HEADER LIGASE 09-JUN-09 3HRJ OBSLTE 19-JAN-10 3HRJ 3LC0 TITLE HISTIDYL-TRNA SYNTHETASE FROM TRYPANOSOMA CRUZI (HISTIDINE TITLE 2 COMPLEX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 45-478; COMPND 5 EC: 6.1.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 GENE: TC00.1047053507019.40; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS TRNA-LIGASE, AMINOACYL-TRNA SYNTHETASE, LIGASE, STRUCTURAL KEYWDS 2 GENOMICS, MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC KEYWDS 3 PROTOZOA, MSGPP EXPDTA X-RAY DIFFRACTION AUTHOR T.ARAKAKI,E.A.MERRITT,E.T.LARSON REVDAT 2 19-JAN-10 3HRJ 1 OBSLTE REVDAT 1 01-DEC-09 3HRJ 0 JRNL AUTH E.A.MERRITT,T.ARAKAKI,E.T.LARSON,A.NAPULI, JRNL AUTH 2 N.MUELLER,W.C.VAN VOORHIS,F.S.BUCKNER,E.FAN, JRNL AUTH 3 F.ZUCKER,L.M.J.VERLINDE,J.KIM,W.G.J.HOL JRNL TITL CRYSTAL STRUCTURE OF TRYPANOSOMAL HISTIDYL-TRNA JRNL TITL 2 SYNTHETASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0096 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.5 REMARK 3 NUMBER OF REFLECTIONS : 21773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1140 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 678 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 37.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.329 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.204 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3311 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2261 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4498 ; 1.138 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5492 ; 0.843 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 5.980 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;34.866 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 554 ;15.370 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.717 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3707 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 691 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2066 ; 0.386 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 838 ; 0.075 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3329 ; 0.716 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1245 ; 1.169 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1165 ; 1.933 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): -17.8510 -2.4950 -21.4830 REMARK 3 T TENSOR REMARK 3 T11: 0.1950 T22: 0.0958 REMARK 3 T33: 0.2285 T12: -0.0686 REMARK 3 T13: -0.1214 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.6144 L22: 1.2815 REMARK 3 L33: 5.4639 L12: -0.2377 REMARK 3 L13: -0.6667 L23: -0.5665 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: -0.0680 S13: 0.0634 REMARK 3 S21: 0.1078 S22: -0.1328 S23: -0.1955 REMARK 3 S31: -0.7517 S32: 0.4705 S33: 0.1807 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): -22.9220 16.8350 -12.3970 REMARK 3 T TENSOR REMARK 3 T11: 1.1032 T22: 0.1101 REMARK 3 T33: 0.7443 T12: 0.1667 REMARK 3 T13: -0.0960 T23: -0.1739 REMARK 3 L TENSOR REMARK 3 L11: 0.6844 L22: 5.6243 REMARK 3 L33: 15.9441 L12: 1.9535 REMARK 3 L13: 3.2881 L23: 9.4597 REMARK 3 S TENSOR REMARK 3 S11: -0.2520 S12: -0.2525 S13: 0.2083 REMARK 3 S21: -1.0292 S22: -0.6117 S23: 0.4215 REMARK 3 S31: -1.8900 S32: -1.1924 S33: 0.8638 