data_3HOI # _entry.id 3HOI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HOI pdb_00003hoi 10.2210/pdb3hoi/pdb RCSB RCSB053386 ? ? WWPDB D_1000053386 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 396586 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3HOI _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-06-02 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of FMN-dependent nitroreductase BF3017 from Bacteroides fragilis NCTC 9343 (YP_212631.1) from Bacteroides fragilis NCTC 9343 at 1.55 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3HOI _cell.length_a 48.873 _cell.length_b 48.873 _cell.length_c 295.194 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HOI _symmetry.Int_Tables_number 178 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'FMN-dependent nitroreductase BF3017' 21329.086 1 ? ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 non-polymer syn 'CITRATE ANION' 189.100 1 ? ? ? ? 6 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 7 water nat water 18.015 207 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GAERTIQLPKPD(MSE)NRAGLL(MSE)KALSERHSTREYASKALSNTDLSDLLWAANGINRSSEGKRTAPSA(MSE)NR QDIDIYVVLPQGTYLYDAKGHKLNLISEGDHRSAVAGGQAFVNNAPVSLVLVSDLSKLGDAKSNHVQL(MSE)GA(MSE) DAGIVSQNISLFCSAARLATVPRAS(MSE)DLVRLKAALKLKDTQ(MSE)P(MSE)(MSE)NHPVGYFK ; _entity_poly.pdbx_seq_one_letter_code_can ;GAERTIQLPKPDMNRAGLLMKALSERHSTREYASKALSNTDLSDLLWAANGINRSSEGKRTAPSAMNRQDIDIYVVLPQG TYLYDAKGHKLNLISEGDHRSAVAGGQAFVNNAPVSLVLVSDLSKLGDAKSNHVQLMGAMDAGIVSQNISLFCSAARLAT VPRASMDLVRLKAALKLKDTQMPMMNHPVGYFK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 396586 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 GLU n 1 4 ARG n 1 5 THR n 1 6 ILE n 1 7 GLN n 1 8 LEU n 1 9 PRO n 1 10 LYS n 1 11 PRO n 1 12 ASP n 1 13 MSE n 1 14 ASN n 1 15 ARG n 1 16 ALA n 1 17 GLY n 1 18 LEU n 1 19 LEU n 1 20 MSE n 1 21 LYS n 1 22 ALA n 1 23 LEU n 1 24 SER n 1 25 GLU n 1 26 ARG n 1 27 HIS n 1 28 SER n 1 29 THR n 1 30 ARG n 1 31 GLU n 1 32 TYR n 1 33 ALA n 1 34 SER n 1 35 LYS n 1 36 ALA n 1 37 LEU n 1 38 SER n 1 39 ASN n 1 40 THR n 1 41 ASP n 1 42 LEU n 1 43 SER n 1 44 ASP n 1 45 LEU n 1 46 LEU n 1 47 TRP n 1 48 ALA n 1 49 ALA n 1 50 ASN n 1 51 GLY n 1 52 ILE n 1 53 ASN n 1 54 ARG n 1 55 SER n 1 56 SER n 1 57 GLU n 1 58 GLY n 1 59 LYS n 1 60 ARG n 1 61 THR n 1 62 ALA n 1 63 PRO n 1 64 SER n 1 65 ALA n 1 66 MSE n 1 67 ASN n 1 68 ARG n 1 69 GLN n 1 70 ASP n 1 71 ILE n 1 72 ASP n 1 73 ILE n 1 74 TYR n 1 75 VAL n 1 76 VAL n 1 77 LEU n 1 78 PRO n 1 79 GLN n 1 80 GLY n 1 81 THR n 1 82 TYR n 1 83 LEU n 1 84 TYR n 1 85 ASP n 1 86 ALA n 1 87 LYS n 1 88 GLY n 1 89 HIS n 1 90 LYS n 1 91 LEU n 1 92 ASN n 1 93 LEU n 1 94 ILE n 1 95 SER n 1 96 GLU n 1 97 GLY n 1 98 ASP n 1 99 HIS n 1 100 ARG n 1 101 SER n 1 102 ALA n 1 103 VAL n 1 104 ALA n 1 105 GLY n 1 106 GLY n 1 107 GLN n 1 108 ALA n 1 109 PHE n 1 110 VAL n 1 111 ASN n 1 112 ASN n 1 113 ALA n 1 114 PRO n 1 115 VAL n 1 116 SER n 1 117 LEU n 1 118 VAL n 1 119 LEU n 1 120 VAL n 1 121 SER n 1 122 ASP n 1 123 LEU n 1 124 SER n 1 125 LYS n 1 126 LEU n 1 127 GLY n 1 128 ASP n 1 129 ALA n 1 130 LYS n 1 131 SER n 1 132 ASN n 1 133 HIS n 1 134 VAL n 1 135 GLN n 1 136 LEU n 1 137 MSE n 1 138 GLY n 1 139 ALA n 1 140 MSE n 1 141 ASP n 1 142 ALA n 1 143 GLY n 1 144 ILE n 1 145 VAL n 1 146 SER n 1 147 GLN n 1 148 ASN n 1 149 ILE n 1 150 SER n 1 151 LEU n 1 152 PHE n 1 153 CYS n 1 154 SER n 1 155 ALA n 1 156 ALA n 1 157 ARG n 1 158 LEU n 1 159 ALA n 1 160 THR n 1 161 VAL n 1 162 PRO n 1 163 ARG n 1 164 ALA n 1 165 SER n 1 166 MSE n 1 167 ASP n 1 168 LEU n 1 169 VAL n 1 170 ARG n 1 171 LEU n 1 172 LYS n 1 173 ALA n 1 174 ALA n 1 175 LEU n 1 176 LYS n 1 177 LEU n 1 178 LYS n 1 179 ASP n 1 180 THR n 1 181 GLN n 1 182 MSE n 1 183 PRO n 1 184 MSE n 1 185 MSE n 1 186 ASN n 1 187 HIS n 1 188 PRO n 1 189 VAL n 1 190 GLY n 1 191 TYR n 1 192 PHE n 1 193 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BF3017, YP_212631.