HEADER LIGASE 29-MAY-09 3HN7 TITLE CRYSTAL STRUCTURE OF A MUREIN PEPTIDE LIGASE MPL (PSYC_0032) FROM TITLE 2 PSYCHROBACTER ARCTICUS 273-4 AT 1.65 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE UDP-N-ACETYLMURAMATE:L-ALANYL-GAMMA-D-GLUTAMYL- COMPND 5 MESO-DIAMINOPIMELATE LIGASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSYCHROBACTER ARCTICUS 273-4; SOURCE 3 ORGANISM_TAXID: 259536; SOURCE 4 GENE: MPL, PSYC_0032, YP_263340.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ATP-BINDING, NUCLEOTIDE-BINDING, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3HN7 1 SEQADV REVDAT 6 24-JUL-19 3HN7 1 REMARK LINK REVDAT 5 01-NOV-17 3HN7 1 REMARK REVDAT 4 13-JUL-11 3HN7 1 VERSN REVDAT 3 13-APR-11 3HN7 1 JRNL REVDAT 2 23-MAR-11 3HN7 1 TITLE KEYWDS REVDAT 1 16-JUN-09 3HN7 0 JRNL AUTH D.DAS,M.HERVE,J.FEUERHELM,C.L.FARR,H.J.CHIU,M.A.ELSLIGER, JRNL AUTH 2 M.W.KNUTH,H.E.KLOCK,M.D.MILLER,A.GODZIK,S.A.LESLEY, JRNL AUTH 3 A.M.DEACON,D.MENGIN-LECREULX,I.A.WILSON JRNL TITL STRUCTURE AND FUNCTION OF THE FIRST FULL-LENGTH MUREIN JRNL TITL 2 PEPTIDE LIGASE (MPL) CELL WALL RECYCLING PROTEIN. JRNL REF PLOS ONE V. 6 17624 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21445265 JRNL DOI 10.1371/JOURNAL.PONE.0017624 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2985 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4074 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 233 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3619 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 588 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 17.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.700 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3826 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2431 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5250 ; 1.594 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6004 ; 0.973 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 525 ; 5.083 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;35.969 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 622 ;11.151 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.761 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4341 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 749 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2446 ; 1.838 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1006 ; 0.541 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3964 ; 2.841 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1380 ; 4.259 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1262 ; 6.005 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6002 57.8262 37.6097 REMARK 3 T TENSOR REMARK 3 T11: 0.0667 T22: 0.0165 REMARK 3 T33: 0.0726 T12: 0.0079 REMARK 3 T13: -0.0152 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.6431 L22: 0.0126 REMARK 3 L33: 1.3809 L12: 0.0701 REMARK 3 L13: 0.3584 L23: -0.0228 REMARK 3 S TENSOR REMARK 3 S11: -0.0532 S12: -0.0968 S13: 0.0731 REMARK 3 S21: 0.0002 S22: -0.0136 S23: -0.0033 REMARK 3 S31: -0.1743 S32: -0.0137 S33: 0.0668 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 356 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1462 48.6210 20.1557 REMARK 3 T TENSOR REMARK 3 T11: 0.0158 T22: 0.0398 REMARK 3 T33: 0.0213 T12: 0.0152 REMARK 3 T13: 0.0046 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.6355 L22: 0.3929 REMARK 3 L33: 0.5463 L12: -0.0017 REMARK 3 L13: 0.1156 L23: -0.0396 REMARK 3 S TENSOR REMARK 3 S11: -0.0129 S12: 0.0380 S13: 0.0016 REMARK 3 S21: -0.0206 S22: -0.0099 S23: 0.0178 REMARK 3 S31: -0.0001 S32: -0.0869 S33: 0.0229 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 357 A 504 