HEADER VIRAL PROTEIN 31-MAY-09 3HNQ TITLE CRYSTAL STRUCTURE OF VIRULENCE PROTEIN STM3117 FROM TITLE 2 SALMONELLA TYPHIMURIUM. NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET ID STR274 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRULENCE PROTEIN STM3117; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SOURCE 3 SEROVAR TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 GENE: STM3117; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS VIRULENCE PROTEIN STM3117, SALMONELLA TYPHIMURIUM, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, VIRULENCE, KEYWDS 4 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SEETHARAMAN,M.SU,S.SAHDEV,H.JANJUA,R.XIAO,C.CICCOSANTI, AUTHOR 2 E.L.FOOTE,T.B.ACTON,B.ROST,G.T.MONTELIONE,L.TONG,J.F.HUNT, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 1 30-JUN-09 3HNQ 0 JRNL AUTH J.SEETHARAMAN,M.SU,S.SAHDEV,H.JANJUA,R.XIAO, JRNL AUTH 2 C.CICCOSANTI,E.L.FOOTE,T.B.ACTON,B.ROST, JRNL AUTH 3 G.T.MONTELIONE,L.TONG,J.F.HUNT JRNL TITL CRYSTAL STRUCTURE OF VIRULENCE PROTEIN STM3117 FROM JRNL TITL 2 SALMONELLA TYPHIMURIUM. NORTHEAST STRUCTURAL JRNL TITL 3 GENOMICS CONSORTIUM TARGET ID STR274 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 72554.970 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 53582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2658 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7029 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 351 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.64000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.75000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.37 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 47.32 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3HNQ COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB053359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62170 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 1000, 100MM NA3CITRATE, REMARK 280 100MM K2HPO4, 20% GLYCEROL, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 67.31150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LEU A 2 REMARK 465 PHE A 3 REMARK 465 PHE A 4 REMARK 465 ASN A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 LYS A 10 REMARK 465 TYR A 11 REMARK 465 LYS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 GLU A 15 REMARK 465 SER A 16 REMARK 465 ILE A 17 REMARK 465 GLN A 18 REMARK 465 MSE B 1 REMARK 465 LEU B 2 REMARK 465 PHE B 3 REMARK 465 PHE B 4 REMARK 465 ASN B 5 REMARK 465 VAL B 6 REMARK 465 ALA B 7 REMARK 465 SER B 8 REMARK 465 LEU B 9 REMARK 465 LYS B 10 REMARK 465 TYR B 11 REMARK 465 LYS B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 GLU B 15 REMARK 465 SER B 16 REMARK 465 ILE B 17 REMARK 465 GLN B 18 REMARK 465 MSE C 1 REMARK 465 LEU C 2 REMARK 465 PHE C 3 REMARK 465 PHE C 4 REMARK 465 ASN C 5 REMARK 465 VAL C 6 REMARK 465 ALA C 7 REMARK 465 SER C 8 REMARK 465 LEU C 9 REMARK 465 LYS C 10 REMARK 465 TYR C 11 REMARK 465 LYS C 12 REMARK 465 HIS C 13 REMARK 465 HIS C 14 REMARK 465 