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis NCTC 9343' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LB10_BACFN _struct_ref.pdbx_db_accession Q5LB10 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AERTIQLPKPDMNRAGLLMKALSERHSTREYASKALSNTDLSDLLWAANGINRSSEGKRTAPSAMNRQDIDIYVVLPQGT YLYDAKGHKLNLISEGDHRSAVAGGQAFVNNAPVSLVLVSDLSKLGDAKSNHVQLMGAMDAGIVSQNISLFCSAARLATV PRASMDLVRLKAALKLKDTQMPMMNHPVGYFK ; _struct_ref.pdbx_align_begin 20 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HOI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 193 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5LB10 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 211 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 211 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3HOI _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q5LB10 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FLC non-polymer . 'CITRATE ANION' ? 'C6 H5 O7 -3' 189.100 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3HOI # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M Li2SO4, 20.0000% PEG-1000, 0.1M Phosphate Citrate pH 4.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-03-18 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97929 1.0 3 0.97905 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97929,0.97905 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3HOI _reflns.d_resolution_high 1.55 _reflns.d_resolution_low 29.514 _reflns.number_obs 31895 _reflns.pdbx_Rmerge_I_obs 0.080 _reflns.percent_possible_obs 99.500 _reflns.B_iso_Wilson_estimate 20.360 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.72 _reflns.pdbx_redundancy 13.59 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.55 1.61 45676 ? ? 0.016 1.6 ? ? ? ? ? 98.60 1 1 1.61 1.67 40161 ? ? 0.016 2.2 ? ? ? ? ? 99.30 2 1 1.67 1.75 45319 ? ? 0.016 3.0 ? ? ? ? ? 99.20 3 1 1.75 1.84 41906 ? ? 0.016 4.5 ? ? ? ? ? 99.40 4 1 1.84 1.95 41720 ? ? 0.016 6.9 ? ? ? ? ? 99.40 5 1 1.95 2.10 43643 ? ? 0.016 10.9 ? ? ? ? ? 99.70 6 1 2.10 2.31 43972 ? ? 0.016 16.5 ? ? ? ? ? 99.80 7 1 2.31 2.65 44744 ? ? 0.016 23.2 ? ? ? ? ? 99.90 8 1 2.65 3.33 43272 ? ? 0.016 35.7 ? ? ? ? ? 99.90 9 1 3.33 29.5 42895 ? ? 0.016 51.5 ? ? ? ? ? 99.60 10 1 # _refine.entry_id 3HOI _refine.ls_d_res_high 1.550 _refine.ls_d_res_low 29.514 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.520 _refine.ls_number_reflns_obs 31746 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. FLAVIN MONONUCLEOTIDE COFACTOR (FMN) AND AN UNKNOWN LIGAND (UNL) ARE MODELED INTO THE PUTATIVE ACTIVE SITE. DURING THE REFINEMENT, THE FMN RESTRAINTS DICTIONARY WAS MODIFIED TO ALLOW BENDING OF THE ISOALLOXAZINE RING ALONG THE N5-N10 VIRTUAL AXIS RESULTING IN AN IMPROVED FIT BETWEEN THE FMN COORDINATES AND ELECTRON DENSITY. 5. SULFATE IONS (SO4), CITRATE ANION (FLC) FROM CRYSTALLIZATION SOLUTION, AND PEG1000 OR PEG200 FRAGMENTS (PEG) FROM EITHER CRYSTALLIZATION OR CRYO SOLUTION ARE MODELED. 6. UNEXPLAINED ELECTRON DENSITY NEAR RESIDUE 185 WAS NOT MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.162 _refine.ls_R_factor_R_work 0.161 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.187 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1599 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.523 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.250 _refine.aniso_B[2][2] 1.250 _refine.aniso_B[3][3] -1.880 _refine.aniso_B[1][2] 0.630 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.965 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.074 _refine.pdbx_overall_ESU_R_Free 0.074 _refine.overall_SU_ML 0.056 _refine.overall_SU_B 3.148 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 84.00 _refine.B_iso_min 10.95 _refine.occupancy_max 1.00 _refine.occupancy_min 0.22 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1451 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 65 _refine_hist.number_atoms_solvent 207 _refine_hist.number_atoms_total 1723 _refine_hist.d_res_high 1.550 _refine_hist.d_res_low 29.514 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1709 0.018 0.021 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1136 0.002 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2335 1.705 2.016 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2796 1.027 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 227 5.761 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 64 36.339 24.219 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 301 15.697 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 13 