HEADER TRANSFERASE 08-JUN-09 3HQN TITLE APO CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA(LMPYK)PYRUVATE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE KINASE; COMPND 3 CHAIN: D, A; COMPND 4 SYNONYM: PK; COMPND 5 EC: 2.7.1.40; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 STRAIN: NHOM/B2/84/BEL46; SOURCE 5 GENE: PYK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A_LMPYK KEYWDS TIM BARREL, T-STATE ENZYME, TRANSFERASE, ALLOSTERIC ENZYME, ATP- KEYWDS 2 BINDING, GLYCOLYSIS, KINASE, MAGNESIUM, METAL-BINDING, NUCLEOTIDE- KEYWDS 3 BINDING, PYRUVATE EXPDTA X-RAY DIFFRACTION AUTHOR H.P.MORGAN,M.D.WALKINSHAW REVDAT 5 01-NOV-23 3HQN 1 REMARK LINK REVDAT 4 13-JUL-11 3HQN 1 VERSN REVDAT 3 28-APR-10 3HQN 1 JRNL REVDAT 2 23-FEB-10 3HQN 1 JRNL REMARK REVDAT 1 16-FEB-10 3HQN 0 JRNL AUTH H.P.MORGAN,I.W.MCNAE,M.W.NOWICKI,V.HANNAERT,P.A.M.MICHELS, JRNL AUTH 2 L.A.FOTHERGILL-GILMORE,M.D.WALKINSHAW JRNL TITL THE ALLOSTERIC MECHANISM OF PRYUVATE KINASE FROM LEISHMANIA JRNL TITL 2 MEXICANA: A ROCK AND LOCK MODEL JRNL REF J.BIOL.CHEM. V. 285 12892 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20123988 JRNL DOI 10.1074/JBC.M109.079905 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 85394 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6257 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 325 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 734 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.714 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6895 ; 0.029 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9331 ; 2.052 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 891 ; 6.264 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;38.592 ;24.641 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1202 ;15.957 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;22.089 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1084 ; 0.181 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5150 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4405 ; 1.313 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7116 ; 2.225 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2490 ; 4.036 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2211 ; 6.457 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1794 38.3615 34.1589 REMARK 3 T TENSOR REMARK 3 T11: 0.1173 T22: 0.0697 REMARK 3 T33: 0.0726 T12: -0.0517 REMARK 3 T13: -0.0196 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.4241 L22: 1.2101 REMARK 3 L33: 0.2854 L12: -0.1898 REMARK 3 L13: -0.1809 L23: 0.3368 REMARK 3 S TENSOR REMARK 3 S11: 0.0567 S12: -0.0170 S13: 0.0971 REMARK 3 S21: 0.1003 S22: -0.0787 S23: 0.0439 REMARK 3 S31: -0.0398 S32: 0.0456 S33: 0.0219 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 367 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9150 28.5922 42.7427 REMARK 3 T TENSOR REMARK 3 T11: 0.1626 T22: 0.1002 REMARK 3 T33: 0.0331 T12: -0.0688 REMARK 3 T13: -0.0194 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.5198 L22: 1.4498 REMARK 3 L33: 0.0743 L12: -0.0883 REMARK 3 L13: 0.0208 L23: 0.1010 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: -0.0660 S13: 0.0654 REMARK 3 S21: 0.2805 S22: -0.0788 S23: -0.0404 REMARK 3 S31: -0.0048 S32: 0.0320 S33: 0.0193 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 368 A 498 REMARK 3 ORIGIN FOR THE GROUP (A): -6.2296 28.2179 31.9736 REMARK 3 T TENSOR REMARK 3 T11: 0.0602 T22: 0.0604 REMARK 3 T33: 0.0949 T12: -0.0304 REMARK 3 T13: 0.0099 T23: -0.0436 REMARK 3 L TENSOR REMARK 3 L11: 1.5106 L22: 1.0043 REMARK 3 L33: 0.4662 L12: 0.8440 REMARK 3 L13: 0.0662 L23: 0.0203 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: 0.0209 S13: 0.2764 REMARK 3 S21: 0.0666 S22: -0.0647 S23: 0.2043 REMARK 3 S31: 0.0058 S32: -0.0348 S33: 0.0480 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 87 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8476 3.4505 31.0091 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.1263 REMARK 3 T33: 0.1741 T12: -0.0490 REMARK 3 T13: -0.0860 T23: 0.0864 REMARK 3 L TENSOR REMARK 3 L11: 0.6079 L22: 1.5259 REMARK 3 L33: 0.4446 L12: -0.5821 REMARK 3 L13: -0.3211 L23: 0.3159 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: -0.0850 S13: 0.0611 REMARK 3 S21: 0.1882 S22: -0.0455 S23: -0.4013 REMARK 3 S31: -0.0429 S32: 0.1340 S33: 0.0744 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 88 D 184 REMARK 3 ORIGIN FOR THE GROUP (A): 39.6540 28.7380 2.4376 REMARK 3 T TENSOR REMARK 3 T11: 0.5537 T22: 0.2085 REMARK 3 T33: 0.1608 T12: 0.0091 REMARK 3 T13: 0.1342 T23: 0.1429 REMARK 3 L TENSOR REMARK 3 L11: 2.3466 L22: 8.4182 REMARK 3 L33: 3.6635 L12: 2.9174 REMARK 3 L13: -0.7761 L23: -2.8737 REMARK 3 S TENSOR REMARK 3 S11: 0.1009 S12: 0.0097 S13: -0.1171 REMARK 3 S21: 0.8583 S22: -0.0754 S23: -0.3259 REMARK 3 S31: -0.7255 S32: 0.0803 S33: -0.0254 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 185 D 464 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7939 0.6830 25.1994 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: 0.0840 REMARK 3 T33: 0.0574 T12: -0.0195 REMARK 3 T13: -0.0158 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 0.3410 L22: 0.8994 REMARK 3 L33: 0.4464 L12: -0.1879 REMARK 3 L13: -0.0650 L23: -0.0420 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: -0.0038 S13: -0.0290 REMARK 3 S21: -0.0093 S22: -0.0665 S23: -0.1714 REMARK 3 S31: -0.0136 S32: 0.0322 S33: 0.0487 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 465 D 498 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4910 -16.9321 39.0702 REMARK 3 T TENSOR REMARK 3 T11: 0.0943 T22: 0.1911 REMARK 3 T33: 0.2882 T12: 0.0348 REMARK 3 T13: 0.0330 T23: 0.1935 REMARK 3 L TENSOR REMARK 3 L11: 3.6215 L22: 3.5967 REMARK 3 L33: 2.5234 L12: 2.0842 REMARK 3 L13: 2.8293 L23: 1.2369 REMARK 3 S TENSOR REMARK 3 S11: 0.1673 S12: -0.0470 S13: -0.5449 REMARK 3 S21: 0.2392 S22: 0.0043 S23: -0.4546 REMARK 3 S31: 0.1834 S32: 0.1637 S33: -0.1716 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DNA REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89910 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 52.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PKL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-16% PEG8000, 20MM TRIETHANOLAMINE REMARK 280 -HCL, 50MM MGCL2, 100MM KCL, 10-15% GLYCEROL, PH7.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.28950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 83.66650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.09950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.28950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 83.66650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.09950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.28950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 83.66650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.09950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.28950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 83.66650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.09950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 73700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 788 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 0 REMARK 465 LYS D 484 REMARK 465 VAL D 485 REMARK 465 LYS D 486 REMARK 465 GLY D 487 REMARK 465 TYR D 488 REMARK 465 MET A 0 REMARK 465 ASP A 482 REMARK 465 HIS A 483 REMARK 465 LYS A 484 REMARK 465 VAL A 485 REMARK 465 LYS A 486 REMARK 465 GLY A 487 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 88 CD REMARK 480 ILE A 89 C REMARK 480 ARG A 90 C O CG CZ REMARK 480 GLY A 92 C REMARK 480 GLN A 93 N CB CD NE2 REMARK 480 PHE A 94 CG CE1 CE2 REMARK 480 VAL A 95 CB REMARK 480 GLY A 96 N C REMARK 480 GLY A 97 C REMARK 480 ASP A 98 C CG REMARK 480 ALA A 99 O REMARK 480 VAL A 100 N C CB REMARK 480 MET A 101 CB CE REMARK 480 GLU A 102 CA CD OE2 REMARK 480 ARG A 103 C REMARK 480 GLY A 104 C REMARK 480 ALA A 105 N C O REMARK 480 THR A 106 CG2 REMARK 480 CYS A 107 CA SG REMARK 480 TYR A 108 CG REMARK 480 VAL A 109 N CA O CG1 CG2 REMARK 480 THR A 110 CB REMARK 480 THR A 111 N REMARK 480 ASP A 112 CA O CG REMARK 480 PRO A 113 CB CD REMARK 480 ALA A 114 C REMARK 480 PHE A 115 N C CB REMARK 480 ALA A 116 CA REMARK 480 ASP A 117 C CB CG OD2 REMARK 480 GLY A 119 N CA REMARK 480 LYS A 121 N C CD REMARK 480 ASP A 122 CA C CG REMARK 480 LYS A 123 CA REMARK 480 PHE A 124 N C CG REMARK 480 TYR A 125 N CA C CD2 REMARK 480 ASP A 127 CA REMARK 480 GLN A 129 NE2 REMARK 480 ASN A 130 CB OD1 REMARK 480 LEU A 131 CA CD1 REMARK 480 LYS A 133 O NZ REMARK 480 VAL A 134 N CA O CG1 REMARK 480 VAL A 135 CA REMARK 480 PRO A 137 N CG REMARK 480 GLY A 138 C REMARK 480 ASN A 139 N C REMARK 480 TYR A 140 N O CG REMARK 480 ILE A 141 CD1 REMARK 480 TYR A 142 O CB CD1 CE1 REMARK 480 ILE A 143 CA REMARK 480 ASP A 144 OD1 REMARK 480 ASP A 145 CA CG REMARK 480 GLY A 146 C O REMARK 480 LEU A 148 N O CG REMARK 480 ILE A 149 C REMARK 480 LEU A 150 C REMARK 480 GLN A 151 N C O REMARK 480 VAL A 152 N C REMARK 480 GLN A 153 N C O CD OE1 REMARK 480 GLU A 158 C REMARK 480 LEU A 161 CD1 REMARK 480 GLU A 162 CD REMARK 480 CYS A 163 C SG REMARK 480 THR A 164 C REMARK 480 VAL A 165 C REMARK 480 THR A 166 C REMARK 480 ASN A 167 C REMARK 480 SER A 168 CB REMARK 480 HIS A 169 CG CE1 REMARK 480 THR A 170 CA REMARK 480 ILE A 171 N C CB REMARK 480 SER A 172 N CB REMARK 480 ASP A 173 C REMARK 480 ARG A 174 C CG REMARK 480 ARG A 175 CA CZ REMARK 480 GLY A 176 C REMARK 480 ASN A 178 CA O CG REMARK 480 LEU A 179 CB REMARK 480 GLY A 181 N REMARK 480 ASP A 183 CG OD2 REMARK 480 PRO A 187 C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 116 O HOH A 693 1.78 REMARK 500 CB SER A 383 O HOH A 811 1.90 REMARK 500 O HOH D 778 O HOH D 862 2.13 REMARK 500 O HOH D 545 O HOH D 822 2.18 REMARK 500 O HOH D 635 O HOH A 535 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS D 446 OE1 GLN A 69 7545 1.83 REMARK 500 CE LYS D 446 O HOH A 825 7545 2.03 REMARK 500 NZ LYS D 446 O HOH A 825 7545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER D 1 N SER D 1 CA 0.175 REMARK 500 TYR D 18 CE1 TYR D 18 CZ 0.081 REMARK 500 GLU D 378 CB GLU D 378 CG -0.127 REMARK 500 SER A 1 N SER A 1 CA 0.154 REMARK 500 GLY A 86 C PRO A 87 N 0.147 REMARK 500 SER A 383 CB SER A 383 OG -0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 185 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG D 223 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 LEU D 281 CB - CG - CD2 ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG D 348 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG D 413 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 VAL A 34 CG1 - CB - CG2 ANGL. DEV. = 10.8 DEGREES REMARK 500 HIS A 169 CB - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG A 348 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS D 118 38.93 -152.30 REMARK 500 ASP D 144 73.09 58.99 REMARK 500 HIS D 169 132.09 -178.64 REMARK 500 LEU D 186 151.99 -47.52 REMARK 500 THR D 296 140.82 74.96 REMARK 500 SER D 330 -105.94 -112.20 REMARK 500 ASN D 415 38.42 -96.17 REMARK 500 LYS D 453 -5.04 77.13 REMARK 500 GLN D 491 136.47 179.18 REMARK 500 ALA A 99 109.62 -162.11 REMARK 500 LYS A 118 53.96 -148.13 REMARK 500 ASP A 144 70.92 57.58 REMARK 500 HIS A 169 156.24 176.99 REMARK 500 THR A 296 147.03 70.15 REMARK 500 SER A 330 -102.20 -112.48 REMARK 500 ASN A 415 37.26 -99.79 REMARK 500 LYS A 453 -7.58 77.72 REMARK 500 GLN A 491 139.32 171.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 503 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN D 51 OD1 REMARK 620 2 SER D 53 OG 67.4 REMARK 620 3 ASP D 83 OD1 111.3 174.7 REMARK 620 4 THR D 84 O 132.1 99.1 77.9 REMARK 620 5 GOL D 499 O3 136.0 70.4 111.9 66.5 REMARK 620 6 HOH D 873 O 92.3 97.0 88.1 135.5 80.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 502 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN D 354 O REMARK 620 2 LEU D 357 O 84.2 REMARK 620 3 GLU D 359 OE1 84.9 86.6 REMARK 620 4 GLU D 359 OE2 122.1 71.4 43.4 REMARK 620 5 HOH D 872 O 109.5 87.0 163.5 120.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 502 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 51 OD1 REMARK 620 2 SER A 53 OG 75.5 REMARK 620 3 ASP A 83 OD1 109.7 168.0 REMARK 620 4 THR A 84 O 132.4 99.1 69.3 REMARK 620 5 HOH A 678 O 145.5 73.7 103.5 68.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 354 O REMARK 620 2 LEU A 357 O 88.2 REMARK 620 3 GLU A 359 OE1 86.4 83.8 REMARK 620 4 GLU A 359 OE2 129.1 71.1 46.7 REMARK 620 5 HOH A 681 O 155.8 81.8 114.1 67.9 REMARK 620 6 HOH A 797 O 107.1 87.2 163.6 117.2 50.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K D 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E0V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PYRUVATE KINASE FROM LEISHMANIA MEXICANA: REMARK 900 SULFATE IONS REMOVED BY BACK-SOAKING REMARK 900 RELATED ID: 3E0W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PYRUVATE KINASE FROM LEISHMANIA MEXICANA IN REMARK 900 COMPLEX WITH SULFATE IONS REMARK 900 RELATED ID: 1PKL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PYRUVATE KINASE FROM LEISHMANIA MEXICANA, REMARK 900 CRYSTALLIZED UNDER ACIDIC CONDITIONS REMARK 900 RELATED ID: 3HQO RELATED DB: PDB REMARK 900 RELATED ID: 3HQP RELATED DB: PDB REMARK 900 RELATED ID: 3HQQ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF L. MEXICANA PYRUVATE KINASE HAS BEEN DETERMINED IN REMARK 999 THE LABORATORY OF PROF. PAUL MICHELS, PUBLISHED AND DEPOSITED IN REMARK 999 GENBANK. HOWEVER, THE SEQUENCE AS APPEARED IN GENBANK CONTAINED REMARK 999 ERRORS. THE CORRECTION HAS BEEN INFORMED TO GENBANK WITH THE REMARK 999 ACCESSION CODE X74944 AND IT WILL BE FILTRATED TO UNIPROT AT A REMARK 999 LATER TIME. DBREF 3HQN D 0 498 UNP Q27686 KPYK_LEIME 1 499 DBREF 3HQN A 0 498 UNP Q27686 KPYK_LEIME 1 499 SEQADV 3HQN SER D 382 UNP Q27686 GLY 383 SEE REMARK 999 SEQADV 3HQN TYR D 389 UNP Q27686 SER 390 SEE REMARK 999 SEQADV 3HQN ARG D 404 UNP Q27686 ALA 405 SEE REMARK 999 SEQADV 3HQN SER D 405 UNP Q27686 GLY 406 SEE REMARK 999 SEQADV 3HQN SER A 382 UNP Q27686 GLY 383 SEE REMARK 999 SEQADV 3HQN TYR A 389 UNP Q27686 SER 390 SEE REMARK 999 SEQADV 3HQN ARG A 404 UNP Q27686 ALA 405 SEE REMARK 999 SEQADV 3HQN SER A 405 UNP Q27686 GLY 406 SEE REMARK 999 SEQRES 1 D 499 MET SER GLN LEU ALA HIS ASN LEU THR LEU SER ILE PHE SEQRES 2 D 499 ASP PRO VAL ALA ASN TYR ARG ALA ALA ARG ILE ILE CYS SEQRES 3 D 499 THR ILE GLY PRO SER THR GLN SER VAL GLU ALA LEU LYS SEQRES 4 D 499 GLY LEU ILE GLN SER GLY MET SER VAL ALA ARG MET ASN SEQRES 5 D 499 PHE SER HIS GLY SER HIS GLU TYR HIS GLN THR THR ILE SEQRES 6 D 499 ASN ASN VAL ARG GLN ALA ALA ALA GLU LEU GLY VAL ASN SEQRES 7 D 499 ILE ALA ILE ALA LEU ASP THR LYS GLY PRO GLU ILE ARG SEQRES 8 D 499 THR GLY GLN PHE VAL GLY GLY ASP ALA VAL MET GLU ARG SEQRES 9 D 499 GLY ALA THR CYS TYR VAL THR THR ASP PRO ALA PHE ALA SEQRES 10 D 499 ASP LYS GLY THR LYS ASP LYS PHE TYR ILE ASP TYR GLN SEQRES 11 D 499 ASN LEU SER LYS VAL VAL ARG PRO GLY ASN TYR ILE TYR SEQRES 12 D 499 ILE ASP ASP GLY ILE LEU ILE LEU GLN VAL GLN SER HIS SEQRES 13 D 499 GLU ASP GLU GLN THR LEU GLU CYS THR VAL THR ASN SER SEQRES 14 D 499 HIS THR ILE SER ASP ARG ARG GLY VAL ASN LEU PRO GLY SEQRES 15 D 499 CYS ASP VAL ASP LEU PRO ALA VAL SER ALA LYS ASP ARG SEQRES 16 D 499 VAL ASP LEU GLN PHE GLY VAL GLU GLN GLY VAL ASP MET SEQRES 17 D 499 ILE PHE ALA SER PHE ILE ARG SER ALA GLU GLN VAL GLY SEQRES 18 D 499 ASP VAL ARG LYS ALA LEU GLY PRO LYS GLY ARG ASP ILE SEQRES 19 D 499 MET ILE ILE CYS LYS ILE GLU ASN HIS GLN GLY VAL GLN SEQRES 20 D 499 ASN ILE ASP SER ILE ILE GLU GLU SER ASP GLY ILE MET SEQRES 21 D 499 VAL ALA ARG GLY ASP LEU GLY VAL GLU ILE PRO ALA GLU SEQRES 22 D 499 LYS VAL VAL VAL ALA GLN LYS ILE LEU ILE SER LYS CYS SEQRES 23 D 499 ASN VAL ALA GLY LYS PRO VAL ILE CYS ALA THR GLN MET SEQRES 24 D 499 LEU GLU SER MET THR TYR ASN PRO ARG PRO THR ARG ALA SEQRES 25 D 499 GLU VAL SER ASP VAL ALA ASN ALA VAL PHE ASN GLY ALA SEQRES 26 D 499 ASP CYS VAL MET LEU SER GLY GLU THR ALA LYS GLY LYS SEQRES 27 D 499 TYR PRO ASN GLU VAL VAL GLN TYR MET ALA ARG ILE CYS SEQRES 28 D 499 LEU GLU ALA GLN SER ALA LEU ASN GLU TYR VAL PHE PHE SEQRES 29 D 499 ASN SER ILE LYS LYS LEU GLN HIS ILE PRO MET SER ALA SEQRES 30 D 499 ASP GLU ALA VAL CYS SER SER ALA VAL ASN SER VAL TYR SEQRES 31 D 499 GLU THR LYS ALA LYS ALA MET VAL VAL LEU SER ASN THR SEQRES 32 D 499 GLY ARG SER ALA ARG LEU VAL ALA LYS TYR ARG PRO ASN SEQRES 33 D 499 CYS PRO ILE VAL CYS VAL THR THR ARG LEU GLN THR CYS SEQRES 34 D 499 ARG GLN LEU ASN ILE THR GLN GLY VAL GLU SER VAL PHE SEQRES 35 D 499 PHE ASP ALA ASP LYS LEU GLY HIS ASP GLU GLY LYS GLU SEQRES 36 D 499 HIS ARG VAL ALA ALA GLY VAL GLU PHE ALA LYS SER LYS SEQRES 37 D 499 GLY TYR VAL GLN THR GLY ASP TYR CYS VAL VAL ILE HIS SEQRES 38 D 499 ALA ASP HIS LYS VAL LYS GLY TYR ALA ASN GLN THR ARG SEQRES 39 D 499 ILE LEU LEU VAL GLU SEQRES 1 A 499 MET SER GLN LEU ALA HIS ASN LEU THR LEU SER ILE PHE SEQRES 2 A 499 ASP PRO VAL ALA ASN TYR ARG ALA ALA ARG ILE ILE CYS SEQRES 3 A 499 THR ILE GLY PRO SER THR GLN SER VAL GLU ALA LEU LYS SEQRES 4 A 499 GLY LEU ILE GLN SER GLY MET SER VAL ALA ARG MET ASN SEQRES 5 A 499 PHE SER HIS GLY SER HIS GLU TYR HIS GLN THR THR ILE SEQRES 6 A 499 ASN ASN VAL ARG GLN ALA ALA ALA GLU LEU GLY VAL ASN SEQRES 7 A 499 ILE ALA ILE ALA LEU ASP THR LYS GLY PRO GLU ILE ARG SEQRES 8 A 499 THR GLY GLN PHE VAL GLY GLY ASP ALA VAL MET GLU ARG SEQRES 9 A 499 GLY ALA THR CYS TYR VAL THR THR ASP PRO ALA PHE ALA SEQRES 10 A 499 ASP LYS GLY THR LYS ASP LYS PHE TYR ILE ASP TYR GLN SEQRES 11 A 499 ASN LEU SER LYS VAL VAL ARG PRO GLY ASN TYR ILE TYR SEQRES 12 A 499 ILE ASP ASP GLY ILE LEU ILE LEU GLN VAL GLN SER HIS SEQRES 13 A 499 GLU ASP GLU GLN THR LEU GLU CYS THR VAL THR ASN SER SEQRES 14 A 499 HIS THR ILE SER ASP ARG ARG GLY VAL ASN LEU PRO GLY SEQRES 15 A 499 CYS ASP VAL ASP LEU PRO ALA VAL SER ALA LYS ASP ARG SEQRES 16 A 499 VAL ASP LEU GLN PHE GLY VAL GLU GLN GLY VAL ASP MET SEQRES 17 A 499 ILE PHE ALA SER PHE ILE ARG SER ALA GLU GLN VAL GLY SEQRES 18 A 499 ASP VAL ARG LYS ALA LEU GLY PRO LYS GLY ARG ASP ILE SEQRES 19 A 499 MET ILE ILE CYS LYS ILE GLU ASN HIS GLN GLY VAL GLN SEQRES 20 A 499 ASN ILE ASP SER ILE ILE GLU GLU SER ASP GLY ILE MET SEQRES 21 A 499 VAL ALA ARG GLY ASP LEU GLY VAL GLU ILE PRO ALA GLU SEQRES 22 A 499 LYS VAL VAL VAL ALA GLN LYS ILE LEU ILE SER LYS CYS SEQRES 23 A 499 ASN VAL ALA GLY LYS PRO VAL ILE CYS ALA THR GLN MET SEQRES 24 A 499 LEU GLU SER MET THR TYR ASN PRO ARG PRO THR ARG ALA SEQRES 25 A 499 GLU VAL SER ASP VAL ALA ASN ALA VAL PHE ASN GLY ALA SEQRES 26 A 499 ASP CYS VAL MET LEU SER GLY GLU THR ALA LYS GLY LYS SEQRES 27 A 499 TYR PRO ASN GLU VAL VAL GLN TYR MET ALA ARG ILE CYS SEQRES 28 A 499 LEU GLU ALA GLN SER ALA LEU ASN GLU TYR VAL PHE PHE SEQRES 29 A 499 ASN SER ILE LYS LYS LEU GLN HIS ILE PRO MET SER ALA SEQRES 30 A 499 ASP GLU ALA VAL CYS SER SER ALA VAL ASN SER VAL TYR SEQRES 31 A 499 GLU THR LYS ALA LYS ALA MET VAL VAL LEU SER ASN THR SEQRES 32 A 499 GLY ARG SER ALA ARG LEU VAL ALA LYS TYR ARG PRO ASN SEQRES 33 A 499 CYS PRO ILE VAL CYS VAL THR THR ARG LEU GLN THR CYS SEQRES 34 A 499 ARG GLN LEU ASN ILE THR GLN GLY VAL GLU SER VAL PHE SEQRES 35 A 499 PHE ASP ALA ASP LYS LEU GLY HIS ASP GLU GLY LYS GLU SEQRES 36 A 499 HIS ARG VAL ALA ALA GLY VAL GLU PHE ALA LYS SER LYS SEQRES 37 A 499 GLY TYR VAL GLN THR GLY ASP TYR CYS VAL VAL ILE HIS SEQRES 38 A 499 ALA ASP HIS LYS VAL LYS GLY TYR ALA ASN GLN THR ARG SEQRES 39 A 499 ILE LEU LEU VAL GLU HET GOL D 499 6 HET GOL D 500 6 HET SO4 D 501 5 HET K D 502 1 HET K D 503 1 HET GOL A 499 6 HET SO4 A 500 5 HET K A 501 1 HET K A 502 1 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM K POTASSIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 K 4(K 1+) FORMUL 12 HOH *734(H2 O) HELIX 1 1 SER D 1 THR D 8 1 8 HELIX 2 2 SER D 33 GLY D 44 1 12 HELIX 3 3 SER D 56 GLY D 75 1 20 HELIX 4 4 PHE D 94 GLY D 96 5 3 HELIX 5 5 ASP D 112 ALA D 116 5 5 HELIX 6 6 ASN D 130 VAL D 135 1 6 HELIX 7 7 SER D 190 GLN D 203 1 14 HELIX 8 8 SER D 215 GLY D 227 1 13 HELIX 9 9 PRO D 228 ARG D 231 5 4 HELIX 10 10 ASN D 241 ASN D 247 1 7 HELIX 11 11 ASN D 247 SER D 255 1 9 HELIX 12 12 ARG D 262 ILE D 269 1 8 HELIX 13 13 PRO D 270 GLY D 289 1 20 HELIX 14 14 LEU D 299 TYR D 304 5 6 HELIX 15 15 THR D 309 GLY D 323 1 15 HELIX 16 16 SER D 330 LYS D 335 1 6 HELIX 17 17 TYR D 338 LEU D 357 1 20 HELIX 18 18 ASN D 358 LEU D 369 1 12 HELIX 19 19 SER D 375 LYS D 392 1 18 HELIX 20 20 GLY D 403 TYR D 412 1 10 HELIX 21 21 ARG D 424 LEU D 431 1 8 HELIX 22 22 ASN D 432 THR D 434 5 3 HELIX 23 23 ASP D 443 GLY D 448 1 6 HELIX 24 24 LYS D 453 LYS D 467 1 15 HELIX 25 25 SER A 1 THR A 8 1 8 HELIX 26 26 SER A 33 GLY A 44 1 12 HELIX 27 27 SER A 56 GLY A 75 1 20 HELIX 28 28 PHE A 94 ASP A 98 5 5 HELIX 29 29 ASP A 112 ALA A 116 5 5 HELIX 30 30 ASN A 130 VAL A 135 1 6 HELIX 31 31 SER A 190 GLY A 204 1 15 HELIX 32 32 ALA A 216 GLY A 227 1 12 HELIX 33 33 PRO A 228 ARG A 231 5 4 HELIX 34 34 ASN A 241 ASN A 247 1 7 HELIX 35 35 ASN A 247 SER A 255 1 9 HELIX 36 36 ARG A 262 ILE A 269 1 8 HELIX 37 37 PRO A 270 GLY A 289 1 20 HELIX 38 38 LEU A 299 TYR A 304 5 6 HELIX 39 39 THR A 309 GLY A 323 1 15 HELIX 40 40 SER A 330 LYS A 335 1 6 HELIX 41 41 TYR A 338 LEU A 357 1 20 HELIX 42 42 ASN A 358 LEU A 369 1 12 HELIX 43 43 SER A 375 LYS A 392 1 18 HELIX 44 44 GLY A 403 TYR A 412 1 10 HELIX 45 45 ARG A 424 LEU A 431 1 8 HELIX 46 46 ASN A 432 THR A 434 5 3 HELIX 47 47 ASP A 443 GLY A 448 1 6 HELIX 48 48 LYS A 453 LYS A 467 1 15 SHEET 1 A 9 ARG D 22 ILE D 27 0 SHEET 2 A 9 MET D 45 ASN D 51 1 O VAL D 47 N CYS D 25 SHEET 3 A 9 ALA D 79 ASP D 83 1 O ALA D 79 N ALA D 48 SHEET 4 A 9 MET D 207 ALA D 210 1 O PHE D 209 N LEU D 82 SHEET 5 A 9 MET D 234 ILE D 239 1 O ILE D 236 N ILE D 208 SHEET 6 A 9 GLY D 257 ALA D 261 1 O MET D 259 N CYS D 237 SHEET 7 A 9 VAL D 292 ALA D 295 1 O ILE D 293 N VAL D 260 SHEET 8 A 9 CYS D 326 LEU D 329 1 O CYS D 326 N CYS D 294 SHEET 9 A 9 ARG D 22 ILE D 27 1 N ILE D 24 O VAL D 327 SHEET 1 B 2 ASP D 98 MET D 101 0 SHEET 2 B 2 HIS D 169 SER D 172 -1 O HIS D 169 N MET D 101 SHEET 1 C 6 LYS D 123 TYR D 125 0 SHEET 2 C 6 THR D 106 THR D 110 1 N THR D 110 O PHE D 124 SHEET 3 C 6 THR D 160 VAL D 165 -1 O CYS D 163 N CYS D 107 SHEET 4 C 6 LEU D 148 ASP D 157 -1 N GLN D 151 O THR D 164 SHEET 5 C 6 TYR D 140 ILE D 143 -1 N ILE D 141 O LEU D 150 SHEET 6 C 6 VAL D 177 ASN D 178 -1 O ASN D 178 N TYR D 142 SHEET 1 D 5 VAL D 437 PHE D 441 0 SHEET 2 D 5 ILE D 418 THR D 422 1 N CYS D 420 O GLU D 438 SHEET 3 D 5 ALA D 395 LEU D 399 1 N VAL D 398 O VAL D 419 SHEET 4 D 5 TYR D 475 ALA D 481 1 O ILE D 479 N VAL D 397 SHEET 5 D 5 ASN D 490 LEU D 496 -1 O LEU D 495 N CYS D 476 SHEET 1 E 9 ARG A 22 THR A 26 0 SHEET 2 E 9 MET A 45 ASN A 51 1 O ARG A 49 N CYS A 25 SHEET 3 E 9 ALA A 79 ASP A 83 1 O ALA A 81 N MET A 50 SHEET 4 E 9 MET A 207 ALA A 210 1 O PHE A 209 N LEU A 82 SHEET 5 E 9 MET A 234 ILE A 239 1 O ILE A 236 N ILE A 208 SHEET 6 E 9 GLY A 257 ALA A 261 1 O MET A 259 N CYS A 237 SHEET 7 E 9 VAL A 292 ALA A 295 1 O ILE A 293 N VAL A 260 SHEET 8 E 9 CYS A 326 LEU A 329 1 O CYS A 326 N CYS A 294 SHEET 9 E 9 ARG A 22 THR A 26 1 N ILE A 24 O LEU A 329 SHEET 1 F 2 VAL A 100 MET A 101 0 SHEET 2 F 2 HIS A 169 THR A 170 -1 O HIS A 169 N MET A 101 SHEET 1 G 6 LYS A 123 TYR A 125 0 SHEET 2 G 6 THR A 106 THR A 110 1 N THR A 110 O PHE A 124 SHEET 3 G 6 THR A 160 VAL A 165 -1 O CYS A 163 N CYS A 107 SHEET 4 G 6 LEU A 148 ASP A 157 -1 N SER A 154 O GLU A 162 SHEET 5 G 6 TYR A 140 ILE A 143 -1 N ILE A 141 O LEU A 150 SHEET 6 G 6 VAL A 177 ASN A 178 -1 O ASN A 178 N TYR A 142 SHEET 1 H 5 VAL A 437 PHE A 441 0 SHEET 2 H 5 ILE A 418 THR A 422 1 N CYS A 420 O VAL A 440 SHEET 3 H 5 ALA A 395 LEU A 399 1 N MET A 396 O VAL A 419 SHEET 4 H 5 TYR A 475 HIS A 480 1 O VAL A 477 N VAL A 397 SHEET 5 H 5 GLN A 491 LEU A 496 -1 O ARG A 493 N VAL A 478 LINK OD1 ASN D 51 K K D 503 1555 1555 2.80 LINK OG SER D 53 K K D 503 1555 1555 2.87 LINK OD1 ASP D 83 K K D 503 1555 1555 2.77 LINK O THR D 84 K K D 503 1555 1555 2.82 LINK O GLN D 354 K K D 502 1555 1555 2.68 LINK O LEU D 357 K K D 502 1555 1555 2.68 LINK OE1 GLU D 359 K K D 502 1555 1555 2.93 LINK OE2 GLU D 359 K K D 502 1555 1555 3.08 LINK O3 GOL D 499 K K D 503 1555 1555 3.00 LINK K K D 502 O HOH D 872 1555 1555 2.73 LINK K K D 503 O HOH D 873 1555 1555 3.07 LINK OD1 ASN A 51 K K A 502 1555 1555 2.72 LINK OG SER A 53 K K A 502 1555 1555 2.89 LINK OD1 ASP A 83 K K A 502 1555 1555 2.82 LINK O THR A 84 K K A 502 1555 1555 2.88 LINK O GLN A 354 K K A 501 1555 1555 2.66 LINK O LEU A 357 K K A 501 1555 1555 2.80 LINK OE1AGLU A 359 K K A 501 1555 1555 2.70 LINK OE2AGLU A 359 K K A 501 1555 1555 2.95 LINK K K A 501 O HOH A 681 1555 1555 2.84 LINK K K A 501 O HOH A 797 1555 1555 2.94 LINK K K A 502 O HOH A 678 1555 1555 2.78 CISPEP 1 ILE D 372 PRO D 373 0 4.39 CISPEP 2 ILE A 372 PRO A 373 0 3.03 SITE 1 AC1 9 SER D 53 THR D 84 LYS D 85 SER D 211 SITE 2 AC1 9 LYS D 238 GLU D 240 K D 503 HOH D 782 SITE 3 AC1 9 HOH D 873 SITE 1 AC2 5 ASP D 232 ARG D 424 GLN D 426 THR D 427 SITE 2 AC2 5 GLN D 430 SITE 1 AC3 11 SER D 400 ASN D 401 THR D 402 ARG D 404 SITE 2 AC3 11 SER D 405 ASP D 482 HIS D 483 HOH D 619 SITE 3 AC3 11 HOH D 724 HOH D 801 HOH D 883 SITE 1 AC4 4 GLN D 354 LEU D 357 GLU D 359 HOH D 872 SITE 1 AC5 7 ASN D 51 SER D 53 ASP D 83 THR D 84 SITE 2 AC5 7 LYS D 238 GOL D 499 HOH D 873 SITE 1 AC6 8 GLU A 438 SER A 439 PHE A 463 HOH A 667 SITE 2 AC6 8 HOH A 724 HOH A 732 HOH A 734 HOH A 746 SITE 1 AC7 7 SER A 400 ASN A 401 THR A 402 ARG A 404 SITE 2 AC7 7 SER A 405 HOH A 815 HOH A 830 SITE 1 AC8 5 GLN A 354 LEU A 357 GLU A 359 HOH A 681 SITE 2 AC8 5 HOH A 797 SITE 1 AC9 5 ASN A 51 SER A 53 ASP A 83 THR A 84 SITE 2 AC9 5 HOH A 678 CRYST1 120.579 167.333 132.199 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008293 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007564 0.00000