GLU C 15 REMARK 465 SER C 16 REMARK 465 ILE C 17 REMARK 465 GLN C 18 REMARK 465 MSE D 1 REMARK 465 LEU D 2 REMARK 465 PHE D 3 REMARK 465 PHE D 4 REMARK 465 ASN D 5 REMARK 465 VAL D 6 REMARK 465 ALA D 7 REMARK 465 SER D 8 REMARK 465 LEU D 9 REMARK 465 LYS D 10 REMARK 465 TYR D 11 REMARK 465 LYS D 12 REMARK 465 HIS D 13 REMARK 465 HIS D 14 REMARK 465 GLU D 15 REMARK 465 SER D 16 REMARK 465 ILE D 17 REMARK 465 GLN D 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 PHE B 75 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA B 107 O GLN D 54 2556 2.05 REMARK 500 OE1 GLU B 43 NH1 ARG D 56 2556 2.14 REMARK 500 OE2 GLU B 43 NH2 ARG D 56 2556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR D 51 C THR D 51 O -0.179 REMARK 500 LYS D 57 CG LYS D 57 CD -0.214 REMARK 500 LYS D 57 CE LYS D 57 NZ -0.186 REMARK 500 LYS D 57 C LYS D 57 O -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 54 -48.13 70.79 REMARK 500 VAL B 44 -70.33 -83.85 REMARK 500 GLN B 54 -45.27 54.37 REMARK 500 GLN C 54 -35.65 67.16 REMARK 500 ASN C 55 16.43 -151.38 REMARK 500 THR C 122 31.56 -141.55 REMARK 500 LYS D 53 12.39 49.46 REMARK 500 GLN D 54 -9.21 69.60 REMARK 500 ASN D 55 48.94 -162.65 REMARK 500 PHE D 75 96.25 87.80 REMARK 500 PRO D 77 91.91 -59.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU D 74 24.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: STR274 RELATED DB: TARGETDB DBREF 3HNQ A 1 144 UNP Q8ZM36 VIR17_SALTY 1 144 DBREF 3HNQ B 1 144 UNP Q8ZM36 VIR17_SALTY 1 144 DBREF 3HNQ C 1 144 UNP Q8ZM36 VIR17_SALTY 1 144 DBREF 3HNQ D 1 144 UNP Q8ZM36 VIR17_SALTY 1 144 SEQRES 1 A 144 MSE LEU PHE PHE ASN VAL ALA SER LEU LYS TYR LYS HIS SEQRES 2 A 144 HIS GLU SER ILE GLN MSE ILE ILE ASP ARG ILE ASP HIS SEQRES 3 A 144 LEU VAL LEU THR VAL SER ASP ILE SER THR THR ILE ARG SEQRES 4 A 144 PHE TYR GLU GLU VAL LEU GLY PHE SER ALA VAL THR PHE SEQRES 5 A 144 LYS GLN ASN ARG LYS ALA LEU ILE PHE GLY ALA GLN LYS SEQRES 6 A 144 ILE ASN LEU HIS GLN GLN GLU MSE GLU PHE GLU PRO LYS SEQRES 7 A 144 ALA SER ARG PRO THR PRO GLY SER ALA ASP LEU CYS PHE SEQRES 8 A 144 ILE THR SER THR PRO ILE ASN ASP VAL VAL SER GLU ILE SEQRES 9 A 144 LEU GLN ALA GLY ILE SER ILE VAL GLU GLY PRO VAL GLU SEQRES 10 A 144 ARG THR GLY ALA THR GLY GLU ILE MSE SER ILE TYR ILE SEQRES 11 A 144 ARG ASP PRO ASP GLY ASN LEU ILE GLU ILE SER GLN TYR SEQRES 12 A 144 VAL SEQRES 1 B 144 MSE LEU PHE PHE ASN VAL ALA SER LEU LYS TYR LYS HIS SEQRES 2 B 144 HIS GLU SER ILE GLN MSE ILE ILE ASP ARG ILE ASP HIS SEQRES 3 B 144 LEU VAL LEU THR VAL SER ASP ILE SER THR THR ILE ARG SEQRES 4 B 144 PHE TYR GLU GLU VAL LEU GLY PHE SER ALA VAL THR PHE SEQRES 5 B 144 LYS GLN ASN ARG LYS ALA LEU ILE PHE GLY ALA GLN LYS SEQRES 6 B 144 ILE ASN LEU HIS GLN GLN GLU MSE GLU PHE GLU PRO LYS SEQRES 7 B 144 ALA SER ARG PRO THR PRO GLY SER ALA ASP LEU CYS PHE SEQRES 8 B 144 ILE THR SER THR PRO ILE ASN ASP VAL VAL SER GLU ILE SEQRES 9 B 144 LEU GLN ALA GLY ILE SER ILE VAL GLU GLY PRO VAL GLU SEQRES 10 B 144 ARG THR GLY ALA THR GLY GLU ILE MSE SER ILE TYR