16.569 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 257 0.105 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1953 0.008 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 313 0.003 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 405 0.239 0.200 ? ? r_nbd_other 'X-RAY DIFFRACTION' 1221 0.204 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 832 0.180 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 920 0.090 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 145 0.170 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 19 0.194 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 71 0.235 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 19 0.208 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1159 2.187 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 432 0.494 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1745 2.963 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 695 5.859 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 590 7.933 11.000 ? ? # _refine_ls_shell.d_res_high 1.550 _refine_ls_shell.d_res_low 1.590 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.610 _refine_ls_shell.number_reflns_R_work 2160 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.251 _refine_ls_shell.R_factor_R_free 0.286 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 110 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2270 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3HOI _struct.title ;Crystal structure of FMN-dependent nitroreductase BF3017 from Bacteroides fragilis NCTC 9343 (YP_212631.1) from Bacteroides fragilis NCTC 9343 at 1.55 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_212631.1, FMN-dependent nitroreductase BF3017 from Bacteroides fragilis NCTC 9343, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, OXIDOREDUCTASE ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.entry_id 3HOI # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 7 ? # _struct_biol.id 1 _struct_biol.details ;ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 18 ? ARG A 26 ? LEU A 36 ARG A 44 1 ? 9 HELX_P HELX_P2 2 SER A 38 ? GLY A 51 ? SER A 56 GLY A 69 1 ? 14 HELX_P HELX_P3 3 SER A 64 ? ARG A 68 ? SER A 82 ARG A 86 5 ? 5 HELX_P HELX_P4 4 HIS A 99 ? GLY A 105 ? HIS A 117 GLY A 123 1 ? 7 HELX_P HELX_P5 5 GLN A 107 ? ALA A 113 ? GLN A 125 ALA A 131 5 ? 7 HELX_P HELX_P6 6 SER A 124 ? LEU A 126 ? SER A 142 LEU A 144 5 ? 3 HELX_P HELX_P7 7 SER A 131 ? ARG A 157 ? SER A 149 ARG A 175 1 ? 27 HELX_P HELX_P8 8 ASP A 167 ? LYS A 176 ? ASP A 185 LYS A 194 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 12 C A ? ? 1_555 A MSE 13 N A ? A ASP 30 A MSE 31 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A ASP 12 C B ? ? 1_555 A MSE 13 N B ? A ASP 30 A MSE 31 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale3 covale both ? A MSE 13 C A ? ? 1_555 A ASN 14 N A ? A MSE 31 A ASN 32 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale4 covale both ? A MSE 13 C B ? ? 1_555 A ASN 14 N B ? A MSE 31 A ASN 32 1_555 ? ? ? ? ? ? ? 1.304 ? ? covale5 covale both ? A LEU 19 C ? ? ? 1_555 A MSE 20 N ? ? A LEU 37 A MSE 38 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale6 covale both ? A MSE 20 C ? ? ? 1_555 A LYS 21 N ? ? A MSE 38 A LYS 39 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale7 covale both ? A ALA 65 C ? ? ? 1_555 A MSE 66 N A ? A ALA 83 A MSE 84 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale8 covale both ? A ALA 65 C ? ? ? 1_555 A MSE 66 N B ? A ALA 83 A MSE 84 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? A MSE 66 C A ? ? 1_555 A ASN 67 N ? ? A MSE 84 A ASN 85 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale10 covale both ? A MSE 66 C B ? ? 1_555 A ASN 67 N ? ? A MSE 84 A ASN 85 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale11 covale both ? A LEU 136 C A ? ? 1_555 A MSE 137 N A ? A LEU 154 A MSE 155 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale12 covale both ? A LEU 136 C B ? ? 1_555 A MSE 137 N B ? A LEU 154 A MSE 155 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale13 covale both ? A MSE 137 C A ? ? 1_555 A GLY 138 N ? ? A MSE 155 A GLY 156 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale14 covale both ? A MSE 137 C B ? ? 