data_3HPC # _entry.id 3HPC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HPC pdb_00003hpc 10.2210/pdb3hpc/pdb RCSB RCSB053416 ? ? WWPDB D_1000053416 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3HPB _pdbx_database_related.details 'Crystal structure of SNX5-PX domain in P212121 space group' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3HPC _pdbx_database_status.recvd_initial_deposition_date 2009-06-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Koharudin, L.M.I.' 1 'Furey, W.' 2 'Gronenborn, A.M.' 3 # _citation.id primary _citation.title ;The Phox domain of sorting nexin 5 lacks ptdins(3)p specificity and preferentially binds to ptdins(4,5)P2 ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Koharudin, L.M.I.' 1 ? primary 'Furey, W.' 2 ? primary 'Liu, H.' 3 ? primary 'Liu, Y.-J.' 4 ? primary 'Gronenborn, A.M.' 5 ? # _cell.entry_id 3HPC _cell.length_a 43.598 _cell.length_b 41.424 _cell.length_c 47.227 _cell.angle_alpha 90.00 _cell.angle_beta 92.98 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HPC _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Snx5 protein' 18508.824 1 ? ? 'Residues 20-180' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 238 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDF DGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNT K ; _entity_poly.pdbx_seq_one_letter_code_can ;SVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDF DGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNT K ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 VAL n 1 3 SER n 1 4 VAL n 1 5 ASP n 1 6 LEU n 1 7 ASN n 1 8 VAL n 1 9 ASP n 1 10 PRO n 1 11 SER n 1 12 LEU n 1 13 GLN n 1 14 ILE n 1 15 ASP n 1 16 ILE n 1 17 PRO n 1 18 ASP n 1 19 ALA n 1 20 LEU n 1 21 SER n 1 22 GLU n 1 23 ARG n 1 24 ASP n 1 25 LYS n 1 26 VAL n 1 27 LYS n 1 28 PHE n 1 29 THR n 1 30 VAL n 1 31 HIS n 1 32 THR n 1 33 LYS n 1 34 THR n 1 35 THR n 1 36 LEU n 1 37 PRO n 1 38 THR n 1 39 PHE n 1 40 GLN n 1 41 SER n 1 42 PRO n 1 43 GLU n 1 44 PHE n 1 45 SER n 1 46 VAL n 1 47 THR n 1 48 ARG n 1 49 GLN n 1 50 HIS n 1 51 GLU n 1 52 ASP n 1 53 PHE n 1 54 VAL n 1 55 TRP n 1 56 LEU n 1 57 HIS n 1 58 ASP n 1 59 THR n 1 60 LEU n 1 61 THR n 1 62 GLU n 1 63 THR n 1 64 THR n 1 65 ASP n 1 66 TYR n 1 67 ALA n 1 68 GLY n 1 69 LEU n 1 70 ILE n 1 71 ILE n 1 72 PRO n 1 73 PRO n 1 74 ALA n 1 75 PRO n 1 76 THR n 1 77 LYS n 1 78 PRO n 1 79 ASP n 1 80 PHE n 1 81 ASP n 1 82 GLY n 1 83 PRO n 1 84 ARG n 1 85 GLU n 1 86 LYS n 1 87 MET n 1 88 GLN n 1 89 LYS n 1 90 LEU n 1 91 GLY n 1 92 GLU n 1 93 GLY n 1 94 GLU n 1 95 GLY n 1 96 SER n 1 97 MET n 1 98 THR n 1 99 LYS n 1 100 GLU n 1 101 GLU n 1 102 PHE n 1 103 ALA n 1 104 LYS n 1 105 MET n 1 106 LYS n 1 107 GLN n 1 108 GLU n 1 109 LEU n 1 110 GLU n 1 111 ALA n 1 112 GLU n 1 113 TYR n 1 114 LEU n 1 115 ALA n 1 116 VAL n 1 117 PHE n 1 118 LYS n 1 119 LYS n 1 120 THR n 1 121 VAL n 1 122 SER n 1 123 SER n 1 124 HIS n 1 125 GLU n 1 126 VAL n 1 127 PHE n 1 128 LEU n 1 129 GLN n 1 130 ARG n 1 131 LEU n 1 132 SER n 1 133 SER n 1 134 HIS n 1 135 PRO n 1 136 VAL n 1 137 LEU n 1 138 SER n 1 139 LYS n 1 140 ASP n 1 141 ARG n 1 142 ASN n 1 143 PHE n 1 144 HIS n 1 145 VAL n 1 146 PHE n 1 147 LEU n 1 148 GLU n 1 149 TYR n 1 150 ASP n 1 151 GLN n 1 152 ASP n 1 153 LEU n 1 154 SER n 1 155 VAL n 1 156 ARG n 1 157 ARG n 1 158 LYS n 1 159 ASN n 1 160 THR n 1 161 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name rat _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Snx5 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B1H267_RAT _struct_ref.pdbx_db_accession B1H267 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDF DGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNT K ; _struct_ref.pdbx_align_begin 20 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HPC _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 161 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B1H267 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 180 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 180 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3HPC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.300956 _exptl_crystal.density_percent_sol 46.543972 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;The protein solution in the final superdex-75 buffer (20 mM Tris.HCl, 100 mM NaCl, 0.02% NaN3, pH 8.0) was concentrated to 8 mg/ml and crystallization were obtained using an optimized crystallization condition of 8ul of protein vs 1ul of reservoir solution (0.2M NH4CH3COO, 0.1M Sodium cacodylate tryhydrate pH 6.5, 30% PEG 4000), VAPOR DIFFUSION, SITTING DROP, temperature 277K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944' _diffrn_detector.pdbx_collection_date 2007-06-15 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'OSMIC MIRRORS' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3HPC _reflns.observed_criterion_sigma_I 3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 31.120 _reflns.d_resolution_high 1.470 _reflns.number_obs 28322 _reflns.number_all ? _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs 0.04300 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.1000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.130 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.47 _reflns_shell.d_res_low 1.52 _reflns_shell.percent_possible_all 90.8 _reflns_shell.Rmerge_I_obs 0.32500 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.400 _reflns_shell.pdbx_redundancy 2.65 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3HPC _refine.ls_number_reflns_obs 26873 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 31.12 _refine.ls_d_res_high 1.47 _refine.ls_percent_reflns_obs 98.2 _refine.ls_R_factor_obs 0.187 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.184 _refine.ls_R_factor_R_free 0.234 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1440 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.B_iso_mean 26.45 _refine.aniso_B[1][1] -0.10000 _refine.aniso_B[2][2] 0.61000 _refine.aniso_B[3][3] -0.51000 _refine.aniso_B[1][2] -0.00000 _refine.aniso_B[1][3] -0.01000 _refine.aniso_B[2][3] -0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 3HPB _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.098 _refine.pdbx_overall_ESU_R_Free 0.085 _refine.overall_SU_ML 0.055 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.265 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1323 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 238 _refine_hist.number_atoms_total 1562 _refine_hist.d_res_high 1.47 _refine_hist.d_res_low 31.12 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.022 ? 1362 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.296 1.964 ? 1863 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.739 5.000 ? 173 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 42.130 25.385 ? 65 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.856 15.000 ? 240 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.311 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.097 0.200 ? 208 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.015 0.021 ? 1061 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.827 1.500 ? 838 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 4.047 2.000 ? 1387 'X-RAY DIFFRACTION' ? r_scbond_it 5.567 3.000 ? 524 'X-RAY DIFFRACTION' ? r_scangle_it 8.036 4.500 ? 