ILE SEQRES 11 B 144 ARG ASP PRO ASP GLY ASN LEU ILE GLU ILE SER GLN TYR SEQRES 12 B 144 VAL SEQRES 1 C 144 MSE LEU PHE PHE ASN VAL ALA SER LEU LYS TYR LYS HIS SEQRES 2 C 144 HIS GLU SER ILE GLN MSE ILE ILE ASP ARG ILE ASP HIS SEQRES 3 C 144 LEU VAL LEU THR VAL SER ASP ILE SER THR THR ILE ARG SEQRES 4 C 144 PHE TYR GLU GLU VAL LEU GLY PHE SER ALA VAL THR PHE SEQRES 5 C 144 LYS GLN ASN ARG LYS ALA LEU ILE PHE GLY ALA GLN LYS SEQRES 6 C 144 ILE ASN LEU HIS GLN GLN GLU MSE GLU PHE GLU PRO LYS SEQRES 7 C 144 ALA SER ARG PRO THR PRO GLY SER ALA ASP LEU CYS PHE SEQRES 8 C 144 ILE THR SER THR PRO ILE ASN ASP VAL VAL SER GLU ILE SEQRES 9 C 144 LEU GLN ALA GLY ILE SER ILE VAL GLU GLY PRO VAL GLU SEQRES 10 C 144 ARG THR GLY ALA THR GLY GLU ILE MSE SER ILE TYR ILE SEQRES 11 C 144 ARG ASP PRO ASP GLY ASN LEU ILE GLU ILE SER GLN TYR SEQRES 12 C 144 VAL SEQRES 1 D 144 MSE LEU PHE PHE ASN VAL ALA SER LEU LYS TYR LYS HIS SEQRES 2 D 144 HIS GLU SER ILE GLN MSE ILE ILE ASP ARG ILE ASP HIS SEQRES 3 D 144 LEU VAL LEU THR VAL SER ASP ILE SER THR THR ILE ARG SEQRES 4 D 144 PHE TYR GLU GLU VAL LEU GLY PHE SER ALA VAL THR PHE SEQRES 5 D 144 LYS GLN ASN ARG LYS ALA LEU ILE PHE GLY ALA GLN LYS SEQRES 6 D 144 ILE ASN LEU HIS GLN GLN GLU MSE GLU PHE GLU PRO LYS SEQRES 7 D 144 ALA SER ARG PRO THR PRO GLY SER ALA ASP LEU CYS PHE SEQRES 8 D 144 ILE THR SER THR PRO ILE ASN ASP VAL VAL SER GLU ILE SEQRES 9 D 144 LEU GLN ALA GLY ILE SER ILE VAL GLU GLY PRO VAL GLU SEQRES 10 D 144 ARG THR GLY ALA THR GLY GLU ILE MSE SER ILE TYR ILE SEQRES 11 D 144 ARG ASP PRO ASP GLY ASN LEU ILE GLU ILE SER GLN TYR SEQRES 12 D 144 VAL MODRES 3HNQ MSE A 19 MET SELENOMETHIONINE MODRES 3HNQ MSE A 73 MET SELENOMETHIONINE MODRES 3HNQ MSE A 126 MET SELENOMETHIONINE MODRES 3HNQ MSE B 19 MET SELENOMETHIONINE MODRES 3HNQ MSE B 73 MET SELENOMETHIONINE MODRES 3HNQ MSE B 126 MET SELENOMETHIONINE MODRES 3HNQ MSE C 19 MET SELENOMETHIONINE MODRES 3HNQ MSE C 73 MET SELENOMETHIONINE MODRES 3HNQ MSE C 126 MET SELENOMETHIONINE MODRES 3HNQ MSE D 19 MET SELENOMETHIONINE MODRES 3HNQ MSE D 73 MET SELENOMETHIONINE MODRES 3HNQ MSE D 126 MET SELENOMETHIONINE HET MSE A 19 8 HET MSE A 73 8 HET MSE A 126 8 HET MSE B 19 8 HET MSE B 73 8 HET MSE B 126 8 HET MSE C 19 8 HET MSE C 73 8 HET MSE C 126 8 HET MSE D 19 8 HET MSE D 73 8 HET MSE D 126 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 HOH *219(H2 O) HELIX 1 1 ASP A 33 VAL A 44 1 12 HELIX 2 2 PRO A 96 ALA A 107 1 12 HELIX 3 3 ASP B 33 VAL B 44 1 12 HELIX 4 4 PRO B 96 ALA B 107 1 12 HELIX 5 5 ASP C 33 VAL C 44 1 12 HELIX 6 6 PRO C 96 ALA C 107 1 12 HELIX 7 7 ASP D 33 VAL D 44 1 12 HELIX 8 8 PRO D 96 ALA D 107 1 12 SHEET 1 A 8 SER A 48 PHE A 52 0 SHEET 2 A 8 ARG A 56 PHE A 61 -1 O ILE A 60 N SER A 48 SHEET 3 A 8 GLN A 64 GLN A 70 -1 O LEU A 68 N LYS A 57 SHEET 4 A 8 ILE A 21 VAL A 31 1 N VAL A 31 O HIS A 69 SHEET 5 A 8 ASP B 88 THR B 93 -1 O ILE B 92 N ASP A 22 SHEET 6 A 8 LEU B 137 TYR B 143 1 O GLU B 139 N PHE B 91 SHEET 7 A 8 GLU B 124 ARG B 131 -1 N ILE B 130 O ILE B 138 SHEET 