1_555 A GLY 138 N ? ? A MSE 155 A GLY 156 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale15 covale both ? A ALA 139 C ? ? ? 1_555 A MSE 140 N ? ? A ALA 157 A MSE 158 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale16 covale both ? A MSE 140 C ? ? ? 1_555 A ASP 141 N ? ? A MSE 158 A ASP 159 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale17 covale both ? A SER 165 C ? ? ? 1_555 A MSE 166 N ? ? A SER 183 A MSE 184 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale18 covale both ? A MSE 166 C ? ? ? 1_555 A ASP 167 N ? ? A MSE 184 A ASP 185 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale19 covale both ? A GLN 181 C ? ? ? 1_555 A MSE 182 N ? ? A GLN 199 A MSE 200 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale20 covale both ? A MSE 182 C ? ? ? 1_555 A PRO 183 N ? ? A MSE 200 A PRO 201 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale21 covale both ? A PRO 183 C ? ? ? 1_555 A MSE 184 N ? ? A PRO 201 A MSE 202 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale22 covale both ? A MSE 184 C ? ? ? 1_555 A MSE 185 N A ? A MSE 202 A MSE 203 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale23 covale both ? A MSE 184 C ? ? ? 1_555 A MSE 185 N B ? A MSE 202 A MSE 203 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale24 covale both ? A MSE 185 C A ? ? 1_555 A ASN 186 N ? ? A MSE 203 A ASN 204 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale25 covale both ? A MSE 185 C B ? ? 1_555 A ASN 186 N ? ? A MSE 203 A ASN 204 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 5 ? GLN A 7 ? THR A 23 GLN A 25 A 2 LYS A 90 ? GLU A 96 ? LYS A 108 GLU A 114 A 3 GLY A 80 ? ASP A 85 ? GLY A 98 ASP A 103 A 4 ILE A 71 ? LEU A 77 ? ILE A 89 LEU A 95 A 5 VAL A 115 ? ASP A 122 ? VAL A 133 ASP A 140 A 6 GLN A 181 ? TYR A 191 ? GLN A 199 TYR A 209 A 7 LEU A 158 ? THR A 160 ? LEU A 176 THR A 178 B 1 ILE A 52 ? ARG A 54 ? ILE A 70 ARG A 72 B 2 LYS A 59 ? ARG A 60 ? LYS A 77 ARG A 78 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 6 ? N ILE A 24 O LEU A 91 ? O LEU A 109 A 2 3 O ILE A 94 ? O ILE A 112 N THR A 81 ? N THR A 99 A 3 4 O TYR A 82 ? O TYR A 100 N VAL A 75 ? N VAL A 93 A 4 5 N VAL A 76 ? N VAL A 94 O SER A 116 ? O SER A 134 A 5 6 N LEU A 119 ? N LEU A 137 O MSE A 184 ? O MSE A 202 A 6 7 O GLY A 190 ? O GLY A 208 N ALA A 159 ? N ALA A 177 B 1 2 N ASN A 53 ? N ASN A 71 O LYS A 59 ? O LYS A 77 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMN 300 ? 22 'BINDING SITE FOR RESIDUE FMN A 300' AC2 Software A UNL 1 ? 3 'BINDING SITE FOR RESIDUE UNL A 1' AC3 Software A SO4 2 ? 9 'BINDING SITE FOR RESIDUE SO4 A 2' AC4 Software A SO4 3 ? 3 'BINDING SITE FOR RESIDUE SO4 A 3' AC5 Software A FLC 4 ? 8 'BINDING SITE FOR RESIDUE FLC A 4' AC6 Software A PEG 5 ? 5 'BINDING SITE FOR RESIDUE PEG A 5' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 22 UNL C . ? UNL A 1 . ? 1_555 ? 2 AC1 22 ARG A 26 ? ARG A 44 . ? 1_555 ? 3 AC1 22 HIS A 27 ? HIS A 45 . ? 1_555 ? 4 AC1 22 SER A 28 ? SER A 46 . ? 1_555 ? 5 AC1 22 ARG A 30 ? ARG A 48 . ? 1_555 ? 6 AC1 22 ARG A 54 ? ARG A 72 . ? 10_554 ? 7 AC1 22 PRO A 63 ? PRO A 81 . ? 10_554 ? 8 AC1 22 SER A 64 ? SER A 82 . ? 10_554 ? 9 AC1 22 ALA A 65 ? ALA A 83 . ? 10_554 ? 10 AC1 22 ASN A 67 ? ASN A 85 . ? 10_554 ? 11 AC1 22 GLN A 107 ? GLN A 125 . ? 1_555 ? 12 AC1 22 ASP A 141 ? ASP A 159 . ? 10_554 ? 13 AC1 22 ILE A 144 ? ILE A 162 . ? 10_554 ? 14 AC1 22 PRO A 162 ? PRO A 180 . ? 1_555 ? 15 AC1 22 ARG A 163 ? ARG A 181 . ? 1_555 ? 16 AC1 22 ALA A 164 ? ALA A 182 . ? 1_555 ? 17 AC1 22 SER A 165 ? SER A 183 . ? 1_555 ? 18 AC1 22 MSE A 185 ? MSE A 203 . ? 1_555 ? 19 AC1 22 HOH H . ? HOH A 223 . ? 10_554 ? 20 AC1 22 HOH H . ? HOH A 280 . ? 10_554 ? 21 AC1 22 HOH H . ? HOH A 306 . ? 1_555 ? 22 AC1 22 HOH H . ? HOH A 376 . ? 1_555 ? 23 AC2 3 ALA A 65 ? ALA A 83 . ? 10_554 ? 24 AC2 3 MSE A 66 ? MSE A 84 . ? 10_554 ? 25 AC2 3 FMN B . ? FMN A 300 . ? 1_555 ? 26 AC3 9 HOH H . ? HOH A 13 . ? 1_555 ? 27 AC3 9 GLU A 3 ? GLU A 21 . ? 8_565 ? 28 AC3 9 HIS A 99 ? HIS A 117 . ? 1_555 ? 29 AC3 9 SER A 101 ? SER A 119 . ? 1_555 ? 30 AC3 9 ALA A 102 ? ALA A 120 . ? 1_555 ? 31 AC3 9 ARG A 170 ? ARG A 188 . ? 1_555 ? 32 AC3 9 HOH H . ? HOH A 221 . ? 1_555 ? 33 AC3 9 HOH H . ? HOH A 225 . ? 