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7943 37.5135 20.3415 REMARK 3 T TENSOR REMARK 3 T11: 0.0342 T22: 0.0132 REMARK 3 T33: 0.0339 T12: 0.0148 REMARK 3 T13: 0.0085 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.9994 L22: 0.9153 REMARK 3 L33: 1.1943 L12: -0.0702 REMARK 3 L13: 0.4561 L23: -0.0846 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: 0.0720 S13: -0.0555 REMARK 3 S21: 0.0117 S22: -0.0455 S23: -0.0165 REMARK 3 S31: 0.0940 S32: 0.0243 S33: -0.0056 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 4 REMARK 4 3HN7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97932,0.97920 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59026 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 29.025 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 7.4790 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.51200 REMARK 200 R SYM FOR SHELL (I) : 0.51200 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NAOAC, 30.0000% PEG-4000, 0.1M REMARK 280 TRIS PH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.72600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.37750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.72600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.37750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 HIS A 210 REMARK 465 ALA A 211 REMARK 465 ASP A 212 REMARK 465 ILE A 213 REMARK 465 PHE A 214 REMARK 465 ALA A 215 REMARK 465 SER A 266 REMARK 465 THR A 267 REMARK 465 ILE A 268 REMARK 465 SER A 269 REMARK 465 SER A 270 REMARK 465 VAL A 271 REMARK 465 ARG A 272 REMARK 465 ARG A 273 REMARK 465 GLU A 274 REMARK 465 ASP A 275 REMARK 465 SER A 276 REMARK 465 PRO A 277 REMARK 465 LEU A 278 REMARK 465 GLU A 279 REMARK 465 ASN A 280 REMARK 465 SER A 281 REMARK 465 GLN A 282 REMARK 465 ALA A 283 REMARK 465 GLU A 284 REMARK 465 LEU A 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 44 CD OE1 NE2 REMARK 470 ARG A 87 NE CZ NH1 NH2 REMARK 470 GLN A 151 CD OE1 NE2 REMARK 470 ASP A 165 CG OD1 OD2 REMARK 470 PHE A 208 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 265 CG OD1 OD2 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 GLU A 310 CG CD OE1 OE2 REMARK 470 LYS A 409 CG CD CE NZ REMARK 470 ILE A 412 CD1 REMARK 470 HIS A 413 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 414 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 357 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 99 -51.62 -122.48 REMARK 500 ASN A 205 169.85 173.97 REMARK 500 HIS A 376 12.85 -150.28 REMARK 500 ALA A 393 -121.14 58.99 REMARK 500 TRP A 437 21.81 -140.08 REMARK 500 SER A 483 150.00 -170.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391146 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 3HN7 A 1 505 UNP Q4FVQ2 Q4FVQ2_PSYA2 1 505 SEQADV 3HN7 MSE A -18 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 GLY A -17 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 SER A -16 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 ASP A -15 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 LYS A -14 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 ILE A -13 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 HIS A -12 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 HIS A -11 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 HIS A -10 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 HIS A -9 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 HIS A -8 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 HIS A -7 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 GLU A -6 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 ASN A -5 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 LEU A -4 