PRO PRO ILE ILE ASP ASN LYS LYS VAL GLN VAL LYS VAL SEQRES 4 B 283 VAL ASP SER PRO ASP LEU ALA GLN ALA LEU LEU ILE LYS SEQRES 5 B 283 GLN GLU THR ASP ILE ALA VAL LEU PRO MSE ILE ASN ALA SEQRES 6 B 283 ALA ASN LEU TYR ASN LYS GLY ILE LYS ILE LYS LEU ALA SEQRES 7 B 283 GLY CYS PRO ILE TRP GLY THR LEU TYR LEU VAL GLU LYS SEQRES 8 B 283 THR PRO LEU LYS GLU PRO ALA LEU TYR VAL PHE GLY ASN SEQRES 9 B 283 GLY THR THR PRO ASP ILE LEU THR ARG TYR TYR LEU GLY SEQRES 10 B 283 ARG GLN ARG LEU ASP TYR PRO LEU ASN TYR ALA PHE ASN SEQRES 11 B 283 THR ALA GLY GLU ILE THR GLN GLY ILE LEU ALA GLY LYS SEQRES 12 B 283 VAL ASN ARG ALA VAL LEU GLY GLU PRO PHE LEU SER ILE SEQRES 13 B 283 ALA LEU ARG LYS ASP SER SER LEU ARG ILE THR ALA ASP SEQRES 14 B 283 LEU ASN HIS LEU THR ASP ASN ASP THR LEU GLY PHE ALA SEQRES 15 B 283 GLN THR ALA VAL VAL TYR THR PRO THR MSE GLU LYS TYR SEQRES 16 B 283 ARG ILE ALA PHE GLU ASP ALA LEU ARG ALA SER CYS GLN SEQRES 17 B 283 LYS ALA VAL ARG TYR PRO LYS GLU THR ILE HIS SER LEU SEQRES 18 B 283 GLU GLU HIS GLY ILE PHE ALA GLN GLY ALA LEU THR PRO SEQRES 19 B 283 LYS SER ILE GLU ARG CYS LYS ILE TYR TYR LEU SER ALA SEQRES 20 B 283 ILE GLU ALA LYS ASP ALA VAL MSE GLY PHE LEU ARG LEU SEQRES 21 B 283 ILE GLU GLN TYR GLU PRO LYS ALA VAL GLY GLY ARG LEU SEQRES 22 B 283 PRO ASP ALA GLY PHE ILE PRO GLU LYS GLN MODRES 3HN0 MSE A 81 MET SELENOMETHIONINE MODRES 3HN0 MSE A 211 MET SELENOMETHIONINE MODRES 3HN0 MSE A 274 MET SELENOMETHIONINE MODRES 3HN0 MSE B 81 MET SELENOMETHIONINE MODRES 3HN0 MSE B 211 MET SELENOMETHIONINE MODRES 3HN0 MSE B 274 MET SELENOMETHIONINE HET MSE A 81 8 HET MSE A 211 8 HET MSE A 274 8 HET MSE B 81 8 HET MSE B 211 8 HET MSE B 274 8 HET PO4 A 1 5 HET PEG A 2 6 HET EDO A 5 4 HET EDO A 6 4 HET EDO B 3 4 HET EDO B 4 4 HET EDO B 7 4 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 PO4 O4 P 3- FORMUL 4 PEG C4 H10 O3 FORMUL 5 EDO 5(C2 H6 O2) FORMUL 10 HOH *594(H2 O) HELIX 1 1 PRO A 34 PHE A 39 1 6 HELIX 2 2 PHE A 39 ASN A 45 1 7 HELIX 3 3 SER A 61 LYS A 71 1 11 HELIX 4 4 MSE A 81 LYS A 90 1 10 HELIX 5 5 THR A 125 ARG A 139 1 15 HELIX 6 6 THR A 150 ALA A 160 1 11 HELIX 7 7 PRO A 171 ASP A 180 1 10 HELIX 8 8 PRO A 209 LYS A 213 5 5 HELIX 9 9 TYR A 214 TYR A 232 1 19 HELIX 10 10 TYR A 232 HIS A 243 1 12 HELIX 11 11 THR A 252 LYS A 260 1 9 HELIX 12 12 ALA A 269 GLU A 284 1 16 HELIX 13 13 PRO A 285 GLY A 289 5 5 HELIX 14 14 ASP A 294 ILE A 298 5 5 HELIX 15 15 SER B 35 ALA B 40 1 6 HELIX 16 16 ALA B 40 ASN B 45 1 6 HELIX 17 17 SER B 61 LYS B 71 1 11 HELIX 18 18 MSE B 81 LYS B 90 1 10 HELIX 19 19 THR B 125 GLN B 138 1 14 HELIX 20 20 THR B 150 ALA B 160 1 11 HELIX 21 21 PRO B 171 ASP B 180 1 10 HELIX 22 22 PRO B 209 LYS B 213 5 5 HELIX 23 23 TYR B 214 TYR B 232 1 19 HELIX 24 24 TYR B 232 HIS B 243 1 12 HELIX 25 25 THR B 252 LYS B 260 1 9 HELIX 26 26 ALA B 269 GLU B 284 1 16 HELIX 27 27 GLU B 284 GLY B 289 1 6 HELIX 28 28 ASP B 294 ILE B 298 5 5 SHEET 1 A 7 ILE A 48 ILE A 49 0 SHEET 2 A 7 LYS A 52 VAL A 59 -1 O LYS A 52 N ILE A 49 SHEET 3 A 7 VAL A 25 LEU A 31 1 N ILE A 26 O GLN A 55 SHEET 4 A 7 ILE A 76 PRO A 80 1 O ILE A 76 N SER A 29 SHEET 5 A 7 THR A 203 TYR A 207 -1 O ALA A 204 N LEU A 79 SHEET 6 A 7 LYS A 95 ILE A 101 -1 N ALA A 97 O VAL A 205 SHEET 7 A 7 ILE A 261 SER A 265 -1 O LEU A 264 N CYS A 99 SHEET 1 B 3 ARG A 165 LEU A 168 0 SHEET 2 B 3 TYR A 106 GLU A 109 -1 N VAL A 108 O ALA A 166 SHEET 3 B 3 ARG A 184 ASP A 188 -1 O THR A 186 N LEU A 107 SHEET 1 C 2 LEU A 118 TYR A 119 0 SHEET 2 C 2 LEU A 144 ASN A 145 1 O ASN A 145 N LEU A 118 SHEET 1 D 7 ILE B 48 ILE B 49 0 SHEET 2 D 7 LYS B 52 VAL B 59 -1 O LYS B 52 N ILE B 49 SHEET 3 D 7 VAL B 25 LEU B 31 1 N VAL B 30 O VAL B 59 SHEET 4 D 7 ILE B 76 PRO B 80 1 O ILE B 76 N SER B 29 SHEET 5 D 7 THR B 203 TYR B 207 -1 O ALA B 204 N LEU B 79 SHEET 6 D 7 LYS B 95 ILE B 101 -1 N ALA B 97 O VAL B 205 SHEET 7 D 7 ILE B 261 SER B 265 -1 O LEU B 264 N CYS B 99 SHEET 1 E 3 ARG B 165 LEU B 168 0 SHEET 2 E 3 TYR B 106 LYS B 110 -1 N VAL B 108 O ALA B 166 SHEET 3 E 3 LEU B 183 ASP B 188 -1 O THR B 186 N LEU B 107 SHEET 1 F 2 LEU B 118 TYR B 119 0 SHEET 2 F 2 LEU B 144 ASN B 145 1 O ASN B 145 N LEU B 118 LINK C PRO A 80 N MSE A 81 1555 1555 1.33 LINK C MSE A 81 N ILE A 82 1555 1555 1.33 LINK C THR A 210 N MSE A 211 1555 1555 1.33 LINK C MSE A 211 N GLU A 212 1555 1555 1.33 LINK C VAL A 273 N MSE A 274 1555 1555 1.32 LINK C MSE A 274 N GLY A 275 1555 1555 1.34 LINK C PRO B 80 N MSE B 81 1555 1555 1.33 LINK C MSE B 81 N ILE B 82 1555 1555 1.34 LINK C THR B 210 N MSE B 211 1555 1555 1.33 LINK C MSE B 211 N GLU B 212 1555 1555 1.33 LINK C VAL B 273 N MSE B 274 1555 1555 1.33 LINK C MSE B 274 N GLY B 275 1555 1555 1.34 CISPEP 1 THR A 111 PRO A 112 0 -0.48 CISPEP 2 GLU A 170 PRO A 171 0 4.77 CISPEP 3 THR B 111 PRO B 112 0 -0.22 CISPEP 4 GLU B 170 PRO B 171 0 1.90 SITE 1 AC1 4 ARG A 291 ASP A 294 HOH A 426 HOH A 571 SITE 1 AC2 9 EDO A 5 ARG A 223 TYR A 262 TYR A 263 SITE 2 AC2 9 LEU A 264 SER A 265 GLU A 268 ASN B 51 SITE 3 AC2 9 GLU B 242 SITE 1 AC3 7 PEG A 2 ARG A 223 CYS A 226 GLN A 227 SITE 2 AC3 7 TYR A 262 TYR A 263 HOH A 480 SITE 1 AC4 9 TRP A 102 LEU A 198 LYS A 260 TYR A 262 SITE 2 AC4 9 HOH A 311 HOH A 516 ALA B 247 GLN B 248 SITE 3 AC4 9 HOH B 346 SITE 1 AC5 4 GLY B 103 THR B 104 GLY B 169 GLU B 170 SITE 1 AC6 4 LEU A 87 LYS A 90 LEU B 144 TYR B 146 SITE 1 AC7 6 ASP B 41 GLU B 44 ASN B 45 LYS B 228 SITE 2 AC7 6 HOH B 316 HOH B 371 CRYST1 47.627 97.755 114.015 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020996 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008771 0.00000