1_555 ? 34 AC3 9 HOH H . ? HOH A 335 . ? 1_555 ? 35 AC4 3 SER A 131 ? SER A 149 . ? 1_555 ? 36 AC4 3 ASN A 132 ? ASN A 150 . ? 1_555 ? 37 AC4 3 HIS A 133 ? HIS A 151 . ? 1_555 ? 38 AC5 8 SER A 38 ? SER A 56 . ? 1_555 ? 39 AC5 8 ASN A 39 ? ASN A 57 . ? 1_555 ? 40 AC5 8 THR A 40 ? THR A 58 . ? 1_555 ? 41 AC5 8 HOH H . ? HOH A 272 . ? 8_665 ? 42 AC5 8 HOH H . ? HOH A 313 . ? 1_555 ? 43 AC5 8 HOH H . ? HOH A 330 . ? 1_555 ? 44 AC5 8 HOH H . ? HOH A 334 . ? 1_555 ? 45 AC5 8 HOH H . ? HOH A 335 . ? 8_665 ? 46 AC6 5 GLU A 25 ? GLU A 43 . ? 1_555 ? 47 AC6 5 HIS A 27 ? HIS A 45 . ? 1_555 ? 48 AC6 5 ARG A 157 ? ARG A 175 . ? 1_555 ? 49 AC6 5 PHE A 192 ? PHE A 210 . ? 1_555 ? 50 AC6 5 HOH H . ? HOH A 258 . ? 1_555 ? # _atom_sites.entry_id 3HOI _atom_sites.fract_transf_matrix[1][1] 0.020461 _atom_sites.fract_transf_matrix[1][2] 0.011813 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023627 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003388 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 ALA 2 20 20 ALA ALA A . n A 1 3 GLU 3 21 21 GLU GLU A . n A 1 4 ARG 4 22 22 ARG ARG A . n A 1 5 THR 5 23 23 THR THR A . n A 1 6 ILE 6 24 24 ILE ILE A . n A 1 7 GLN 7 25 25 GLN GLN A . n A 1 8 LEU 8 26 26 LEU LEU A . n A 1 9 PRO 9 27 27 PRO PRO A . n A 1 10 LYS 10 28 28 LYS LYS A . n A 1 11 PRO 11 29 29 PRO PRO A . n A 1 12 ASP 12 30 30 ASP ASP A . n A 1 13 MSE 13 31 31 MSE MSE A . n A 1 14 ASN 14 32 32 ASN ASN A . n A 1 15 ARG 15 33 33 ARG ARG A . n A 1 16 ALA 16 34 34 ALA ALA A . n A 1 17 GLY 17 35 35 GLY GLY A . n A 1 18 LEU 18 36 36 LEU LEU A . n A 1 19 LEU 19 37 37 LEU LEU A . n A 1 20 MSE 20 38 38 MSE MSE A . n A 1 21 LYS 21 39 39 LYS LYS A . n A 1 22 ALA 22 40 40 ALA ALA A . n A 1 23 LEU 23 41 41 LEU LEU A . n A 1 24 SER 24 42 42 SER SER A . n A 1 25 GLU 25 43 43 GLU GLU A . n A 1 26 ARG 26 44 44 ARG ARG A . n A 1 27 HIS 27 45 45 HIS HIS A . n A 1 28 SER 28 46 46 SER SER A . n A 1 29 THR 29 47 47 THR THR A . n A 1 30 ARG 30 48 48 ARG ARG A . n A 1 31 GLU 31 49 49 GLU GLU A . n A 1 32 TYR 32 50 50 TYR TYR A . n A 1 33 ALA 33 51 51 ALA ALA A . n A 1 34 SER 34 52 52 SER SER A . n A 1 35 LYS 35 53 53 LYS LYS A . n A 1 36 ALA 36 54 54 ALA ALA A . n A 1 37 LEU 37 55 55 LEU LEU A . n A 1 38 SER 38 56 56 SER SER A . n A 1 39 ASN 39 57 57 ASN ASN A . n A 1 40 THR 40 58 58 THR THR A . n A 1 41 ASP 41 59 59 ASP ASP A . n A 1 42 LEU 42 60 60 LEU LEU A . n A 1 43 SER 43 61 61 SER SER A . n A 1 44 ASP 44 62 62 ASP ASP A . n A 1 45 LEU 45 63 63 LEU LEU A . n A 1 46 LEU 46 64 64 LEU LEU A . n A 1 47 TRP 47 65 65 TRP TRP A . n A 1 48 ALA 48 66 66 ALA ALA A . n A 1 49 ALA 49 67 67 ALA ALA A . n A 1 50 ASN 50 68 68 ASN ASN A . n A 1 51 GLY 51 69 69 GLY GLY A . n A 1 52 ILE 52 70 70 ILE ILE A . n A 1 53 ASN 53 71 71 ASN ASN A . n A 1 54 ARG 54 72 72 ARG ARG A . n A 1 55 SER 55 73 73 SER SER A . n A 1 56 SER 56 74 74 SER SER A . n A 1 57 GLU 57 75 75 GLU GLU A . n A 1 58 GLY 58 76 76 GLY GLY A . n A 1 59 LYS 59 77 77 LYS LYS A . n A 1 60 ARG 60 78 78 ARG ARG A . n A 1 61 THR 61 79 79 THR THR A . n A 1 62 ALA 62 80 80 ALA ALA A . n A 1 63 PRO 63 81 81 PRO PRO A . n A 1 64 SER 64 82 82 SER SER A . n A 1 65 ALA 65 83 83 ALA ALA A . n A 1 66 MSE 66 84 84 MSE MSE A . n A 1 67 ASN 67 85 85 ASN ASN A . n A 1 68 ARG 68 86 86 ARG ARG A . n A 1 69 GLN 69 87 87 GLN GLN A . n A 1 70 ASP 70 88 88 ASP ASP A . n A 1 71 ILE 71 89 89 ILE ILE A . n A 1 72 ASP 72 90 90 ASP ASP A . n A 1 73 ILE 73 91 91 ILE ILE A . n A 1 74 TYR 74 92 92 TYR TYR A . n A 1 75 VAL 75 93 93 VAL VAL A . n A 1 76 VAL 76 94 94 VAL VAL A . n A 1 77 LEU 77 95 95 LEU LEU A . n A 1 78 PRO 78 96 96 PRO PRO A . n A 1 79 GLN 79 97 97 GLN GLN A . n A 1 80 GLY 80 98 98 GLY GLY A . n A 1 81 THR 81 99 99 THR THR A . n A 1 82 TYR 82 100 100 TYR TYR A . n A 1 83 LEU 83 101 101 LEU LEU A . n A 1 84 TYR 84 102 102 TYR TYR A . n A 1 85 ASP 85 103 103 ASP ASP A . n A 1 86 ALA 86 104 104 ALA ALA A . n A 1 87 LYS 87 105 105 LYS LYS A . n A 1 88 GLY 88 106 106 GLY GLY A . n A 1 89 HIS 89 107 107 HIS HIS A . n A 1 90 LYS 90 108 108 LYS LYS A . n A 1 91 LEU 91 109 109 LEU LEU A . n A 1 92 ASN 92 110 110 ASN ASN A . n A 1 93 LEU 93 111 111 LEU LEU A . n A 1 94 ILE 94 112 112 ILE ILE A . n A 1 95 SER 95 113 113 SER SER A . n A 1 96 GLU 96 