HEADER ISOMERASE 04-JUN-09 3HPF TITLE CRYSTAL STRUCTURE OF THE MUTANT Y90F OF DIVERGENT GALACTARATE TITLE 2 DEHYDRATASE FROM OCEANOBACILLUS IHEYENSIS COMPLEXED WITH MG AND TITLE 3 GALACTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUCONATE CYCLOISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCEANOBACILLUS IHEYENSIS HTE831; SOURCE 3 ORGANISM_TAXID: 221109; SOURCE 4 STRAIN: DSM 14371, JCM 11309, KCTC 3954, HTE831; SOURCE 5 GENE: OB2843; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GALACTARATE DEHYDRATASE, GALACTARATE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,J.F.RAKUS,J.A.GERLT,S.C.ALMO REVDAT 4 06-SEP-23 3HPF 1 REMARK REVDAT 3 13-OCT-21 3HPF 1 SEQADV REVDAT 2 10-FEB-21 3HPF 1 JRNL REMARK LINK REVDAT 1 22-DEC-09 3HPF 0 JRNL AUTH J.F.RAKUS,C.KALYANARAMAN,A.A.FEDOROV,E.V.FEDOROV, JRNL AUTH 2 F.P.MILLS-GRONINGER,R.TORO,J.BONANNO,K.BAIN,J.M.SAUDER, JRNL AUTH 3 S.K.BURLEY,S.C.ALMO,M.P.JACOBSON,J.A.GERLT JRNL TITL COMPUTATION-FACILITATED ASSIGNMENT OF THE FUNCTION IN THE JRNL TITL 2 ENOLASE SUPERFAMILY: A REGIOCHEMICALLY DISTINCT GALACTARATE JRNL TITL 3 DEHYDRATASE FROM OCEANOBACILLUS IHEYENSIS . JRNL REF BIOCHEMISTRY V. 48 11546 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19883118 JRNL DOI 10.1021/BI901731C REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2192282.810 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 79510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3991 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7342 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 382 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6192 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 488 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.710 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.150 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.680 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.060 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.030 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 43.36 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GLT_PAR.TXT REMARK 3 PARAMETER FILE 5 : &_1_PARAMETER_INFILE_5 REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GLT_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 5 : &_1_TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79510 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 3ES7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M TRIS-HCL, 0.2M REMARK 280 NACL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.98300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.98300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.08250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.98300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.98300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.08250 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 59.98300 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 59.98300 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 61.08250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 59.98300 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 59.98300 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 61.08250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 89300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -119.96600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 119.96600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 119.96600 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -119.96600 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 388 REMARK 465 THR A 389 REMARK 465 LYS A 390 REMARK 465 SER A 391 REMARK 465 ASP B 388 REMARK 465 THR B 389 REMARK 465 LYS B 390 REMARK 465 SER B 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 83.68 40.68 REMARK 500 PHE A 90 40.14 -102.12 REMARK 500 HIS A 196 18.27 59.67 REMARK 500 THR A 211 9.32 -66.96 REMARK 500 LEU A 215 69.72 -102.51 REMARK 500 GLN A 298 84.21 74.10 REMARK 500 ASP A 371 -165.17 -162.51 REMARK 500 ASP B 42 83.69 37.88 REMARK 500 LEU B 48 49.75 -80.11 REMARK 500 PHE B 90 40.97 -105.70 REMARK 500 LEU B 215 69.47 -102.05 REMARK 500 GLN B 298 86.03 76.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42 OD1 REMARK 620 2 HIS A 45 NE2 91.3 REMARK 620 3 THR A 297 O 92.8 175.3 REMARK 620 4 THR A 297 OG1 109.7 92.3 84.2 REMARK 620 5 GAE A 411 O1A 87.0 99.4 83.0 159.5 REMARK 620 6 GAE A 411 O2 158.9 84.3 92.6 91.2 73.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 193 OD2 REMARK 620 2 GLU A 221 OE1 83.6 REMARK 620 3 HIS A 246 NE2 173.8 90.6 REMARK 620 4 HOH A 397 O 87.3 116.9 93.5 REMARK 620 5 GAE A 411 O6A 94.6 98.3 88.3 144.7 REMARK 620 6 GAE A 411 O6B 97.9 156.8 88.3 86.3 58.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 42 OD1 REMARK 620 2 HIS B 45 NE2 88.1 REMARK 620 3 THR B 297 O 96.4 174.8 REMARK 620 4 THR B 297 OG1 109.3 92.7 83.2 REMARK 620 5 GAE B 411 O1A 89.2 100.2 82.6 157.8 REMARK 620 6 GAE B 411 O2 160.7 87.3 89.4 89.7 73.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 193 OD2 REMARK 620 2 GLU B 221 OE1 83.4 REMARK 620 3 HIS B 246 NE2 172.0 90.6 REMARK 620 4 HOH B 404 O 83.6 114.5 94.1 REMARK 620 5 GAE B 411 O6A 100.8 97.5 85.2 148.1 REMARK 620 6 GAE B 411 O6B 98.1 158.3 89.4 87.2 60.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAE A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAE B 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FYY RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT LIGAND REMARK 900 RELATED ID: 3ES7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MALATE DBREF 3HPF A 1 391 UNP Q8EMJ9 Q8EMJ9_OCEIH 1 391 DBREF 3HPF B 1 391 UNP Q8EMJ9 Q8EMJ9_OCEIH 1 391 SEQADV 3HPF PHE A 90 UNP Q8EMJ9 TYR 90 ENGINEERED MUTATION SEQADV 3HPF PHE B 90 UNP Q8EMJ9 TYR 90 ENGINEERED MUTATION SEQRES 1 A 391 MET LYS ILE THR ASP LEU GLU LEU HIS ALA VAL GLY ILE SEQRES 2 A 391 PRO ARG HIS THR GLY PHE VAL ASN LYS HIS VAL ILE VAL SEQRES 3 A 391 LYS ILE HIS THR ASP GLU GLY LEU THR GLY ILE GLY GLU SEQRES 4 A 391 MET SER ASP PHE SER HIS LEU PRO LEU TYR SER VAL ASP SEQRES 5 A 391 LEU HIS ASP LEU LYS GLN GLY LEU LEU SER ILE LEU LEU SEQRES 6 A 391 GLY GLN ASN PRO PHE ASP LEU MET LYS ILE ASN LYS GLU SEQRES 7 A 391 LEU THR ASP ASN PHE PRO GLU THR MET TYR TYR PHE GLU SEQRES 8 A 391 LYS GLY SER PHE ILE ARG ASN GLY ILE ASP ASN ALA LEU SEQRES 9 A 391 HIS ASP LEU CYS ALA LYS TYR LEU ASP ILE SER VAL SER SEQRES 10 A 391 ASP PHE LEU GLY GLY ARG VAL LYS GLU LYS ILE LYS VAL SEQRES 11 A 391 CYS TYR PRO ILE PHE ARG HIS ARG PHE SER GLU GLU VAL SEQRES 12 A 391 GLU SER ASN LEU ASP VAL VAL ARG GLN LYS LEU GLU GLN SEQRES 13 A 391 GLY PHE ASP VAL PHE ARG LEU TYR VAL GLY LYS ASN LEU SEQRES 14 A 391 ASP ALA ASP GLU GLU PHE LEU SER ARG VAL LYS GLU GLU SEQRES 15 A 391 PHE GLY SER ARG VAL ARG ILE LYS SER TYR ASP PHE SER SEQRES 16 A 391 HIS LEU LEU ASN TRP LYS ASP ALA HIS ARG ALA ILE LYS SEQRES 17 A 391 ARG LEU THR LYS TYR ASP LEU GLY LEU GLU MET ILE GLU SEQRES 18 A 391 SER PRO ALA PRO ARG ASN ASP PHE ASP GLY LEU TYR GLN SEQRES 19 A 391 LEU ARG LEU LYS THR ASP TYR PRO ILE SER GLU HIS VAL SEQRES 20 A 391 TRP SER PHE LYS GLN GLN GLN GLU MET ILE LYS LYS ASP SEQRES 21 A 391 ALA ILE ASP ILE PHE ASN ILE SER PRO VAL PHE ILE GLY SEQRES 22 A 391 GLY LEU THR SER ALA LYS LYS ALA ALA TYR ALA ALA GLU SEQRES 23 A 391 VAL ALA SER LYS ASP VAL VAL LEU GLY THR THR GLN GLU SEQRES 24 A 391 LEU SER VAL GLY THR ALA ALA MET ALA HIS LEU GLY CYS SEQRES 25 A 391 SER LEU THR ASN ILE ASN HIS THR SER ASP PRO THR GLY SEQRES 26 A 391 PRO GLU LEU TYR VAL GLY ASP VAL VAL LYS ASN ARG VAL SEQRES 27 A 391 THR TYR LYS ASP GLY TYR LEU TYR ALA PRO ASP ARG SER SEQRES 28 A 391 VAL LYS GLY LEU GLY ILE GLU LEU ASP GLU SER LEU LEU SEQRES 29 A 391 ALA LYS TYR GLN VAL PRO ASP LEU SER TRP ASP ASN VAL SEQRES 30 A 391 THR VAL HIS GLN LEU GLN ASP ARG THR ALA ASP THR LYS SEQRES 31 A 391 SER SEQRES 1 B 391 MET LYS ILE THR ASP LEU GLU LEU HIS ALA VAL GLY ILE SEQRES 2 B 391 PRO ARG HIS THR GLY PHE VAL ASN LYS HIS VAL ILE VAL SEQRES 3 B 391 LYS ILE HIS THR ASP GLU GLY LEU THR GLY ILE GLY GLU SEQRES 4 B 391 MET SER ASP PHE SER HIS LEU PRO LEU TYR SER VAL ASP SEQRES 5 B 391 LEU HIS ASP LEU LYS GLN GLY LEU LEU SER ILE LEU LEU SEQRES 6 B 391 GLY GLN ASN PRO PHE ASP LEU MET LYS ILE ASN LYS GLU SEQRES 7 B 391 LEU THR ASP ASN PHE PRO GLU THR MET TYR TYR PHE GLU SEQRES 8 B 391 LYS GLY SER PHE ILE ARG ASN GLY ILE ASP ASN ALA LEU SEQRES 9 B 391 HIS ASP LEU CYS ALA LYS TYR LEU ASP ILE SER VAL SER SEQRES 10 B 391 ASP PHE LEU GLY GLY ARG VAL LYS GLU LYS ILE LYS VAL SEQRES 11 B 391 CYS TYR PRO ILE PHE ARG HIS ARG PHE SER GLU GLU VAL SEQRES 12 B 391 GLU SER ASN LEU ASP VAL VAL ARG GLN LYS LEU GLU GLN SEQRES 13 B 391 GLY PHE ASP VAL PHE ARG LEU TYR VAL GLY LYS ASN LEU SEQRES 14 B 391 ASP ALA ASP GLU GLU PHE LEU SER ARG VAL LYS GLU GLU SEQRES 15 B 391 PHE GLY SER ARG VAL ARG ILE LYS SER TYR ASP PHE SER SEQRES 16 B 391 HIS LEU LEU ASN TRP LYS ASP ALA HIS ARG ALA ILE LYS SEQRES 17 B 391 ARG LEU THR LYS TYR ASP LEU GLY LEU GLU MET ILE GLU SEQRES 18 B 391 SER PRO ALA PRO ARG ASN ASP PHE ASP GLY LEU TYR GLN SEQRES 19 B 391 LEU ARG LEU LYS THR ASP TYR PRO ILE SER GLU HIS VAL SEQRES 20 B 391 TRP SER PHE LYS GLN GLN GLN GLU MET ILE LYS LYS ASP SEQRES 21 B 391 ALA ILE ASP ILE PHE ASN ILE SER PRO VAL PHE ILE GLY SEQRES 22 B 391 GLY LEU THR SER ALA LYS LYS ALA ALA TYR ALA ALA GLU SEQRES 23 B 391 VAL ALA SER LYS ASP VAL VAL LEU GLY THR THR GLN GLU SEQRES 24 B 391 LEU SER VAL GLY THR ALA ALA MET ALA HIS LEU GLY CYS SEQRES 25 B 391 SER LEU THR ASN ILE ASN HIS THR SER ASP PRO THR GLY SEQRES 26 B 391 PRO GLU LEU TYR VAL GLY ASP VAL VAL LYS ASN ARG VAL SEQRES 27 B 391 THR TYR LYS ASP GLY TYR LEU TYR ALA PRO ASP ARG SER SEQRES 28 B 391 VAL LYS GLY LEU GLY ILE GLU LEU ASP GLU SER LEU LEU SEQRES 29 B 391 ALA LYS TYR GLN VAL PRO ASP LEU SER TRP ASP ASN VAL SEQRES 30 B 391 THR VAL HIS GLN LEU GLN ASP ARG THR ALA ASP THR LYS SEQRES 31 B 391 SER HET GAE A 411 14 HET MG A 401 1 HET MG A 402 1 HET GAE B 411 14 HET MG B 401 1 HET MG B 402 1 HETNAM GAE D-GALACTARIC ACID HETNAM MG MAGNESIUM ION FORMUL 3 GAE 2(C6 H10 O8) FORMUL 4 MG 4(MG 2+) FORMUL 9 HOH *488(H2 O) HELIX 1 1 ASP A 52 LEU A 65 1 14 HELIX 2 2 ASP A 71 PHE A 83 1 13 HELIX 3 3 GLU A 91 ASP A 113 1 23 HELIX 4 4 SER A 115 LEU A 120 5 6 HELIX 5 5 PHE A 139 GLU A 141 5 3 HELIX 6 6 GLU A 142 GLY A 157 1 16 HELIX 7 7 ASN A 168 GLY A 184 1 17 HELIX 8 8 ASN A 199 THR A 211 1 13 HELIX 9 9 ASP A 228 THR A 239 1 12 HELIX 10 10 SER A 249 LYS A 259 1 11 HELIX 11 11 SER A 268 GLY A 273 1 6 HELIX 12 12 GLY A 274 ALA A 288 1 15 HELIX 13 13 LEU A 300 CYS A 312 1 13 HELIX 14 14 THR A 324 TYR A 329 1 6 HELIX 15 15 ASP A 360 TYR A 367 1 8 HELIX 16 16 THR A 378 ARG A 385 1 8 HELIX 17 17 ASP B 52 LEU B 65 1 14 HELIX 18 18 ASP B 71 PHE B 83 1 13 HELIX 19 19 GLU B 91 ASP B 113 1 23 HELIX 20 20 SER B 115 LEU B 120 1 6 HELIX 21 21 PHE B 139 GLU B 141 5 3 HELIX 22 22 GLU B 142 GLN B 156 1 15 HELIX 23 23 ASN B 168 GLY B 184 1 17 HELIX 24 24 ASN B 199 THR B 211 1 13 HELIX 25 25 ASP B 228 THR B 239 1 12 HELIX 26 26 SER B 249 LYS B 259 1 11 HELIX 27 27 SER B 268 GLY B 273 1 6 HELIX 28 28 GLY B 274 ALA B 288 1 15 HELIX 29 29 LEU B 300 CYS B 312 1 13 HELIX 30 30 THR B 324 TYR B 329 1 6 HELIX 31 31 ASP B 360 TYR B 367 1 8 HELIX 32 32 THR B 378 ARG B 385 1 8 SHEET 1 A 3 ILE A 3 PRO A 14 0 SHEET 2 A 3 VAL A 20 THR A 30 -1 O ILE A 25 N HIS A 9 SHEET 3 A 3 THR A 35 MET A 40 -1 O MET A 40 N VAL A 24 SHEET 1 B 3 LYS A 127 LYS A 129 0 SHEET 2 B 3 TYR A 344 TYR A 346 -1 O LEU A 345 N ILE A 128 SHEET 3 B 3 TYR A 340 LYS A 341 -1 N LYS A 341 O TYR A 344 SHEET 1 C 7 TYR A 132 ILE A 134 0 SHEET 2 C 7 VAL A 160 TYR A 164 1 O ARG A 162 N ILE A 134 SHEET 3 C 7 ARG A 188 ASP A 193 1 O SER A 191 N LEU A 163 SHEET 4 C 7 MET A 219 GLU A 221 1 O GLU A 221 N TYR A 192 SHEET 5 C 7 ILE A 243 HIS A 246 1 O SER A 244 N ILE A 220 SHEET 6 C 7 ILE A 264 ILE A 267 1 O ASN A 266 N GLU A 245 SHEET 7 C 7 ASP A 291 LEU A 294 1 O ASP A 291 N PHE A 265 SHEET 1 D 3 ILE B 3 PRO B 14 0 SHEET 2 D 3 VAL B 20 THR B 30 -1 O ILE B 25 N HIS B 9 SHEET 3 D 3 GLY B 36 MET B 40 -1 O MET B 40 N VAL B 24 SHEET 1 E 3 LYS B 127 LYS B 129 0 SHEET 2 E 3 TYR B 344 TYR B 346 -1 O LEU B 345 N ILE B 128 SHEET 3 E 3 TYR B 340 LYS B 341 -1 N LYS B 341 O TYR B 344 SHEET 1 F 7 TYR B 132 ILE B 134 0 SHEET 2 F 7 VAL B 160 TYR B 164 1 O ARG B 162 N ILE B 134 SHEET 3 F 7 ARG B 188 ASP B 193 1 O SER B 191 N LEU B 163 SHEET 4 F 7 MET B 219 GLU B 221 1 O GLU B 221 N TYR B 192 SHEET 5 F 7 ILE B 243 HIS B 246 1 O SER B 244 N ILE B 220 SHEET 6 F 7 ILE B 264 ILE B 267 1 O ASN B 266 N GLU B 245 SHEET 7 F 7 ASP B 291 LEU B 294 1 O ASP B 291 N PHE B 265 LINK OD1 ASP A 42 MG MG A 402 1555 1555 2.08 LINK NE2 HIS A 45 MG MG A 402 1555 1555 2.26 LINK OD2 ASP A 193 MG MG A 401 1555 1555 2.25 LINK OE1 GLU A 221 MG MG A 401 1555 1555 2.04 LINK NE2 HIS A 246 MG MG A 401 1555 1555 2.09 LINK O THR A 297 MG MG A 402 1555 1555 2.20 LINK OG1 THR A 297 MG MG A 402 1555 1555 2.09 LINK O HOH A 397 MG MG A 401 1555 1555 2.13 LINK MG MG A 401 O6A GAE A 411 1555 1555 2.19 LINK MG MG A 401 O6B GAE A 411 1555 1555 2.36 LINK MG MG A 402 O1A GAE A 411 1555 1555 2.22 LINK MG MG A 402 O2 GAE A 411 1555 1555 2.14 LINK OD1 ASP B 42 MG MG B 402 1555 1555 2.09 LINK NE2 HIS B 45 MG MG B 402 1555 1555 2.26 LINK OD2 ASP B 193 MG MG B 401 1555 1555 2.13 LINK OE1 GLU B 221 MG MG B 401 1555 1555 2.12 LINK NE2 HIS B 246 MG MG B 401 1555 1555 2.20 LINK O THR B 297 MG MG B 402 1555 1555 2.22 LINK OG1 THR B 297 MG MG B 402 1555 1555 2.15 LINK MG MG B 401 O HOH B 404 1555 1555 2.13 LINK MG MG B 401 O6A GAE B 411 1555 1555 2.17 LINK MG MG B 401 O6B GAE B 411 1555 1555 2.24 LINK MG MG B 402 O1A GAE B 411 1555 1555 2.24 LINK MG MG B 402 O2 GAE B 411 1555 1555 2.15 CISPEP 1 LEU A 46 PRO A 47 0 0.16 CISPEP 2 LEU B 46 PRO B 47 0 0.32 SITE 1 AC1 21 ARG A 15 ASP A 42 HIS A 45 TYR A 89 SITE 2 AC1 21 ARG A 162 TYR A 164 ASP A 193 GLU A 221 SITE 3 AC1 21 HIS A 246 PHE A 271 THR A 296 THR A 297 SITE 4 AC1 21 GLN A 298 ARG A 385 HOH A 397 HOH A 398 SITE 5 AC1 21 MG A 401 MG A 402 HOH A 518 HOH A 536 SITE 6 AC1 21 HOH A 597 SITE 1 AC2 5 ASP A 193 GLU A 221 HIS A 246 HOH A 397 SITE 2 AC2 5 GAE A 411 SITE 1 AC3 4 ASP A 42 HIS A 45 THR A 297 GAE A 411 SITE 1 AC4 21 ARG B 15 ASP B 42 HIS B 45 TYR B 89 SITE 2 AC4 21 ARG B 162 TYR B 164 ASP B 193 GLU B 221 SITE 3 AC4 21 HIS B 246 PHE B 271 THR B 296 THR B 297 SITE 4 AC4 21 GLN B 298 ARG B 385 MG B 401 MG B 402 SITE 5 AC4 21 HOH B 404 HOH B 451 HOH B 537 HOH B 595 SITE 6 AC4 21 HOH B 611 SITE 1 AC5 5 ASP B 193 GLU B 221 HIS B 246 HOH B 404 SITE 2 AC5 5 GAE B 411 SITE 1 AC6 4 ASP B 42 HIS B 45 THR B 297 GAE B 411 CRYST1 119.966 119.966 122.165 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008336 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008186 0.00000