8 A 8 GLU B 113 THR B 119 -1 N GLU B 113 O TYR B 129 SHEET 1 B 8 GLU A 113 THR A 119 0 SHEET 2 B 8 GLU A 124 ARG A 131 -1 O ILE A 125 N ARG A 118 SHEET 3 B 8 LEU A 137 TYR A 143 -1 O ILE A 138 N ILE A 130 SHEET 4 B 8 ASP A 88 THR A 93 1 N PHE A 91 O SER A 141 SHEET 5 B 8 ILE B 21 VAL B 31 -1 O ARG B 23 N ILE A 92 SHEET 6 B 8 GLN B 64 GLN B 70 1 O ASN B 67 N LEU B 27 SHEET 7 B 8 ARG B 56 PHE B 61 -1 N PHE B 61 O GLN B 64 SHEET 8 B 8 SER B 48 PHE B 52 -1 N SER B 48 O ILE B 60 SHEET 1 C 8 SER C 48 PHE C 52 0 SHEET 2 C 8 ARG C 56 PHE C 61 -1 O ILE C 60 N SER C 48 SHEET 3 C 8 GLN C 64 GLN C 70 -1 O LEU C 68 N LYS C 57 SHEET 4 C 8 ILE C 21 VAL C 31 1 N VAL C 31 O HIS C 69 SHEET 5 C 8 ASP D 88 THR D 93 -1 O ILE D 92 N ARG C 23 SHEET 6 C 8 LEU D 137 TYR D 143 1 O GLU D 139 N LEU D 89 SHEET 7 C 8 GLY D 123 ARG D 131 -1 N ILE D 130 O ILE D 138 SHEET 8 C 8 GLU D 113 GLY D 120 -1 N GLY D 120 O GLY D 123 SHEET 1 D 8 GLU C 113 GLY C 120 0 SHEET 2 D 8 GLY C 123 ARG C 131 -1 O GLY C 123 N GLY C 120 SHEET 3 D 8 LEU C 137 TYR C 143 -1 O ILE C 138 N ILE C 130 SHEET 4 D 8 ASP C 88 THR C 93 1 N LEU C 89 O GLU C 139 SHEET 5 D 8 ILE D 21 VAL D 31 -1 O ASP D 22 N ILE C 92 SHEET 6 D 8 GLN D 64 GLN D 70 1 O ASN D 67 N LEU D 29 SHEET 7 D 8 ARG D 56 PHE D 61 -1 N LEU D 59 O ILE D 66 SHEET 8 D 8 SER D 48 PHE D 52 -1 N SER D 48 O ILE D 60 LINK C MSE A 19 N ILE A 20 1555 1555 1.33 LINK C GLU A 72 N MSE A 73 1555 1555 1.33 LINK C MSE A 73 N GLU A 74 1555 1555 1.33 LINK C ILE A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N SER A 127 1555 1555 1.33 LINK C MSE B 19 N ILE B 20 1555 1555 1.33 LINK C GLU B 72 N MSE B 73 1555 1555 1.33 LINK C ILE B 125 N MSE B 126 1555 1555 1.33 LINK C MSE B 126 N SER B 127 1555 1555 1.33 LINK C MSE C 19 N ILE C 20 1555 1555 1.33 LINK C GLU C 72 N MSE C 73 1555 1555 1.33 LINK C MSE C 73 N GLU C 74 1555 1555 1.32 LINK C ILE C 125 N MSE C 126 1555 1555 1.33 LINK C MSE C 126 N SER C 127 1555 1555 1.33 LINK C MSE D 19 N ILE D 20 1555 1555 1.33 LINK C GLU D 72 N MSE D 73 1555 1555 1.33 LINK C MSE D 73 N GLU D 74 1555 1555 1.33 LINK C ILE D 125 N MSE D 126 1555 1555 1.33 LINK C MSE D 126 N SER D 127 1555 1555 1.33 LINK C MSE B 73 N GLU B 74 1555 1555 1.33 CISPEP 1 GLU A 76 PRO A 77 0 -0.45 CISPEP 2 GLY B 114 PRO B 115 0 0.33 CISPEP 3 GLU C 76 PRO C 77 0 0.22 CISPEP 4 GLY C 114 PRO C 115 0 -0.74 CISPEP 5 GLY D 114 PRO D 115 0 -1.55 CRYST1 39.950 134.623 51.356 90.00 112.71 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025031 0.000000 0.010477 0.00000 SCALE2 0.000000 0.007428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021109 0.00000 HETATM 1 N MSE A 19 8.909 8.010 28.202 1.00 34.50 N HETATM 2 CA MSE A 19 9.038 6.956 27.157 1.00 33.99 C HETATM 3 C MSE A 19 9.989 7.457 26.078 1.00 33.03 C HETATM 4 O MSE A 19 9.751 8.500 25.473 1.00 33.45 O HETATM 5 CB MSE A 19 7.672 6.672 26.525 1.00 32.72 C HETATM 6 CG MSE A 19 7.588 5.359 25.771 1.00 33.80 C HETATM 7 SE MSE A 19 6.241 5.353 24.586 1.00 29.83 SE HETATM 8 CE MSE A 19 4.826 5.473 25.653 1.00 34.09 C