476 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 3.334 3.000 ? 1362 'X-RAY DIFFRACTION' ? r_sphericity_free 14.952 3.000 ? 252 'X-RAY DIFFRACTION' ? r_sphericity_bonded 11.584 3.000 ? 1323 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.47 _refine_ls_shell.d_res_low 1.51 _refine_ls_shell.number_reflns_R_work 1753 _refine_ls_shell.R_factor_R_work 0.4210 _refine_ls_shell.percent_reflns_obs 88.17 _refine_ls_shell.R_factor_R_free 0.4500 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 103 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3HPC _struct.title 'Crystal structure of SNX5-PX domain in P21 space group' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HPC _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'Sprting nexin, SNX5, Phox, SNX5-PX, PhosphatidylInositol, PI(4, 5)P2, CELL ADHESION, PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 49 ? THR A 63 ? GLN X 68 THR X 82 1 ? 15 HELX_P HELX_P2 2 THR A 64 ? ALA A 67 ? THR X 83 ALA X 86 5 ? 4 HELX_P HELX_P3 3 PHE A 80 ? GLY A 93 ? PHE X 99 GLY X 112 1 ? 14 HELX_P HELX_P4 4 GLU A 94 ? MET A 97 ? GLU X 113 MET X 116 5 ? 4 HELX_P HELX_P5 5 THR A 98 ? HIS A 134 ? THR X 117 HIS X 153 1 ? 37 HELX_P HELX_P6 6 VAL A 136 ? LYS A 139 ? VAL X 155 LYS X 158 5 ? 4 HELX_P HELX_P7 7 ASP A 140 ? TYR A 149 ? ASP X 159 TYR X 168 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 12 ? GLU A 22 ? LEU X 31 GLU X 41 A 2 LYS A 25 ? THR A 34 ? LYS X 44 THR X 53 A 3 GLU A 43 ? ARG A 48 ? GLU X 62 ARG X 67 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 15 ? N ASP X 34 O HIS A 31 ? O HIS X 50 A 2 3 N PHE A 28 ? N PHE X 47 O ARG A 48 ? O ARG X 67 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id X _struct_site.pdbx_auth_comp_id CL _struct_site.pdbx_auth_seq_id 181 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE CL X 181' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 VAL A 26 ? VAL X 45 . ? 1_555 ? 2 AC1 3 PRO A 78 ? PRO X 97 . ? 1_555 ? 3 AC1 3 HOH C . ? HOH X 204 . ? 1_555 ? # _database_PDB_matrix.entry_id 3HPC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3HPC _atom_sites.fract_transf_matrix[1][1] 0.022937 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001194 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024141 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021203 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 20 20 SER SER X . n A 1 2 VAL 2 21 21 VAL VAL X . n A 1 3 SER 3 22 22 SER SER X . n A 1 4 VAL 4 23 23 VAL VAL X . n A 1 5 ASP 5 24 24 ASP ASP X . n A 1 6 LEU 6 25 25 LEU LEU X . n A 1 7 ASN 7 26 26 ASN ASN X . n A 1 8 VAL 8 27 27 VAL VAL X . n A 1 9 ASP 9 28 28 ASP ASP X . n A 1 10 PRO 10 29 29 PRO PRO X . n A 1 11 SER 11 30 30 SER SER X . n A 1 12 LEU 12 31 31 LEU LEU X . n A 1 13 GLN 13 32 32 GLN GLN X . n A 1 14 ILE 14 33 33 ILE ILE X . n A 1 15 ASP 15 34 34 ASP ASP X . n A 1 16 ILE 16 35 35 ILE ILE X . n A 1 17 PRO 17 36 36 PRO PRO X . n A 1 18 ASP 18 37 37 ASP ASP X . n A 1 19 ALA 19 38 38 ALA ALA X . n A 1 20 LEU 20 39 39 LEU LEU X . n A 1 21 SER 21 40 40 SER SER X . n A 1 22 GLU 22 41 41 GLU GLU X . n A 1 23 ARG 23 42 42 ARG ARG X . n A 1 24 ASP 24 43 43 ASP ASP X . n A 1 25 LYS 25 44 44 LYS LYS X . n A 1 26 VAL 26 45 45 VAL VAL X . n A 1 27 LYS 27 46 46 LYS LYS X . n A 1 28 PHE 28 47 47 PHE PHE X . n A 1 29 THR 29 48 48 THR THR X . n A 1 30 VAL 30 49 49 VAL VAL X . n A 1 31 HIS 31 50 50 HIS HIS X . n A 1 32 THR 32 51 51 THR THR X . n A 1 33 LYS 33 52 52 LYS LYS X . n A 1 34 THR 34 53 53 THR THR X . n A 1 35 THR 35 54 54 THR THR X . n A 1 36 LEU 36 55 55 LEU LEU X . n A 1 37 PRO 37 56 56 PRO PRO X . n A 1 38 THR 38 57 57 THR THR X . n A 1 39 PHE 39 58 58 PHE PHE X . n A 1 40 GLN 40 59 59 GLN GLN X . n A 1 41 SER 41 60 60 SER SER X . n A 1 42 PRO 42 61 61 PRO PRO X . n A 1 43 GLU 43 62 62 GLU GLU X . n A 1 44 PHE 44 63 63 PHE PHE X . n A 1 45 SER 45 64 64 SER SER X . n A 1 46 VAL 46 65 65 VAL VAL X . n A 1 47 THR 47 66 66 THR THR X . n A 1 48 ARG 48 67 67 ARG ARG X . n A 1 49 GLN 49 68 68 GLN GLN X . n A 1 50 HIS 50 69 69 HIS HIS X . n A 1 51 GLU 51 70 70 GLU GLU X . n A 1 52 ASP 52 71 71 ASP ASP X . n A 1 53 PHE 53 72 72 PHE PHE X . n A 1 54 VAL 54 73 73 VAL VAL X . n A 1 55 TRP 55 74 74 TRP TRP X . n A 1 56 LEU 56 75 75 LEU LEU X . n A 1 57 HIS 57 76 76 HIS HIS X . n A 1 58 ASP 58 77 77 ASP ASP X . n A 1 59 THR 59 78 78 THR THR X . n A 1 60 LEU 60 79 79 LEU LEU X . n A 1 61 THR 61 80 80 THR THR X . n A 1 62 GLU 62 81 81 GLU GLU X . n A 1 63 THR 63 82 82 THR THR X . n A 1 64 THR 64 83 83 THR THR X . n A 1 65 ASP 65 84 84 ASP ASP X . n A 1 66 TYR 66 85 85 TYR TYR X . n A 1 67 ALA 67 86 86 ALA ALA X . n A 1 68 GLY 68 87 87 GLY GLY X . n A 1 69 LEU 69 88 88 LEU LEU X . n A 1 70 ILE 70 89 89 ILE ILE X . n A 1 71 ILE 71 90 90 ILE ILE X . n A 1 72 PRO 72 91 91 PRO PRO X . n A 1 73 PRO 73 92 92 PRO PRO X . n A 1 74 ALA 74 93 93 ALA ALA X . n A 1 75 PRO 75 94 94 PRO PRO X . n A 1 76 THR 76 95 95 THR THR X . n A 1 77 LYS 77 96 96 LYS LYS X . n A 1 78 PRO 78 97 97 PRO PRO X . n A 1 79 ASP 79 98 98 ASP ASP X . n A 1 80 PHE 80 99 99 PHE PHE X . n A 1 81 ASP 81 100 100 ASP ASP X . n A 1 82 GLY 82 101 101 GLY GLY X . n A 1 83 PRO 83 102 102 PRO PRO X . n A 1 84 ARG 84 103 103 ARG ARG X . n A 1 85 GLU 85 104 104 GLU GLU X . n A 1 86 LYS 86 105 105 LYS LYS X . n A 1 87 MET 87 106 106 MET MET X . n A 1 88 GLN 88 107 107 GLN GLN X . n A 1 89 LYS 89 108 108 LYS LYS X . n A 1 90 LEU 90 109 109 LEU LEU X . n A 1 91 GLY 91 110 110 GLY GLY X . n A 1 92 GLU 92 111 111 GLU GLU X . n A 1 93 GLY 93 112 112 GLY GLY X . n A 1 94 GLU 94 113 113 GLU GLU X . n A 1 95 GLY 95 114 114 GLY GLY X . n A 1 96 SER 96 115 115 SER SER X . n A 1 97 MET 97 116 116 MET MET X . n A 1 98 THR 98 117 117 THR THR X . n A 1 99 LYS 99 118 118 LYS LYS X . n A 1 100 GLU 100 119 119 GLU GLU X . n A 1 101 GLU 101 120 120 GLU GLU X . n A 1 102 PHE 102 121 121 PHE PHE X . n A 1 103 ALA 103 122 122 ALA ALA X . n A 1 104 LYS 104 123 123 LYS LYS X . n A 1 105 MET 105 124 124 MET MET X . n A 1 106 LYS 106 125 125 LYS LYS X . n A 1 107 GLN 107 126 126 GLN GLN X . n A 1 108 GLU 108 127 127 GLU GLU X . n A 1 109 LEU 109 128 128 LEU LEU X . n A 1 110 GLU 110 129 129 GLU GLU X . n A 1 111 ALA 111 130 130 ALA ALA X . n A 1 112 GLU 112 131 131 GLU GLU X . n A 1 113 TYR 113 132 132 TYR TYR X . n A 1 114 LEU 114 133 133 LEU LEU X . n A 1 115 ALA 115 134 134 ALA ALA X . n A 1 116 VAL 116 135 135 VAL VAL X . n A 1 117 PHE 117 136 136 PHE PHE X . n A 1 118 LYS 118 137 137 LYS LYS X . n A 1 119 LYS 119 138 138 LYS LYS X . n A 1 120 THR 120 139 139 THR THR X . n A 1 121 VAL 121 140 140 VAL VAL X . n A 1 122 SER 122 141 141 SER SER X . n A 1 123 SER 123 142 142 SER SER X . n A 1 124 HIS 124 143 143 HIS HIS X . n A 1 125 GLU 125 144 144 GLU GLU X . n A 1 126 VAL 126 145 145 VAL VAL X . n A 1 127 PHE 127 146 146 PHE PHE X . n A 1 128 LEU 128 147 147 LEU LEU X . n A 1 129 GLN 129 148 148 GLN GLN X . n A 1 130 ARG 130 149 149 ARG ARG X . n A 1 131 LEU 131 150 150 LEU LEU X . n A 1 132 SER 132 151 151 SER SER X . n A 1 133 SER 133 152 152 SER SER X . n A 1 134 HIS 134 153 153 HIS HIS X . n A 1 135 PRO 135 154 154 PRO PRO X . n A 1 136 VAL 136 155 155 VAL VAL X . n A 1 137 LEU 137 156 156 LEU LEU X . n A 1 138 SER 138 157 157 SER SER X . n A 1 139 LYS 139 158 158 LYS LYS X . n A 1 140 ASP 140 159 159 ASP ASP X . n A 1 141 ARG 141 160 160 ARG ARG X . n A 1 142 ASN 142 161 161 ASN ASN X . n A 1 143 PHE 143 162 162 PHE PHE X . n A 1 144 HIS 144 163 163 HIS HIS X . n A 1 145 VAL 145 164 164 VAL VAL X . n A 1 146 PHE 146 165 165 PHE PHE X . n A 1 147 LEU 147 166 166 LEU LEU X . n A 1 148 GLU 148 167 167 GLU GLU X . n A 1 149 TYR 149 168 168 TYR TYR X . n A 1 150 ASP 150 169 169 ASP ASP X . n A 1 151 GLN 151 170 170 GLN GLN X . n A 1 152 ASP 152 171 171 ASP ASP X . n A 1 153 LEU 153 172 172 LEU LEU X . n A 1 154 SER 154 173 173 SER SER X . n A 1 155 VAL 155 174 174 VAL VAL X . n A 1 156 ARG 156 175 ? ? ? X . n A 1 157 ARG 157 176 ? ? ? X . n A 1 158 LYS 158 177 ? ? ? X . n A 1 159 ASN 159 178 ? ? ? X . n A 1 160 THR 160 179 ? ? ? X . n A 1 161 LYS 161 180 ? ? ? X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 181 181 CL CL X . C 3 HOH 1 182 182 HOH HOH X . C 3 HOH 2 183 183 HOH HOH X . C 3 HOH 3 184 184 HOH HOH X . C 3 HOH 4 185 185 HOH HOH X . C 3 HOH 5 187 187 HOH HOH X . C 3 HOH 6 188 188 HOH HOH X . C 3 HOH 7 189 189 HOH HOH X . C 3 HOH 8 190 190 HOH HOH X . C 3 HOH 9 191 191 HOH HOH X . C 3 HOH 10 192 192 HOH HOH X . C 3 HOH 11 193 193 HOH HOH X . C 3 HOH 12 194 194 HOH HOH X . C 3 HOH 13 195 195 HOH HOH X . C 3 HOH 14 196 196 HOH HOH X . C 3 HOH 15 197 197 HOH HOH X . C 3 HOH 16 198 198 HOH HOH X . C 3 HOH 17 199 199 HOH HOH X . C 3 HOH 18 200 200 HOH HOH X . C 3 HOH 19 201 201 HOH HOH X . C 3 HOH 20 202 202 HOH HOH X . C 3 HOH 21 203 203 HOH HOH X . C 3 HOH 22 204 204 HOH HOH X . C 3 HOH 23 205 205 HOH HOH X . C 3 HOH 24 206 206 HOH HOH X . C 3 HOH 25 207 207 HOH HOH X . C 3 HOH 26 208 208 HOH HOH X . C 3 HOH 27 209 209 HOH HOH X . C 3 HOH 28 210 210 HOH HOH X . C 3 HOH 29 211 211 HOH HOH X . C 3 HOH 30 212 212 HOH HOH X . C 3 HOH 31 213 213 HOH HOH X . C 3 HOH 32 214 214 HOH HOH X . C 3 HOH 33 215 215 HOH HOH X . C 3 HOH 34 216 216 HOH HOH X . C 3 HOH 35 217 217 HOH HOH X . C 3 HOH 36 218 218 HOH HOH X . C 3 HOH 37 219 219 HOH HOH X . C 3 HOH 38 220 220 HOH HOH X . C 3 HOH 39 221 221 HOH HOH X . C 3 HOH 40 222 222 HOH HOH X . C 3 HOH 41 223 223 HOH HOH X . C 3 HOH 42 224 224 HOH HOH X . C 3 HOH 43 225 225 HOH HOH X . C 3 HOH 44 226 226 HOH HOH X . C 3 HOH 45 227 227 HOH HOH X . C 3 HOH 46 228 228 HOH HOH X . C 3 HOH 47 229 229 HOH HOH X . C 3 HOH 48 230 230 HOH HOH X . C 3 HOH 49 231 231 HOH HOH X . C 3 HOH 50 232 232 HOH HOH X . C 3 HOH 51 233 233 HOH HOH X . C 3 HOH 52 234 234 HOH HOH X . C 3 HOH 53 236 236 HOH HOH X . C 3 HOH 54 237 237 HOH HOH X . C 3 HOH 55 238 238 HOH HOH X . C 3 HOH 56 239 239 HOH HOH X . C 3 HOH 57 240 240 HOH HOH X . C 3 HOH 58 241 241 HOH HOH X . C 3 HOH 59 242 242 HOH HOH X . C 3 HOH 60 243 243 HOH HOH X . C 3 HOH 61 244 244 HOH HOH X . C 3 HOH 62 245 245 HOH HOH X . C 3 HOH 63 246 246 HOH HOH X . C 3 HOH 64 248 248 HOH HOH X . C 3 HOH 65 249 249 HOH HOH X . C 3 HOH 66 250 250 HOH HOH X . C 3 HOH 67 251 251 HOH HOH X . C 3 HOH 68 252 252 HOH HOH X . C 3 HOH 69 253 253 HOH HOH X . C 3 HOH 70 254 254 HOH HOH X . C 3 HOH 71 255 255 HOH HOH X . C 3 HOH 72 256 256 HOH HOH X . C 3 HOH 73 257 257 HOH HOH X . C 3 HOH 74 258 258 HOH HOH X . C 3 HOH 75 259 259 HOH HOH X . C 3 HOH 76 260 260 HOH HOH X . C 3 HOH 77 261 261 HOH HOH X . C 3 HOH 78 262 262 HOH HOH X . C 3 HOH 79 263 263 HOH HOH X . C 3 HOH 80 264 264 HOH HOH X . C 3 HOH 81 265 265 HOH HOH X . C 3 HOH 82 266 266 HOH HOH X . C 3 HOH 83 267 267 HOH HOH X . C 3 HOH 84 268 268 HOH HOH X . C 3 HOH 85 269 269 HOH HOH X . C 3 HOH 86 270 270 HOH HOH X . C 3 HOH 87 271 271 HOH HOH X . C 3 HOH 88 272 272 HOH HOH X . C 3 HOH 89 273 273 HOH HOH X . C 3 HOH 90 274 274 HOH HOH X . C 3 HOH 91 275 275 HOH HOH X . C 3 HOH 92 276 276 HOH HOH X . C 3 HOH 93 277 277 HOH HOH X . C 3 HOH 94 278 278 HOH HOH X . C 3 HOH 95 279 279 HOH HOH X . C 3 HOH 96 280 280 HOH HOH X . C 3 HOH 97 281 281 HOH HOH X . C 3 HOH 98 282 282 HOH HOH X . C 3 HOH 99 283 283 HOH HOH X . C 3 HOH 100 284 284 HOH HOH X . C 3 HOH 101 285 285 HOH HOH X . C 3 HOH 102 286 286 HOH HOH X . C 3 HOH 103 287 287 HOH HOH X . C 3 HOH 104 288 288 HOH HOH X . C 3 HOH 105 289 289 HOH HOH X . C 3 HOH 106 290 290 HOH HOH X . C 3 HOH 107 291 291 HOH HOH X . C 3 HOH 108 292 292 HOH HOH X . C 3 HOH 109 293 293 HOH HOH X . C 3 HOH 110 294 294 HOH HOH X . C 3 HOH 111 295 295 HOH HOH X . C 3 HOH 112 296 296 HOH HOH X . C 3 HOH 113 298 298 HOH HOH X . C 3 HOH 114 299 299 HOH HOH X . C 3 HOH 115 300 300 HOH HOH X . C 3 HOH 116 301 301 HOH HOH X . C 3 HOH 117 302 302 HOH HOH X . C 3 HOH 118 303 303 HOH HOH X . C 3 HOH 119 304 304 HOH HOH X . C 3 HOH 120 305 305 HOH HOH X . C 3 HOH 121 306 306 HOH HOH X . C 3 HOH 122 307 307 HOH HOH X . C 3 HOH 123 308 308 HOH HOH X . C 3 HOH 124 310 310 HOH HOH X . C 3 HOH 125 311 311 HOH HOH X . C 3 HOH 126 312 312 HOH HOH X . C 3 HOH 127 313 313 HOH HOH X . C 3 HOH 128 314 314 HOH HOH X . C 3 HOH 129 315 315 HOH HOH X . C 3 HOH 130 316 316 HOH HOH X . C 3 HOH 131 317 317 HOH HOH X . C 3 HOH 132 318 318 HOH HOH X . C 3 HOH 133 319 319 HOH HOH X . C 3 HOH 134 320 320 HOH HOH X . C 3 HOH 135 321 321 HOH HOH X . C 3 HOH 136 322 322 HOH HOH X . C 3 HOH 137 323 323 HOH HOH X . C 3 HOH 138 324 324 HOH HOH X . C 3 HOH 139 325 325 HOH HOH X . C 3 HOH 140 326 326 HOH HOH X . C 3 HOH 141 327 327 HOH HOH X . C 3 HOH 142 328 328 HOH HOH X . C 3 HOH 143 329 329 HOH HOH X . C 3 HOH 144 330 330 HOH HOH X . C 3 HOH 145 331 331 HOH HOH X . C 3 HOH 146 332 332 HOH HOH X . C 3 HOH 147 333 333 HOH HOH X . C 3 HOH 148 334 334 HOH HOH X . C 3 HOH 149 336 336 HOH HOH X . C 3 HOH 150 337 337 HOH HOH X . C 3 HOH 151 338 338 HOH HOH X . C 3 HOH 152 340 340 HOH HOH X . C 3 HOH 153 341 341 HOH HOH X . C 3 HOH 154 342 342 HOH HOH X . C 3 HOH 155 343 343 HOH HOH X . C 3 HOH 156 344 344 HOH HOH X . C 3 HOH 157 345 345 HOH HOH X . C 3 HOH 158 346 346 HOH HOH X . C 3 HOH 159 347 347 HOH HOH X . C 3 HOH 160 348 348 HOH HOH X . C 3 HOH 161 349 349 HOH HOH X . C 3 HOH 162 350 350 HOH HOH X . C 3 HOH 163 351 351 HOH HOH X . C 3 HOH 164 352 352 HOH HOH X . C 3 HOH 165 353 353 HOH HOH X . C 3 HOH 166 354 354 HOH HOH X . C 3 HOH 167 355 355 HOH HOH X . C 3 HOH 168 356 356 HOH HOH X . C 3 HOH 169 357 357 HOH HOH X . C 3 HOH 170 358 358 HOH HOH X . C 3 HOH 171 359 359 HOH HOH X . C 3 HOH 172 360 360 HOH HOH X . C 3 HOH 173 361 361 HOH HOH X . C 3 HOH 174 362 362 HOH HOH X . C 3 HOH 175 363 363 HOH HOH X . C 3 HOH 176 364 364 HOH HOH X . C 3 HOH 177 365 365 HOH HOH X . C 3 HOH 178 366 366 HOH HOH X . C 3 HOH 179 367 367 HOH HOH X . C 3 HOH 180 368 368 HOH HOH X . C 3 HOH 181 369 369 HOH HOH X . C 3 HOH 182 371 371 HOH HOH X . C 3 HOH 183 372 372 HOH HOH X . C 3 HOH 184 373 373 HOH HOH X . C 3 HOH 185 374 374 HOH HOH X . C 3 HOH 186 375 375 HOH HOH X . C 3 HOH 187 376 376 HOH HOH X . C 3 HOH 188 377 377 HOH HOH X . C 3 HOH 189 378 378 HOH HOH X . C 3 HOH 190 380 380 HOH HOH X . C 3 HOH 191 381 381 HOH HOH X . C 3 HOH 192 382 382 HOH HOH X . C 3 HOH 193 383 383 HOH HOH X . C 3 HOH 194 384 384 HOH HOH X . C 3 HOH 195 385 385 HOH HOH X . C 3 HOH 196 386 386 HOH HOH X . C 3 HOH 197 387 387 HOH HOH X . C 3 HOH 198 388 388 HOH HOH X . C 3 HOH 199 389 389 HOH HOH X . C 3 HOH 200 390 390 HOH HOH X . C 3 HOH 201 391 391 HOH HOH X . C 3 HOH 202 392 392 HOH HOH X . C 3 HOH 203 393 393 HOH HOH X . C 3 HOH 204 394 394 HOH HOH X . C 3 HOH 205 395 395 HOH HOH X . C 3 HOH 206 396 396 HOH HOH X . C 3 HOH 207 397 397 HOH HOH X . C 3 HOH 208 398 398 HOH HOH X . C 3 HOH 209 399 399 HOH HOH X . C 3 HOH 210 400 400 HOH HOH X . C 3 HOH 211 401 401 HOH HOH X . C 3 HOH 212 404 404 HOH HOH X . C 3 HOH 213 405 405 HOH HOH X . C 3 HOH 214 406 406 HOH HOH X . C 3 HOH 215 407 407 HOH HOH X . C 3 HOH 216 408 408 HOH HOH X . C 3 HOH 217 409 409 HOH HOH X . C 3 HOH 218 410 410 HOH HOH X . C 3 HOH 219 411 411 HOH HOH X . C 3 HOH 220 412 412 HOH HOH X . C 3 HOH 221 413 413 HOH HOH X . C 3 HOH 222 414 414 HOH HOH X . C 3 HOH 223 415 415 HOH HOH X . C 3 HOH 224 416 416 HOH HOH X . C 3 HOH 225 417 417 HOH HOH X . C 3 HOH 226 418 418 HOH HOH X . C 3 HOH 227 419 419 HOH HOH X . C 3 HOH 228 420 420 HOH HOH X . C 3 HOH 229 421 421 HOH HOH X . C 3 HOH 230 422 422 HOH HOH X . C 3 HOH 231 423 423 HOH HOH X . C 3 HOH 232 424 424 HOH HOH X . C 3 HOH 233 425 425 HOH HOH X . C 3 HOH 234 426 426 HOH HOH X . C 3 HOH 235 428 428 HOH HOH X . C 3 HOH 236 429 429 HOH HOH X . C 3 HOH 237 430 430 HOH HOH X . C 3 HOH 238 431 431 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal StructureStudio 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0044 ? 3 d*TREK 'data reduction' . ? 4 d*TREK 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3HPC _pdbx_entry_details.sequence_details ;THE ORIGINAL CONSTRUCT CONTAINED RESIDUES 1-180. THE FINAL CRYSTALLIZED PROTEIN CONSTRUCT SPANS FROM RESIDUES 20 TO 180 DUE TO NON-SPECIFIC CLEAVAGE BY THROMBIN PROTEASE ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 X _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 142 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 X _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 420 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X ARG 175 ? A ARG 156 2 1 Y 1 X ARG 176 ? A ARG 157 3 1 Y 1 X LYS 177 ? A LYS 158 4 1 Y 1 X ASN 178 ? A ASN 159 5 1 Y 1 X THR 179 ? A THR 160 6 1 Y 1 X LYS 180 ? A LYS 161 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 GLN N N N N 75 GLN CA C N S 76 GLN C C N N 77 GLN O O N N 78 GLN CB C N N 79 GLN CG C N N 80 GLN CD C N N 81 GLN OE1 O N N 82 GLN NE2 N N N 83 GLN OXT O N N 84 GLN H H N N 85 GLN H2 H N N 86 GLN HA H N N 87 GLN HB2 H N N 88 GLN HB3 H N N 89 GLN HG2 H N N 90 GLN HG3 H N N 91 GLN HE21 H N N 92 GLN HE22 H N N 93 GLN HXT H N N 94 GLU N N N N 95 GLU CA C N S 96 GLU C C N N 97 GLU O O N N 98 GLU CB C N N 99 GLU CG C N N 100 GLU CD C N N 101 GLU OE1 O N N 102 GLU OE2 O N N 103 GLU OXT O N N 104 GLU H H N N 105 GLU H2 H N N 106 GLU HA H N N 107 GLU HB2 H N N 108 GLU HB3 H N N 109 GLU HG2 H N N 110 GLU HG3 H N N 111 GLU HE2 H N N 112 GLU HXT H N N 113 GLY N N N N 114 GLY CA C N N 115 GLY C C N N 116 GLY O O N N 117 GLY OXT O N N 118 GLY H H N N 119 GLY H2 H N N 120 GLY HA2 H N N 121 GLY HA3 H N N 122 GLY HXT H N N 123 HIS N N N N 124 HIS CA C N S 125 HIS C C N N 126 HIS O O N N 127 HIS CB C N N 128 HIS CG C Y N 129 HIS ND1 N Y N 130 HIS CD2 C Y N 131 HIS CE1 C Y N 132 HIS NE2 N Y N 133 HIS OXT O N N 134 HIS H H N N 135 HIS H2 H N N 136 HIS HA H N N 137 HIS HB2 H N N 138 HIS HB3 H N N 139 HIS HD1 H N N 140 HIS HD2 H N N 141 HIS HE1 H N N 142 HIS HE2 H N N 143 HIS HXT H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 ILE N N N N 148 ILE CA C N S 149 ILE C C N N 150 ILE O O N N 151 ILE CB C N S 152 ILE CG1 C N N 153 ILE CG2 C N N 154 ILE CD1 C N N 155 ILE OXT O N N 156 ILE H H N N 157 ILE H2 H N N 158 ILE HA H N N 159 ILE HB H N N 160 ILE HG12 H N N 161 ILE HG13 H N N 162 ILE HG21 H N N 163 ILE HG22 H N N 164 ILE HG23 H N N 165 ILE HD11 H N N 166 ILE HD12 H N N 167 ILE HD13 H N N 168 ILE HXT H N N 169 LEU N N N N 170 LEU CA C N S 171 LEU C C N N 172 LEU O O N N 173 LEU CB C N N 174 LEU CG C N N 175 LEU CD1 C N N 176 LEU CD2 C N N 177 LEU OXT O N N 178 LEU H H N N 179 LEU H2 H N N 180 LEU HA H N N 181 LEU HB2 H N N 182 LEU HB3 H N N 183 LEU HG H N N 184 LEU HD11 H N N 185 LEU HD12 H N N 186 LEU HD13 H N N 187 LEU HD21 H N N 188 LEU HD22 H N N 189 LEU HD23 H N N 190 LEU HXT H N N 191 LYS N N N N 192 LYS CA C N S 193 LYS C C N N 194 LYS O O N N 195 LYS CB C N N 196 LYS CG C N N 197 LYS CD C N N 198 LYS CE C N N 199 LYS NZ N N N 200 LYS OXT O N N 201 LYS H H N N 202 LYS H2 H N N 203 LYS HA H N N 204 LYS HB2 H N N 205 LYS HB3 H N N 206 LYS HG2 H N N 207 LYS HG3 H N N 208 LYS HD2 H N N 209 LYS HD3 H N N 210 LYS HE2 H N N 211 LYS HE3 H N N 212 LYS HZ1 H N N 213 LYS HZ2 H N N 214 LYS HZ3 H N N 215 LYS HXT H N N 216 MET N N N N 217 MET CA C N S 218 MET C C N N 219 MET O O N N 220 MET CB C N N 221 MET CG C N N 222 MET SD S N N 223 MET CE C N N 224 MET OXT O N N 225 MET H H N N 226 MET H2 H N N 227 MET HA H N N 228 MET HB2 H N N 229 MET HB3 H N N 230 MET HG2 H N N 231 MET HG3 H N N 232 MET HE1 H N N 233 MET HE2 H N N 234 MET HE3 H N N 235 MET HXT H N N 236 PHE N N N N 237 PHE CA C N S 238 PHE C C N N 239 PHE O O N N 240 PHE CB C N N 241 PHE CG C Y N 242 PHE CD1 C Y N 243 PHE CD2 C Y N 244 PHE CE1 C Y N 245 PHE CE2 C Y N 246 PHE CZ C Y N 247 PHE OXT O N N 248 PHE H H N N 249 PHE H2 H N N 250 PHE HA H N N 251 PHE HB2 H N N 252 PHE HB3 H N N 253 PHE HD1 H N N 254 PHE HD2 H N N 255 PHE HE1 H N N 256 PHE HE2 H N N 257 PHE HZ H N N 258 PHE HXT H N N 259 PRO N N N N 260 PRO CA C N S 261 PRO C C N N 262 PRO O O N N 263 PRO CB C N N 264 PRO CG C N N 265 PRO CD C N N 266 PRO OXT O N N 267 PRO H H N N 268 PRO HA H N N 269 PRO HB2 H N N 270 PRO HB3 H N N 271 PRO HG2 H N N 272 PRO HG3 H N N 273 PRO HD2 H N N 274 PRO HD3 H N N 275 PRO HXT H N N 276 SER N N N N 277 SER CA C N S 278 SER C C N N 279 SER O O N N 280 SER CB C N N 281 SER OG O N N 282 SER OXT O N N 283 SER H H N N 284 SER H2 H N N 285 SER HA H N N 286 SER HB2 H N N 287 SER HB3 H N N 288 SER HG H N N 289 SER HXT H N N 290 THR N N N N 291 THR CA C N S 292 THR C C N N 293 THR O O N N 294 THR CB C N R 295 THR OG1 O N N 296 THR CG2 C N N 297 THR OXT O N N 298 THR H H N N 299 THR H2 H N N 300 THR HA H N N 301 THR HB H N N 302 THR HG1 H N N 303 THR HG21 H N N 304 THR HG22 H N N 305 THR HG23 H N N 306 THR HXT H N N 307 TRP N N N N 308 TRP CA C N S 309 TRP C C N N 310 TRP O O N N 311 TRP CB C N N 312 TRP CG C Y N 313 TRP CD1 C Y N 314 TRP CD2 C Y N 315 TRP NE1 N Y N 316 TRP CE2 C Y N 317 TRP CE3 C Y N 318 TRP CZ2 C Y N 319 TRP CZ3 C Y N 320 TRP CH2 C Y N 321 TRP OXT O N N 322 TRP H H N N 323 TRP H2 H N N 324 TRP HA H N N 325 TRP HB2 H N N 326 TRP HB3 H N N 327 TRP HD1 H N N 328 TRP HE1 H N N 329 TRP HE3 H N N 330 TRP HZ2 H N N 331 TRP HZ3 H N N 332 TRP HH2 H N N 333 TRP HXT H N N 334 TYR N N N N 335 TYR CA C N S 336 TYR C C N N 337 TYR O O N N 338 TYR CB C N N 339 TYR CG C Y N 340 TYR CD1 C Y N 341 TYR CD2 C Y N 342 TYR CE1 C Y N 343 TYR CE2 C Y N 344 TYR CZ C Y N 345 TYR OH O N N 346 TYR OXT O N N 347 TYR H H N N 348 TYR H2 H N N 349 TYR HA H N N 350 TYR HB2 H N N 351 TYR HB3 H N N 352 TYR HD1 H N N 353 TYR HD2 H N N 354 TYR HE1 H N N 355 TYR HE2 H N N 356 TYR HH H N N 357 TYR HXT H N N 358 VAL N N N N 359 VAL CA C N S 360 VAL C C N N 361 VAL O O N N 362 VAL CB C N N 363 VAL CG1 C N N 364 VAL CG2 C N N 365 VAL OXT O N N 366 VAL H H N N 367 VAL H2 H N N 368 VAL HA H N N 369 VAL HB H N N 370 VAL HG11 H N N 371 VAL HG12 H N N 372 VAL HG13 H N N 373 VAL HG21 H N N 374 VAL HG22 H N N 375 VAL HG23 H N N 376 VAL HXT H N N 377 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3HPB _pdbx_initial_refinement_model.details ? #