114 114 GLU GLU A . n A 1 97 GLY 97 115 115 GLY GLY A . n A 1 98 ASP 98 116 116 ASP ASP A . n A 1 99 HIS 99 117 117 HIS HIS A . n A 1 100 ARG 100 118 118 ARG ARG A . n A 1 101 SER 101 119 119 SER SER A . n A 1 102 ALA 102 120 120 ALA ALA A . n A 1 103 VAL 103 121 121 VAL VAL A . n A 1 104 ALA 104 122 122 ALA ALA A . n A 1 105 GLY 105 123 123 GLY GLY A . n A 1 106 GLY 106 124 124 GLY GLY A . n A 1 107 GLN 107 125 125 GLN GLN A . n A 1 108 ALA 108 126 126 ALA ALA A . n A 1 109 PHE 109 127 127 PHE PHE A . n A 1 110 VAL 110 128 128 VAL VAL A . n A 1 111 ASN 111 129 129 ASN ASN A . n A 1 112 ASN 112 130 130 ASN ASN A . n A 1 113 ALA 113 131 131 ALA ALA A . n A 1 114 PRO 114 132 132 PRO PRO A . n A 1 115 VAL 115 133 133 VAL VAL A . n A 1 116 SER 116 134 134 SER SER A . n A 1 117 LEU 117 135 135 LEU LEU A . n A 1 118 VAL 118 136 136 VAL VAL A . n A 1 119 LEU 119 137 137 LEU LEU A . n A 1 120 VAL 120 138 138 VAL VAL A . n A 1 121 SER 121 139 139 SER SER A . n A 1 122 ASP 122 140 140 ASP ASP A . n A 1 123 LEU 123 141 141 LEU LEU A . n A 1 124 SER 124 142 142 SER SER A . n A 1 125 LYS 125 143 143 LYS LYS A . n A 1 126 LEU 126 144 144 LEU LEU A . n A 1 127 GLY 127 145 145 GLY GLY A . n A 1 128 ASP 128 146 146 ASP ASP A . n A 1 129 ALA 129 147 147 ALA ALA A . n A 1 130 LYS 130 148 148 LYS LYS A . n A 1 131 SER 131 149 149 SER SER A . n A 1 132 ASN 132 150 150 ASN ASN A . n A 1 133 HIS 133 151 151 HIS HIS A . n A 1 134 VAL 134 152 152 VAL VAL A . n A 1 135 GLN 135 153 153 GLN GLN A . n A 1 136 LEU 136 154 154 LEU LEU A . n A 1 137 MSE 137 155 155 MSE MSE A . n A 1 138 GLY 138 156 156 GLY GLY A . n A 1 139 ALA 139 157 157 ALA ALA A . n A 1 140 MSE 140 158 158 MSE MSE A . n A 1 141 ASP 141 159 159 ASP ASP A . n A 1 142 ALA 142 160 160 ALA ALA A . n A 1 143 GLY 143 161 161 GLY GLY A . n A 1 144 ILE 144 162 162 ILE ILE A . n A 1 145 VAL 145 163 163 VAL VAL A . n A 1 146 SER 146 164 164 SER SER A . n A 1 147 GLN 147 165 165 GLN GLN A . n A 1 148 ASN 148 166 166 ASN ASN A . n A 1 149 ILE 149 167 167 ILE ILE A . n A 1 150 SER 150 168 168 SER SER A . n A 1 151 LEU 151 169 169 LEU LEU A . n A 1 152 PHE 152 170 170 PHE PHE A . n A 1 153 CYS 153 171 171 CYS CYS A . n A 1 154 SER 154 172 172 SER SER A . n A 1 155 ALA 155 173 173 ALA ALA A . n A 1 156 ALA 156 174 174 ALA ALA A . n A 1 157 ARG 157 175 175 ARG ARG A . n A 1 158 LEU 158 176 176 LEU LEU A . n A 1 159 ALA 159 177 177 ALA ALA A . n A 1 160 THR 160 178 178 THR THR A . n A 1 161 VAL 161 179 179 VAL VAL A . n A 1 162 PRO 162 180 180 PRO PRO A . n A 1 163 ARG 163 181 181 ARG ARG A . n A 1 164 ALA 164 182 182 ALA ALA A . n A 1 165 SER 165 183 183 SER SER A . n A 1 166 MSE 166 184 184 MSE MSE A . n A 1 167 ASP 167 185 185 ASP ASP A . n A 1 168 LEU 168 186 186 LEU LEU A . n A 1 169 VAL 169 187 187 VAL VAL A . n A 1 170 ARG 170 188 188 ARG ARG A . n A 1 171 LEU 171 189 189 LEU LEU A . n A 1 172 LYS 172 190 190 LYS LYS A . n A 1 173 ALA 173 191 191 ALA ALA A . n A 1 174 ALA 174 192 192 ALA ALA A . n A 1 175 LEU 175 193 193 LEU LEU A . n A 1 176 LYS 176 194 194 LYS LYS A . n A 1 177 LEU 177 195 195 LEU LEU A . n A 1 178 LYS 178 196 196 LYS LYS A . n A 1 179 ASP 179 197 197 ASP ASP A . n A 1 180 THR 180 198 198 THR THR A . n A 1 181 GLN 181 199 199 GLN GLN A . n A 1 182 MSE 182 200 200 MSE MSE A . n A 1 183 PRO 183 201 201 PRO PRO A . n A 1 184 MSE 184 202 202 MSE MSE A . n A 1 185 MSE 185 203 203 MSE MSE A . n A 1 186 ASN 186 204 204 ASN ASN A . n A 1 187 HIS 187 205 205 HIS HIS A . n A 1 188 PRO 188 206 206 PRO PRO A . n A 1 189 VAL 189 207 207 VAL VAL A . n A 1 190 GLY 190 208 208 GLY GLY A . n A 1 191 TYR 191 209 209 TYR TYR A . n A 1 192 PHE 192 210 210 PHE PHE A . n A 1 193 LYS 193 211 211 LYS LYS A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN 1 300 300 FMN FMN A . C 3 UNL 1 1 1 UNL UNL A . D 4 SO4 1 2 2 SO4 SO4 A . E 4 SO4 1 3 3 SO4 SO4 A . F 5 FLC 1 4 4 FLC FLC A . G 6 PEG 1 5 5 PEG PEG A . H 7 HOH 1 6 6 HOH HOH A . H 7 HOH 2 7 7 HOH HOH A . H 7 HOH 3 8 8 HOH HOH A . H 7 HOH 4 9 9 HOH HOH A . H 7 HOH 5 10 10 HOH HOH A . H 7 HOH 6 11 11 HOH HOH A . H 7 HOH 7 12 12 HOH HOH A . H 7 HOH 8 13 13 HOH HOH A . H 7 HOH 9 14 14 HOH HOH A . H 7 HOH 10 15 15 HOH HOH A . H 7 HOH 11 16 16 HOH HOH A . H 7 HOH 12 17 17 HOH HOH A . H 7 HOH 13 18 18 HOH HOH A . H 7 HOH 14 19 19 HOH HOH A . H 7 HOH 15 212 212 HOH HOH A . H 7 HOH 16 213 20 HOH HOH A . H 7 HOH 17 214 21 HOH HOH A . H 7 HOH 18 215 22 HOH HOH A . H 7 HOH 19 216 23 HOH HOH A . H 7 HOH 20 217 24 HOH HOH A . H 7 HOH 21 218 25 HOH HOH A . H 7 HOH 22 219 26 HOH HOH A . H 7 HOH 23 220 27 HOH HOH A . H 7 HOH 24 221 28 HOH HOH A . H 7 HOH 25 222 29 HOH HOH A . H 7 HOH 26 223 30 HOH HOH A . H 7 HOH 27 224 31 HOH HOH A . H 7 HOH 28 225 32 HOH HOH A . H 7 HOH 29 226 33 HOH HOH A . H 7 HOH 30 227 34 HOH HOH A . H 7 HOH 31 228 35 HOH HOH A . H 7 HOH 32 229 36 HOH HOH A . H 7 HOH 33 230 37 HOH HOH A . H 7 HOH 34 231 38 HOH HOH A . H 7 HOH 35 232 39 HOH HOH A . H 7 HOH 36 233 40 HOH HOH A . H 7 HOH 37 234 41 HOH HOH A . H 7 HOH 38 235 42 HOH HOH A . H 7 HOH 39 236 43 HOH HOH A . H 7 HOH 40 237 44 HOH HOH A . H 7 HOH 41 238 45 HOH HOH A . H 7 HOH 42 239 46 HOH HOH A . H 7 HOH 43 240 47 HOH HOH A . H 7 HOH 44 241 48 HOH HOH A . H 7 HOH 45 242 49 HOH HOH A . H 7 HOH 46 243 50 HOH HOH A . H 7 HOH 47 244 51 HOH HOH A . H 7 HOH 48 245 52 HOH HOH A . H 7 HOH 49 246 53 HOH HOH A . H 7 HOH 50 247 54 HOH HOH A . H 7 HOH 51 248 55 HOH HOH A . H 7 HOH 52 249 56 HOH HOH A . H 7 HOH 53 250 57 HOH HOH A . H 7 HOH 54 251 58 HOH HOH A . H 7 HOH 55 252 59 HOH HOH A . H 7 HOH 56 253 60 HOH HOH A . H 7 HOH 57 254 61 HOH HOH A . H 7 HOH 58 255 62 HOH HOH A . H 7 HOH 59 256 63 HOH HOH A . H 7 HOH 60 257 64 HOH HOH A . H 7 HOH 61 258 65 HOH HOH A . H 7 HOH 62 259 66 HOH HOH A . H 7 HOH 63 260 67 HOH HOH A . H 7 HOH 64 261 68 HOH HOH A . H 7 HOH 65 262 69 HOH HOH A . H 7 HOH 66 263 70 HOH HOH A . H 7 HOH 67 264 71 HOH HOH A . H 7 HOH 68 265 72 HOH HOH A . H 7 HOH 69 266 73 HOH HOH A . H 7 HOH 70 267 74 HOH HOH A . H 7 HOH 71 268 75 HOH HOH A . H 7 HOH 72 269 76 HOH HOH A . H 7 HOH 73 270 77 HOH HOH A . H 7 HOH 74 271 78 HOH HOH A . H 7 HOH 75 272 79 HOH HOH A . H 7 HOH 76 273 80 HOH HOH A . H 7 HOH 77 274 81 HOH HOH A . H 7 HOH 78 275 82 HOH HOH A . H 7 HOH 79 276 83 HOH HOH A . H 7 HOH 80 277 84 HOH HOH A . H 7 HOH 81 278 85 HOH HOH A . H 7 HOH 82 279 86 HOH HOH A . H 7 HOH 83 280 87 HOH HOH A . H 7 HOH 84 281 88 HOH HOH A . H 7 HOH 85 282 89 HOH HOH A . H 7 HOH 86 283 90 HOH HOH A . H 7 HOH 87 284 91 HOH HOH A . H 7 HOH 88 285 92 HOH HOH A . H 7 HOH 89 286 93 HOH HOH A . H 7 HOH 90 287 94 HOH HOH A . H 7 HOH 91 288 95 HOH HOH A . H 7 HOH 92 289 96 HOH HOH A . H 7 HOH 93 290 97 HOH HOH A . H 7 HOH 94 291 98 HOH HOH A . H 7 HOH 95 292 99 HOH HOH A . H 7 HOH 96 293 100 HOH HOH A . H 7 HOH 97 294 101 HOH HOH A . H 7 HOH 98 295 102 HOH HOH A . H 7 HOH 99 296 103 HOH HOH A . H 7 HOH 100 297 104 HOH HOH A . H 7 HOH 101 298 105 HOH HOH A . H 7 HOH 102 299 106 HOH HOH A . H 7 HOH 103 301 107 HOH HOH A . H 7 HOH 104 302 108 HOH HOH A . H 7 HOH 105 303 109 HOH HOH A . H 7 HOH 106 304 110 HOH HOH A . H 7 HOH 107 305 111 HOH HOH A . H 7 HOH 108 306 112 HOH HOH A . H 7 HOH 109 307 113 HOH HOH A . H 7 HOH 110 308 114 HOH HOH A . H 7 HOH 111 309 115 HOH HOH A . H 7 HOH 112 310 116 HOH HOH A . H 7 HOH 113 311 117 HOH HOH A . H 7 HOH 114 312 118 HOH HOH A . H 7 HOH 115 313 119 HOH HOH A . H 7 HOH 116 314 120 HOH HOH A . H 7 HOH 117 315 121 HOH HOH A . H 7 HOH 118 316 122 HOH HOH A . H 7 HOH 119 317 123 HOH HOH A . H 7 HOH 120 318 124 HOH HOH A . H 7 HOH 121 319 125 HOH HOH A . H 7 HOH 122 320 126 HOH HOH A . H 7 HOH 123 321 127 HOH HOH A . H 7 HOH 124 322 128 HOH HOH A . H 7 HOH 125 323 129 HOH HOH A . H 7 HOH 126 324 130 HOH HOH A . H 7 HOH 127 325 131 HOH HOH A . H 7 HOH 128 326 132 HOH HOH A . H 7 HOH 129 327 133 HOH HOH A . H 7 HOH 130 328 134 HOH HOH A . H 7 HOH 131 329 135 HOH HOH A . H 7 HOH 132 330 136 HOH HOH A . H 7 HOH 133 331 137 HOH HOH A . H 7 HOH 134 332 138 HOH HOH A . H 7 HOH 135 333 139 HOH HOH A . H 7 HOH 136 334 140 HOH HOH A . H 7 HOH 137 335 141 HOH HOH A . H 7 HOH 138 336 142 HOH HOH A . H 7 HOH 139 337 143 HOH HOH A . H 7 HOH 140 338 144 HOH HOH A . H 7 HOH 141 339 145 HOH HOH A . H 7 HOH 142 340 146 HOH HOH A . H 7 HOH 143 341 147 HOH HOH A . H 7 HOH 144 342 148 HOH HOH A . H 7 HOH 145 343 149 HOH HOH A . H 7 HOH 146 344 150 HOH HOH A . H 7 HOH 147 345 151 HOH HOH A . H 7 HOH 148 346 152 HOH HOH A . H 7 HOH 149 347 153 HOH HOH A . H 7 HOH 150 348 154 