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): -21.4590 0.5790 -4.8230 REMARK 3 T TENSOR REMARK 3 T11: 0.1891 T22: 0.0547 REMARK 3 T33: 0.1379 T12: 0.0272 REMARK 3 T13: -0.1214 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 1.6915 L22: 1.5722 REMARK 3 L33: 3.6710 L12: -0.1142 REMARK 3 L13: 0.0464 L23: 0.5386 REMARK 3 S TENSOR REMARK 3 S11: -0.1638 S12: -0.2990 S13: 0.1669 REMARK 3 S21: 0.0040 S22: 0.0056 S23: 0.1215 REMARK 3 S31: -0.5581 S32: -0.0257 S33: 0.1581 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 289 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6390 3.9660 13.5760 REMARK 3 T TENSOR REMARK 3 T11: 0.4609 T22: 0.4630 REMARK 3 T33: 0.2980 T12: 0.0496 REMARK 3 T13: -0.2409 T23: -0.2857 REMARK 3 L TENSOR REMARK 3 L11: 7.6412 L22: 10.4309 REMARK 3 L33: 4.6606 L12: 0.5554 REMARK 3 L13: 2.0008 L23: -2.5481 REMARK 3 S TENSOR REMARK 3 S11: -0.2833 S12: -1.3517 S13: 0.6717 REMARK 3 S21: 1.0720 S22: -0.0356 S23: -0.7999 REMARK 3 S31: -0.7113 S32: -0.0235 S33: 0.3189 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 290 A 379 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0990 -3.8690 -2.3300 REMARK 3 T TENSOR REMARK 3 T11: 0.1562 T22: 0.1115 REMARK 3 T33: 0.1422 T12: -0.0180 REMARK 3 T13: -0.1195 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 3.3177 L22: 1.1301 REMARK 3 L33: 2.5896 L12: -0.6320 REMARK 3 L13: 0.1767 L23: 0.4256 REMARK 3 S TENSOR REMARK 3 S11: -0.0822 S12: -0.2567 S13: 0.2158 REMARK 3 S21: 0.0900 S22: 0.0198 S23: -0.0209 REMARK 3 S31: -0.2659 S32: 0.3544 S33: 0.0624 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 380 A 478 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0840 -24.2510 -48.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.2016 T22: 0.0549 REMARK 3 T33: 0.1991 T12: 0.0342 REMARK 3 T13: 0.0165 T23: -0.0502 REMARK 3 L TENSOR REMARK 3 L11: 4.4843 L22: 2.6734 REMARK 3 L33: 5.2836 L12: -0.1141 REMARK 3 L13: 0.6693 L23: -0.8773 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: 0.3305 S13: -0.4154 REMARK 3 S21: -0.2482 S22: -0.1024 S23: -0.2528 REMARK 3 S31: 0.6848 S32: 0.3567 S33: 0.1460 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3HRJ COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB053495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 724 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21784 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 18.421 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.7 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 6.3960 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : 0.29800 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 1WU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 26% PEG REMARK 280 3350, 0.1 M BIS/TRIS PH 5.5, 1MM TCEP, 10 MM L-HISTIDINE, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.12000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.73900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.12000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.73900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -45.11587 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -48.49142 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 MET A -1 REMARK 465 GLN A 45 REMARK 465 LYS A 46 REMARK 465 ASN A 47 REMARK 465 MET A 48 REMARK 465 GLU A 158 REMARK 465 ALA A 159 REMARK 465 ILE A 160 REMARK 465 THR A 161 REMARK 465 ARG A 162 REMARK 465 GLY A 163 REMARK 465 ARG A 164 REMARK 465 ARG A 456 REMARK 465 GLU A 457 REMARK 465 GLY A 458 REMARK 465 THR A 459 REMARK 465 GLY A 460 REMARK 465 LYS A 461 REMARK 465 GLU A 462 REMARK 465 GLU A 463 REMARK 465 GLY A 464 REMARK 465 GLY A 465 REMARK 465 ALA A 466 REMARK 465 GLU A 467 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 157 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 203 CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 ILE A 242 CG1 CG2 CD1 REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 279 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 468 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 55 -65.98 -22.68 REMARK 500 GLN A 109 56.14 -95.58 REMARK 500 PHE A 111 71.66 -103.73 REMARK 500 LYS A 116 -79.10 40.36 REMARK 500 HIS A 119 133.95 170.77 REMARK 500 ARG A 120 130.28 -32.19 REMARK 500 ALA A 222 -79.07 170.92 REMARK 500 THR A 225 -109.30 -111.04 REMARK 500 ASP A 227 -49.60 -20.13 REMARK 500 LYS A 241 -53.65 162.99 REMARK 500 ARG A 314 154.40 75.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 573 DISTANCE = 8.06 ANGSTROMS REMARK 525 HOH A 600 DISTANCE = 6.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HRI RELATED DB: PDB REMARK 900 T BRUCEI HISRS(APO) REMARK 900 RELATED ID: 3HRK RELATED DB: PDB REMARK 900 T BRUCEI HISRS (HISTIDYL-ADENYLATE COMPLEX) DBREF 3HRJ A 45 478 UNP Q4DA54 Q4DA54_TRYCR 45 478 SEQADV 3HRJ GLY A -5 UNP Q4DA54 EXPRESSION TAG SEQADV 3HRJ PRO A -4 UNP Q4DA54 EXPRESSION TAG SEQADV 3HRJ GLY A -3 UNP Q4DA54 EXPRESSION TAG SEQADV 3HRJ SER A -2 UNP Q4DA54 EXPRESSION TAG SEQADV 3HRJ MET A -1 UNP Q4DA54 EXPRESSION TAG SEQRES 1 A 439 GLY PRO GLY SER MET GLN LYS ASN MET VAL GLU THR GLU SEQRES 2 A 439 PRO VAL GLN GLY CYS ARG ASP PHE PRO PRO GLU ALA MET SEQRES 3 A 439 ARG CYS ARG ARG HIS LEU PHE ASP VAL PHE HIS ALA THR SEQRES 4 A 439 ALA LYS THR PHE GLY PHE GLU GLU TYR ASP ALA PRO VAL SEQRES 5 A 439 LEU GLU SER GLU GLU LEU TYR ILE ARG LYS ALA GLY GLU SEQRES 6 A 439 GLU ILE THR GLU GLN MET PHE ASN PHE ILE THR LYS GLY SEQRES 7 A 439 GLY HIS ARG VAL ALA LEU ARG PRO GLU MET THR PRO SER SEQRES 8 A 439 LEU ALA ARG LEU LEU LEU GLY LYS GLY ARG SER LEU LEU SEQRES 9 A 439 LEU PRO ALA LYS TRP TYR SER ILE PRO GLN CYS TRP ARG SEQRES 10 A 439 TYR GLU ALA ILE THR ARG GLY ARG ARG ARG GLU HIS TYR SEQRES 11 A 439 GLN TRP ASN MET ASP ILE VAL GLY VAL LYS SER VAL SER SEQRES 12 A 439 ALA GLU VAL GLU LEU VAL CYS ALA ALA CYS TRP ALA MET SEQRES 13 A 439 ARG SER LEU GLY LEU SER SER LYS ASP VAL GLY ILE LYS SEQRES 14 A 439 VAL ASN SER ARG LYS VAL LEU GLN THR VAL VAL GLU GLN SEQRES 15 A 439 ALA GLY VAL THR SER ASP LYS PHE ALA PRO VAL CYS VAL SEQRES 16 A 439 ILE VAL ASP LYS MET GLU LYS ILE PRO ARG GLU GLU VAL SEQRES 17 A 439 GLU ALA GLN LEU ALA VAL LEU GLY LEU GLU PRO THR VAL SEQRES 18 A 439 VAL ASP ALA ILE THR THR THR LEU SER LEU LYS SER ILE SEQRES 19 A 439 ASP GLU ILE ALA GLN ARG VAL GLY GLU GLU HIS GLU ALA SEQRES 20 A 439 VAL LYS GLU LEU ARG GLN PHE PHE GLU GLN VAL GLU ALA SEQRES 21 A 439 TYR GLY TYR GLY ASP TRP VAL LEU PHE ASP ALA SER VAL SEQRES 22 A 439 VAL ARG GLY LEU ALA TYR TYR THR GLY ILE VAL PHE GLU SEQRES 23 A 439 GLY PHE ASP ARG GLU GLY LYS PHE ARG ALA LEU CYS GLY SEQRES 24 A 439 GLY GLY ARG TYR ASP ASN LEU LEU THR THR TYR GLY SER SEQRES 25 A 439 PRO THR PRO ILE PRO CYS ALA GLY PHE GLY PHE GLY ASP SEQRES 26 A 439 CYS VAL ILE VAL GLU LEU LEU GLN GLU LYS ARG LEU LEU SEQRES 27 A 439 PRO ASP ILE PRO HIS VAL VAL ASP ASP VAL VAL ILE PRO SEQRES 28 A 439 PHE ASP GLU SER MET ARG PRO HIS ALA LEU ALA VAL LEU SEQRES 29 A 439 ARG ARG LEU ARG ASP ALA GLY ARG SER ALA ASP ILE ILE SEQRES 30 A 439 LEU ASP LYS LYS LYS VAL VAL GLN ALA PHE ASN TYR ALA SEQRES 31 A 439 ASP ARG VAL GLY ALA VAL ARG ALA VAL LEU VAL ALA PRO SEQRES 32 A 439 GLU GLU TRP GLU ARG GLY GLU VAL GLN VAL LYS MET LEU SEQRES 33 A 439 ARG GLU GLY THR GLY LYS GLU GLU GLY GLY ALA GLU ARG SEQRES 34 A 439 GLY PHE ALA VAL PRO LEU ASP ARG LEU VAL HET HIS A 501 11 HETNAM HIS HISTIDINE FORMUL 2 HIS C6 H10 N3 O2 1+ FORMUL 3 HOH *119(H2 O) HELIX 1 1 PRO A 61 PHE A 82 1 22 HELIX 2 2 GLU A 96 ILE A 99 5 4 HELIX 3 3 GLU A 104 GLN A 109 1 6 HELIX 4 4 MET A 127 LYS A 138 1 12 HELIX 5 5 VAL A 181 LEU A 198 1 18 HELIX 6 6 ARG A 212 GLN A 221 1 10 HELIX 7 7 THR A 225 ASP A 227 5 3 HELIX 8 8 LYS A 228 ASP A 237 1 10 HELIX 9 9 LYS A 238 GLU A 240 5 3 HELIX 10 10 PRO A 243 GLY A 255 1 13 HELIX 11 11 GLU A 257 SER A 269 1 13 HELIX 12 12 SER A 272 GLY A 281 1 10 HELIX 13 13 HIS A 284 GLY A 301 1 18 HELIX 14 14 TYR A 302 ASP A 304 5 3 HELIX 15 15 ASN A 344 TYR A 349 1 6 HELIX 16 16 ASP A 364 LYS A 374 1 11 HELIX 17 17 ASP A 392 SER A 394 5 3 HELIX 18 18 MET A 395 ALA A 409 1 15 HELIX 19 19 LYS A 421 GLY A 433 1 13 HELIX 20 20 ALA A 441 ARG A 447 1 7 HELIX 21 21 ASP A 475 VAL A 478 5 4 SHEET 1 A 4 GLU A 85 GLU A 86 0 SHEET 2 A 4 ALA A 146 SER A 150 1 O LYS A 147 N GLU A 85 SHEET 3 A 4 GLU A 167 VAL A 176 -1 O ASN A 172 N SER A 150 SHEET 4 A 4 GLN A 153 TRP A 155 -1 N CYS A 154 O HIS A 168 SHEET 1 B 8 GLU A 85 GLU A 86 0 SHEET 2 B 8 ALA A 146 SER A 150 1 O LYS A 147 N GLU A 85 SHEET 3 B 8 GLU A 167 VAL A 176 -1 O ASN A 172 N SER A 150 SHEET 4 B 8 CYS A 357 GLY A 363 -1 O ALA A 358 N ILE A 175 SHEET 5 B 8 CYS A 337 ARG A 341 -1 N GLY A 338 O GLY A 361 SHEET 6 B 8 ILE A 322 ASP A 328 -1 N PHE A 324 O GLY A 339 SHEET 7 B 8 VAL A 205 SER A 211 -1 N LYS A 208 O GLU A 325 SHEET 8 B 8 VAL A 306 PHE A 308 1 O LEU A 307 N VAL A 209 SHEET 1 C 3 LEU A 92 SER A 94 0 SHEET 2 C 3 VAL A 121 LEU A 123 -1 O ALA A 122 N GLU A 93 SHEET 3 C 3 PHE A 111 PHE A 113 -1 N PHE A 113 O VAL A 121 SHEET 1 D 5 ALA A 413 ILE A 415 0 SHEET 2 D 5 VAL A 384 PRO A 390 1 N VAL A 388 O ASP A 414 SHEET 3 D 5 ALA A 434 VAL A 440 1 O VAL A 438 N VAL A 387 SHEET 4 D 5 GLU A 449 MET A 454 -1 O GLN A 451 N LEU A 439 SHEET 5 D 5 PHE A 470 PRO A 473 -1 O PHE A 470 N VAL A 452 CISPEP 1 LEU A 144 PRO A 145 0 -1.64 CISPEP 2 GLY A 223 VAL A 224 0 8.04 CISPEP 3 VAL A 224 THR A 225 0 -13.21 SITE 1 AC1 15 GLU A 126 THR A 128 GLN A 170 ASN A 172 SITE 2 AC1 15 ASP A 174 LEU A 316 TYR A 318 TYR A 319 SITE 3 AC1 15 TYR A 342 GLY A 359 PHE A 360 GLY A 361 SITE 4 AC1 15 HOH A 506 HOH A 523 HOH A 620 CRYST1 90.240 119.478 66.239 90.00 132.94 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011082 0.000000 0.010312 0.00000 SCALE2 0.000000 0.008370 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020622 0.00000