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 TYR A -3 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 PHE A -2 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 GLN A -1 UNP Q4FVQ2 EXPRESSION TAG SEQADV 3HN7 GLY A 0 UNP Q4FVQ2 EXPRESSION TAG SEQRES 1 A 524 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 524 ASN LEU TYR PHE GLN GLY MSE HIS ILE HIS ILE LEU GLY SEQRES 3 A 524 ILE CYS GLY THR PHE MSE GLY SER LEU ALA LEU LEU ALA SEQRES 4 A 524 ARG ALA LEU GLY HIS THR VAL THR GLY SER ASP ALA ASN SEQRES 5 A 524 ILE TYR PRO PRO MSE SER THR GLN LEU GLU GLN ALA GLY SEQRES 6 A 524 VAL THR ILE GLU GLU GLY TYR LEU ILE ALA HIS LEU GLN SEQRES 7 A 524 PRO ALA PRO ASP LEU VAL VAL VAL GLY ASN ALA MSE LYS SEQRES 8 A 524 ARG GLY MSE ASP VAL ILE GLU TYR MSE LEU ASP THR GLY SEQRES 9 A 524 LEU ARG TYR THR SER GLY PRO GLN PHE LEU SER GLU GLN SEQRES 10 A 524 VAL LEU GLN SER ARG HIS VAL ILE ALA VAL ALA GLY THR SEQRES 11 A 524 HIS GLY LYS THR THR THR THR THR MSE LEU ALA TRP ILE SEQRES 12 A 524 LEU HIS TYR ALA GLY ILE ASP ALA GLY PHE LEU ILE GLY SEQRES 13 A 524 GLY VAL PRO LEU VAL ASN THR THR ASP THR ASN LEU GLN SEQRES 14 A 524 GLN VAL PHE ALA HIS SER SER TYR LEU GLY THR GLU LYS SEQRES 15 A 524 ASP ASP SER ASP ASN SER VAL ASN THR GLY TYR PHE VAL SEQRES 16 A 524 ILE GLU ALA ASP GLU TYR ASP SER ALA PHE PHE ASP LYS SEQRES 17 A 524 ARG SER LYS PHE VAL HIS TYR ARG PRO ARG THR ALA ILE SEQRES 18 A 524 LEU ASN ASN LEU GLU PHE ASP HIS ALA ASP ILE PHE ALA SEQRES 19 A 524 ASP LEU ASP ALA ILE GLN THR GLN PHE HIS HIS MSE VAL SEQRES 20 A 524 ARG MSE ILE PRO SER THR GLY LYS ILE ILE MSE PRO ALA SEQRES 21 A 524 ALA THR ILE SER LEU GLU ASP THR LEU ALA LYS GLY VAL SEQRES 22 A 524 TRP THR PRO ILE TRP ARG THR SER VAL ILE ASP SER THR SEQRES 23 A 524 ILE SER SER VAL ARG ARG GLU ASP SER PRO LEU GLU ASN SEQRES 24 A 524 SER GLN ALA GLU ASN SER SER ASP TRP GLN ALA GLU LEU SEQRES 25 A 524 ILE SER ALA ASP GLY SER GLN PHE THR VAL SER PHE ASN SEQRES 26 A 524 ASP ASN LYS GLU ALA THR ALA LEU VAL ASN TRP SER MSE SEQRES 27 A 524 SER GLY LEU HIS ASN VAL ASN ASN ALA LEU VAL ALA ILE SEQRES 28 A 524 ALA ALA ALA TYR ASN ILE GLY VAL SER VAL LYS THR ALA SEQRES 29 A 524 CYS ALA ALA LEU SER ALA PHE ALA GLY ILE LYS ARG ARG SEQRES 30 A 524 MSE GLU LEU ILE GLY ASP VAL ASN ASP ILE LEU VAL PHE SEQRES 31 A 524 ASP ASP PHE ALA HIS HIS PRO THR ALA ILE THR THR THR SEQRES 32 A 524 LEU ASP GLY ALA LYS LYS LYS LEU ALA ASP ARG ARG LEU SEQRES 33 A 524 TRP ALA ILE ILE GLU PRO ARG SER ASN THR MSE LYS MSE SEQRES 34 A 524 GLY ILE HIS GLN ASP SER LEU ALA GLN SER ALA THR LEU SEQRES 35 A 524 ALA ASP HIS THR LEU TRP TYR GLU PRO THR GLY LEU GLU SEQRES 36 A 524 TRP GLY LEU LYS GLU VAL ILE ASP ASN ALA THR ILE ALA SEQRES 37 A 524 ASN PRO SER ILE GLY SER GLN GLN VAL LEU SER SER VAL SEQRES 38 A 524 ASP ASP ILE ILE LYS HIS ILE CYS THR HIS ALA LYS ALA SEQRES 39 A 524 GLY ASP ALA ILE VAL ILE MSE SER ASN GLY GLY PHE GLU SEQRES 40 A 524 GLY ILE HIS GLN ARG LEU LEU THR ALA LEU GLY ASN ILE SEQRES 41 A 524 VAL ALA ILE LEU MODRES 3HN7 MSE A 1 MET SELENOMETHIONINE MODRES 3HN7 MSE A 13 MET SELENOMETHIONINE MODRES 3HN7 MSE A 38 MET SELENOMETHIONINE MODRES 3HN7 MSE A 71 MET SELENOMETHIONINE MODRES 3HN7 MSE A 75 MET SELENOMETHIONINE MODRES 3HN7 MSE A 81 MET SELENOMETHIONINE MODRES 3HN7 MSE A 120 MET SELENOMETHIONINE MODRES 3HN7 MSE A 227 MET SELENOMETHIONINE MODRES 3HN7 MSE A 230 MET SELENOMETHIONINE MODRES 3HN7 MSE A 239 MET SELENOMETHIONINE MODRES 3HN7 MSE A 319 MET SELENOMETHIONINE MODRES 3HN7 MSE A 359 MET SELENOMETHIONINE MODRES 3HN7 MSE A 408 MET SELENOMETHIONINE MODRES 3HN7 MSE A 410 MET SELENOMETHIONINE MODRES 3HN7 MSE A 482 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 13 8 HET MSE A 38 8 HET MSE A 71 8 HET MSE A 75 8 HET MSE A 81 8 HET MSE A 120 8 HET MSE A 227 8 HET MSE A 230 8 HET MSE A 239 8 HET MSE A 319 8 HET MSE A 359 8 HET MSE A 408 13 HET MSE A 410 8 HET MSE A 482 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 2 HOH *588(H2 O) HELIX 1 1 GLY A 10 LEU A 23 1 14 HELIX 2 2 PRO A 37 ALA A 45 1 9 HELIX 3 3 LEU A 54 GLN A 59 5 6 HELIX 4 4 MSE A 75 GLY A 85 1 11 HELIX 5 5 GLY A 91 VAL A 99 1 9 HELIX 6 6 LEU A 100 ARG A 103 5 4 HELIX 7 7 GLY A 113 ALA A 128 1 16 HELIX 8 8 ASP A 146 PHE A 153 1 8 HELIX 9 9 SER A 191 TYR A 196 1 6 HELIX 10 10 ASP A 216 ARG A 229 1 14 HELIX 11 11 THR A 243 LYS A 252 1 10 HELIX 12 12 GLY A 321 ILE A 338 1 18 HELIX 13 13 SER A 341 ALA A 351 1 11 HELIX 14 14 HIS A 377 ALA A 393 1 17 HELIX 15 15 ASP A 415 ALA A 421 1 7 HELIX 16 16 GLY A 438 ASN A 450 1 13 HELIX 17 17 PRO A 451 GLY A 454 5 4 HELIX 18 18 SER A 461 ALA A 473 1 13 HELIX 19 19 GLY A 486 GLU A 488 5 3 HELIX 20 20 GLY A 489 ILE A 501 1 13 SHEET 1 A 5 THR A 48 GLU A 51 0 SHEET 2 A 5 THR A 26 ASP A 31 1 N GLY A 29 O GLU A 50 SHEET 3 A 5 HIS A 2 LEU A 6 1 N ILE A 3 O THR A 26 SHEET 4 A 5 LEU A 64 VAL A 67 1 O LEU A 64 N HIS A 4 SHEET 5 A 5 TYR A 88 SER A 90 1 O THR A 89 N VAL A 67 SHEET 1 B10 SER A 157 TYR A 158 0 SHEET 2 B10 GLY A 133 LEU A 135 -1 N PHE A 134 O TYR A 158 SHEET 3 B10 TYR A 174 GLU A 178 1 O TYR A 174 N GLY A 133 SHEET 4 B10 HIS A 104 ALA A 109 1 N ILE A 106 O PHE A 175 SHEET 5 B10 THR A 200 LEU A 203 1 O ILE A 202 N ALA A 109 SHEET 6 B10 LYS A 236 PRO A 240 1 O ILE A 238 N ALA A 201 SHEET 7 B10 ILE A 258 ILE A 264 1 O TRP A 259 N ILE A 237 SHEET 8 B10 TRP A 289 SER A 295 1 O ALA A 291 N ILE A 264 SHEET 9 B10 GLN A 300 PHE A 305 -1 O THR A 302 N GLU A 292 SHEET 10 B10 ASN A 308 ASN A 316 -1 O VAL A 315 N PHE A 301 SHEET 1 C 6 GLU A 360 VAL A 365 0 SHEET 2 C 6 ILE A 368 ASP A 373 -1 O VAL A 370 N GLY A 363 SHEET 3 C 6 ALA A 478 SER A 483 1 O ILE A 479 N PHE A 371 SHEET 4 C 6 LEU A 397 GLU A 402 1 N TRP A 398 O VAL A 480 SHEET 5 C 6 HIS A 426 TYR A 430 1 O HIS A 426 N ALA A 399 SHEET 6 C 6 GLN A 456 LEU A 459 1 O LEU A 459 N TRP A 429 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N HIS A 2 1555 1555 1.32 LINK C PHE A 12 N MSE A 13 1555 1555 1.33 LINK C MSE A 13 N GLY A 14 1555 1555 1.34 LINK C PRO A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N SER A 39 1555 1555 1.33 LINK C ALA A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N LYS A 72 1555 1555 1.33 LINK C GLY A 74 N MSE A 75 1555 1555 1.33 LINK C MSE A 75 N ASP A 76 1555 1555 1.33 LINK C TYR A 80 N MSE A 81 1555 1555 1.32 LINK C MSE A 81 N LEU A 82 1555 1555 1.34 LINK C THR A 119 N MSE A 120 1555 1555 1.32 LINK C MSE A 120 N LEU A 121 1555 1555 1.33 LINK C HIS A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N VAL A 228 1555 1555 1.33 LINK C ARG A 229 N MSE A 230 1555 1555 1.33 LINK C MSE A 230 N ILE A 231 1555 1555 1.33 LINK C ILE A 238 N MSE A 239 1555 1555 1.31 LINK C MSE A 239 N PRO A 240 1555 1555 1.32 LINK C SER A 318 N MSE A 319 1555 1555 1.32 LINK C MSE A 319 N SER A 320 1555 1555 1.33 LINK C ARG A 358 N MSE A 359 1555 1555 1.33 LINK C MSE A 359 N GLU A 360 1555 1555 1.31 LINK C THR A 407 N MSE A 408 1555 1555 1.31 LINK C MSE A 408 N LYS A 409 1555 1555 1.34 LINK C LYS A 409 N MSE A 410 1555 1555 1.34 LINK C MSE A 410 N GLY A 411 1555 1555 1.33 LINK C ILE A 481 N MSE A 482 1555 1555 1.34 LINK C MSE A 482 N SER A 483 1555 1555 1.35 CISPEP 1 PRO A 36 PRO A 37 0 6.39 CISPEP 2 GLN A 59 PRO A 60 0 1.58 CRYST1 105.452 52.755 89.986 90.00 98.47 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009483 0.000000 0.001412 0.00000 SCALE2 0.000000 0.018956 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011235 0.00000