HOH HOH A . H 7 HOH 151 349 155 HOH HOH A . H 7 HOH 152 350 156 HOH HOH A . H 7 HOH 153 351 157 HOH HOH A . H 7 HOH 154 352 158 HOH HOH A . H 7 HOH 155 353 159 HOH HOH A . H 7 HOH 156 354 160 HOH HOH A . H 7 HOH 157 355 161 HOH HOH A . H 7 HOH 158 356 162 HOH HOH A . H 7 HOH 159 357 163 HOH HOH A . H 7 HOH 160 358 164 HOH HOH A . H 7 HOH 161 359 165 HOH HOH A . H 7 HOH 162 360 166 HOH HOH A . H 7 HOH 163 361 167 HOH HOH A . H 7 HOH 164 362 168 HOH HOH A . H 7 HOH 165 363 169 HOH HOH A . H 7 HOH 166 364 170 HOH HOH A . H 7 HOH 167 365 171 HOH HOH A . H 7 HOH 168 366 172 HOH HOH A . H 7 HOH 169 367 173 HOH HOH A . H 7 HOH 170 368 174 HOH HOH A . H 7 HOH 171 369 175 HOH HOH A . H 7 HOH 172 370 176 HOH HOH A . H 7 HOH 173 371 177 HOH HOH A . H 7 HOH 174 372 178 HOH HOH A . H 7 HOH 175 373 179 HOH HOH A . H 7 HOH 176 374 180 HOH HOH A . H 7 HOH 177 375 181 HOH HOH A . H 7 HOH 178 376 182 HOH HOH A . H 7 HOH 179 377 183 HOH HOH A . H 7 HOH 180 378 184 HOH HOH A . H 7 HOH 181 379 185 HOH HOH A . H 7 HOH 182 380 186 HOH HOH A . H 7 HOH 183 381 187 HOH HOH A . H 7 HOH 184 382 188 HOH HOH A . H 7 HOH 185 383 189 HOH HOH A . H 7 HOH 186 384 190 HOH HOH A . H 7 HOH 187 385 191 HOH HOH A . H 7 HOH 188 386 192 HOH HOH A . H 7 HOH 189 387 193 HOH HOH A . H 7 HOH 190 388 194 HOH HOH A . H 7 HOH 191 389 195 HOH HOH A . H 7 HOH 192 390 196 HOH HOH A . H 7 HOH 193 391 197 HOH HOH A . H 7 HOH 194 392 198 HOH HOH A . H 7 HOH 195 393 199 HOH HOH A . H 7 HOH 196 394 200 HOH HOH A . H 7 HOH 197 395 201 HOH HOH A . H 7 HOH 198 396 202 HOH HOH A . H 7 HOH 199 397 203 HOH HOH A . H 7 HOH 200 398 204 HOH HOH A . H 7 HOH 201 399 205 HOH HOH A . H 7 HOH 202 400 206 HOH HOH A . H 7 HOH 203 401 207 HOH HOH A . H 7 HOH 204 402 208 HOH HOH A . H 7 HOH 205 403 209 HOH HOH A . H 7 HOH 206 404 210 HOH HOH A . H 7 HOH 207 405 211 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 31 ? MET SELENOMETHIONINE 2 A MSE 20 A MSE 38 ? MET SELENOMETHIONINE 3 A MSE 66 A MSE 84 ? MET SELENOMETHIONINE 4 A MSE 137 A MSE 155 ? MET SELENOMETHIONINE 5 A MSE 140 A MSE 158 ? MET SELENOMETHIONINE 6 A MSE 166 A MSE 184 ? MET SELENOMETHIONINE 7 A MSE 182 A MSE 200 ? MET SELENOMETHIONINE 8 A MSE 184 A MSE 202 ? MET SELENOMETHIONINE 9 A MSE 185 A MSE 203 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7540 ? 1 MORE -86 ? 1 'SSA (A^2)' 14720 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -49.1990000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 332 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -17.1917 _pdbx_refine_tls.origin_y 17.0044 _pdbx_refine_tls.origin_z -13.7057 _pdbx_refine_tls.T[1][1] -0.0535 _pdbx_refine_tls.T[2][2] -0.0409 _pdbx_refine_tls.T[3][3] -0.0304 _pdbx_refine_tls.T[1][2] -0.0173 _pdbx_refine_tls.T[1][3] -0.0019 _pdbx_refine_tls.T[2][3] -0.0046 _pdbx_refine_tls.L[1][1] 0.5919 _pdbx_refine_tls.L[2][2] 0.6705 _pdbx_refine_tls.L[3][3] 1.5660 _pdbx_refine_tls.L[1][2] -0.0665 _pdbx_refine_tls.L[1][3] -0.0817 _pdbx_refine_tls.L[2][3] 0.1705 _pdbx_refine_tls.S[1][1] 0.0077 _pdbx_refine_tls.S[2][2] 0.0172 _pdbx_refine_tls.S[3][3] -0.0249 _pdbx_refine_tls.S[1][2] -0.0867 _pdbx_refine_tls.S[1][3] 0.0552 _pdbx_refine_tls.S[2][3] -0.0101 _pdbx_refine_tls.S[2][1] 0.0140 _pdbx_refine_tls.S[3][1] -0.1088 _pdbx_refine_tls.S[3][2] 0.0752 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 211 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3HOI _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 20-211) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MSE A 31 ? A -66.06 4.25 2 1 ASN A 68 ? ? -164.02 40.60 3 1 HIS A 107 ? A 34.76 60.24 4 1 HIS A 107 ? B 33.27 62.54 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 28 ? CD ? A LYS 10 CD 2 1 Y 1 A LYS 28 ? CE ? A LYS 10 CE 3 1 Y 1 A LYS 28 ? NZ ? A LYS 10 NZ 4 1 Y 1 A LYS 105 ? CD ? A LYS 87 CD 5 1 Y 1 A LYS 105 ? CE ? A LYS 87 CE 6 1 Y 1 A LYS 105 ? NZ ? A LYS 87 NZ 7 1 Y 1 A LYS 148 ? CE ? A LYS 130 CE 8 1 Y 1 A LYS 148 ? NZ ? A LYS 130 NZ 9 1 Y 1 A ARG 175 ? NH1 ? A ARG 157 NH1 10 1 Y 1 A ARG 175 ? NH2 ? A ARG 157 NH2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 'UNKNOWN LIGAND' UNL 4 'SULFATE ION' SO4 5 'CITRATE ANION' FLC 6 'DI(HYDROXYETHYL)ETHER' PEG 7 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #