data_3HRL # _entry.id 3HRL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3HRL RCSB RCSB053497 WWPDB D_1000053497 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id apc63439.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3HRL _pdbx_database_status.recvd_initial_deposition_date 2009-06-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippova, E.V.' 1 'Minasov, G.' 2 'Shuvalova, L.' 3 'Kiryukhina, O.' 4 'Cobb, G.' 5 'Joachimiak, A.' 6 'Anderson, W.F.' 7 'Midwest Center for Structural Genomics (MCSG)' 8 # _citation.id primary _citation.title 'Crystal Structure of a Putative Endonuclease-Like Protein (Ngo0050) from Neisseria Gonorrhoeae' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Filippova, E.V.' 1 primary 'Minasov, G.' 2 primary 'Shuvalova, L.' 3 primary 'Kiryukhina, O.' 4 primary 'Cobb, G.' 5 primary 'Joachimiak, A.' 6 primary 'Anderson, W.F.' 7 # _cell.entry_id 3HRL _cell.length_a 52.922 _cell.length_b 52.922 _cell.length_c 102.295 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HRL _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Endonuclease-Like Protein' 12215.399 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 105 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)SEAEAKLWQHLRAGRLNGYKFRRQQP(MSE)GNYIVDF(MSE)CVTPKLIVEADGGQHAEQAVYDHARTVYL NSLGFTVLRFWNHEILQQTNDVLAEILRVLQELEKQ ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMSEAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHAEQAVYDHARTVYLNSLGFTVLRFWN HEILQQTNDVLAEILRVLQELEKQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier apc63439.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 SER n 1 6 GLU n 1 7 ALA n 1 8 GLU n 1 9 ALA n 1 10 LYS n 1 11 LEU n 1 12 TRP n 1 13 GLN n 1 14 HIS n 1 15 LEU n 1 16 ARG n 1 17 ALA n 1 18 GLY n 1 19 ARG n 1 20 LEU n 1 21 ASN n 1 22 GLY n 1 23 TYR n 1 24 LYS n 1 25 PHE n 1 26 ARG n 1 27 ARG n 1 28 GLN n 1 29 GLN n 1 30 PRO n 1 31 MSE n 1 32 GLY n 1 33 ASN n 1 34 TYR n 1 35 ILE n 1 36 VAL n 1 37 ASP n 1 38 PHE n 1 39 MSE n 1 40 CYS n 1 41 VAL n 1 42 THR n 1 43 PRO n 1 44 LYS n 1 45 LEU n 1 46 ILE n 1 47 VAL n 1 48 GLU n 1 49 ALA n 1 50 ASP n 1 51 GLY n 1 52 GLY n 1 53 GLN n 1 54 HIS n 1 55 ALA n 1 56 GLU n 1 57 GLN n 1 58 ALA n 1 59 VAL n 1 60 TYR n 1 61 ASP n 1 62 HIS n 1 63 ALA n 1 64 ARG n 1 65 THR n 1 66 VAL n 1 67 TYR n 1 68 LEU n 1 69 ASN n 1 70 SER n 1 71 LEU n 1 72 GLY n 1 73 PHE n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 ARG n 1 78 PHE n 1 79 TRP n 1 80 ASN n 1 81 HIS n 1 82 GLU n 1 83 ILE n 1 84 LEU n 1 85 GLN n 1 86 GLN n 1 87 THR n 1 88 ASN n 1 89 ASP n 1 90 VAL n 1 91 LEU n 1 92 ALA n 1 93 GLU n 1 94 ILE n 1 95 LEU n 1 96 ARG n 1 97 VAL n 1 98 LEU n 1 99 GLN n 1 100 GLU n 1 101 LEU n 1 102 GLU n 1 103 LYS n 1 104 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NGO0050 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Neisseria gonorrhoeae FA 1090' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 242231 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21magic _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5FAH0_NEIG1 _struct_ref.pdbx_db_accession Q5FAH0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SEAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHAEQAVYDHARTVYLNSLGFTVLRFWNHEIL QQTNDVLAEILRVLQELEKQ ; _struct_ref.pdbx_align_begin 27 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HRL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 104 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5FAH0 _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 126 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 27 _struct_ref_seq.pdbx_auth_seq_align_end 126 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3HRL SER A 1 ? UNP Q5FAH0 ? ? 'expression tag' -2 1 1 3HRL ASN A 2 ? UNP Q5FAH0 ? ? 'expression tag' -1 2 1 3HRL ALA A 3 ? UNP Q5FAH0 ? ? 'expression tag' 0 3 1 3HRL MSE A 4 ? UNP Q5FAH0 ? ? 'expression tag' 26 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3HRL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.39 _exptl_crystal.density_percent_sol 63.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '3M NaCl, 0.1M HEPES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 294K' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2009-05-29 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI-111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength 0.97872 _diffrn_source.pdbx_wavelength_list 0.97872 # _reflns.entry_id 3HRL _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 22.330 _reflns.d_resolution_high 1.950 _reflns.number_obs 23330 _reflns.number_all 23330 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.07000 _reflns.pdbx_Rsym_value 0.07000 _reflns.pdbx_netI_over_sigmaI 21.7120 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.800 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 1.98 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs 0.35300 _reflns_shell.pdbx_Rsym_value 0.35300 _reflns_shell.meanI_over_sigI_obs 5.200 _reflns_shell.pdbx_redundancy 5.80 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3HRL _refine.ls_number_reflns_obs 11984 _refine.ls_number_reflns_all 12588 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.33 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 99.83 _refine.ls_R_factor_obs 0.18521 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18316 _refine.ls_R_factor_R_free 0.22600 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 604 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 19.925 _refine.aniso_B[1][1] 1.65 _refine.aniso_B[2][2] 1.65 _refine.aniso_B[3][3] -2.47 _refine.aniso_B[1][2] 0.82 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.117 _refine.pdbx_overall_ESU_R_Free 0.122 _refine.overall_SU_ML 0.077 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.694 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 775 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 105 _refine_hist.number_atoms_total 881 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 22.33 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.022 ? 790 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 539 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.615 1.941 ? 1066 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.901 3.000 ? 1301 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.733 5.000 ? 92 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 28.800 23.571 ? 42 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.223 15.000 ? 141 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.846 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.098 0.200 ? 117 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 867 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 170 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.087 1.500 ? 465 'X-RAY DIFFRACTION' ? r_mcbond_other 0.314 1.500 ? 190 'X-RAY DIFFRACTION' ? r_mcangle_it 1.997 2.000 ? 746 'X-RAY DIFFRACTION' ? r_scbond_it 3.529 3.000 ? 325 'X-RAY DIFFRACTION' ? r_scangle_it 5.930 4.500 ? 320 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.950 _refine_ls_shell.d_res_low 2.001 _refine_ls_shell.number_reflns_R_work 839 _refine_ls_shell.R_factor_R_work 0.190 _refine_ls_shell.percent_reflns_obs 98.65 _refine_ls_shell.R_factor_R_free 0.265 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3HRL _struct.title 'Crystal structure of a putative endonuclease-like protein (ngo0050) from neisseria gonorrhoeae' _struct.pdbx_descriptor 'Endonuclease-Like Protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HRL _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.text ;STRUCTURAL GENOMICS; ENDONUCLEASE; NEISSERIA GONORRHOEAE, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, structural genomics, unknown function ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 5 ? ARG A 16 ? SER A 27 ARG A 38 1 ? 12 HELX_P HELX_P2 2 ALA A 17 ? ARG A 19 ? ALA A 39 ARG A 41 5 ? 3 HELX_P HELX_P3 3 ASP A 61 ? LEU A 71 ? ASP A 83 LEU A 93 1 ? 11 HELX_P HELX_P4 4 ASN A 80 ? GLN A 86 ? ASN A 102 GLN A 108 1 ? 7 HELX_P HELX_P5 5 GLN A 86 ? LYS A 103 ? GLN A 108 LYS A 125 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 26 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A SER 5 N ? ? A MSE 26 A SER 27 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? A PRO 30 C ? ? ? 1_555 A MSE 31 N ? ? A PRO 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.325 ? covale4 covale ? ? A MSE 31 C ? ? ? 1_555 A GLY 32 N ? ? A MSE 53 A GLY 54 1_555 ? ? ? ? ? ? ? 1.322 ? covale5 covale ? ? A PHE 38 C ? ? ? 1_555 A MSE 39 N ? ? A PHE 60 A MSE 61 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 39 C ? ? ? 1_555 A CYS 40 N ? ? A MSE 61 A CYS 62 1_555 ? ? ? ? ? ? ? 1.323 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 42 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 64 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 43 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 65 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.69 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 25 ? MSE A 31 ? PHE A 47 MSE A 53 A 2 TYR A 34 ? CYS A 40 ? TYR A 56 CYS A 62 A 3 LEU A 45 ? ASP A 50 ? LEU A 67 ASP A 72 A 4 THR A 74 ? TRP A 79 ? THR A 96 TRP A 101 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N MSE A 31 ? N MSE A 53 O TYR A 34 ? O TYR A 56 A 2 3 N CYS A 40 ? N CYS A 62 O LEU A 45 ? O LEU A 67 A 3 4 N ASP A 50 ? N ASP A 72 O PHE A 78 ? O PHE A 100 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE CL A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 TYR A 34 ? TYR A 56 . ? 1_555 ? 2 AC1 4 ILE A 35 ? ILE A 57 . ? 1_555 ? 3 AC1 4 ARG A 64 ? ARG A 86 . ? 1_555 ? 4 AC1 4 HOH C . ? HOH A 146 . ? 1_555 ? # _database_PDB_matrix.entry_id 3HRL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3HRL _atom_sites.fract_transf_matrix[1][1] 0.018896 _atom_sites.fract_transf_matrix[1][2] 0.010909 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021819 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009776 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 26 26 MSE MSE A . n A 1 5 SER 5 27 27 SER SER A . n A 1 6 GLU 6 28 28 GLU GLU A . n A 1 7 ALA 7 29 29 ALA ALA A . n A 1 8 GLU 8 30 30 GLU GLU A . n A 1 9 ALA 9 31 31 ALA ALA A . n A 1 10 LYS 10 32 32 LYS LYS A . n A 1 11 LEU 11 33 33 LEU LEU A . n A 1 12 TRP 12 34 34 TRP TRP A . n A 1 13 GLN 13 35 35 GLN GLN A . n A 1 14 HIS 14 36 36 HIS HIS A . n A 1 15 LEU 15 37 37 LEU LEU A . n A 1 16 ARG 16 38 38 ARG ARG A . n A 1 17 ALA 17 39 39 ALA ALA A . n A 1 18 GLY 18 40 40 GLY GLY A . n A 1 19 ARG 19 41 41 ARG ARG A . n A 1 20 LEU 20 42 42 LEU LEU A . n A 1 21 ASN 21 43 43 ASN ASN A . n A 1 22 GLY 22 44 44 GLY GLY A . n A 1 23 TYR 23 45 45 TYR TYR A . n A 1 24 LYS 24 46 46 LYS LYS A . n A 1 25 PHE 25 47 47 PHE PHE A . n A 1 26 ARG 26 48 48 ARG ARG A . n A 1 27 ARG 27 49 49 ARG ARG A . n A 1 28 GLN 28 50 50 GLN GLN A . n A 1 29 GLN 29 51 51 GLN GLN A . n A 1 30 PRO 30 52 52 PRO PRO A . n A 1 31 MSE 31 53 53 MSE MSE A . n A 1 32 GLY 32 54 54 GLY GLY A . n A 1 33 ASN 33 55 55 ASN ASN A . n A 1 34 TYR 34 56 56 TYR TYR A . n A 1 35 ILE 35 57 57 ILE ILE A . n A 1 36 VAL 36 58 58 VAL VAL A . n A 1 37 ASP 37 59 59 ASP ASP A . n A 1 38 PHE 38 60 60 PHE PHE A . n A 1 39 MSE 39 61 61 MSE MSE A . n A 1 40 CYS 40 62 62 CYS CYS A . n A 1 41 VAL 41 63 63 VAL VAL A . n A 1 42 THR 42 64 64 THR THR A . n A 1 43 PRO 43 65 65 PRO PRO A . n A 1 44 LYS 44 66 66 LYS LYS A . n A 1 45 LEU 45 67 67 LEU LEU A . n A 1 46 ILE 46 68 68 ILE ILE A . n A 1 47 VAL 47 69 69 VAL VAL A . n A 1 48 GLU 48 70 70 GLU GLU A . n A 1 49 ALA 49 71 71 ALA ALA A . n A 1 50 ASP 50 72 72 ASP ASP A . n A 1 51 GLY 51 73 73 GLY GLY A . n A 1 52 GLY 52 74 ? ? ? A . n A 1 53 GLN 53 75 ? ? ? A . n A 1 54 HIS 54 76 ? ? ? A . n A 1 55 ALA 55 77 ? ? ? A . n A 1 56 GLU 56 78 ? ? ? A . n A 1 57 GLN 57 79 ? ? ? A . n A 1 58 ALA 58 80 ? ? ? A . n A 1 59 VAL 59 81 81 VAL VAL A . n A 1 60 TYR 60 82 82 TYR TYR A . n A 1 61 ASP 61 83 83 ASP ASP A . n A 1 62 HIS 62 84 84 HIS HIS A . n A 1 63 ALA 63 85 85 ALA ALA A . n A 1 64 ARG 64 86 86 ARG ARG A . n A 1 65 THR 65 87 87 THR THR A . n A 1 66 VAL 66 88 88 VAL VAL A . n A 1 67 TYR 67 89 89 TYR TYR A . n A 1 68 LEU 68 90 90 LEU LEU A . n A 1 69 ASN 69 91 91 ASN ASN A . n A 1 70 SER 70 92 92 SER SER A . n A 1 71 LEU 71 93 93 LEU LEU A . n A 1 72 GLY 72 94 94 GLY GLY A . n A 1 73 PHE 73 95 95 PHE PHE A . n A 1 74 THR 74 96 96 THR THR A . n A 1 75 VAL 75 97 97 VAL VAL A . n A 1 76 LEU 76 98 98 LEU LEU A . n A 1 77 ARG 77 99 99 ARG ARG A . n A 1 78 PHE 78 100 100 PHE PHE A . n A 1 79 TRP 79 101 101 TRP TRP A . n A 1 80 ASN 80 102 102 ASN ASN A . n A 1 81 HIS 81 103 103 HIS HIS A . n A 1 82 GLU 82 104 104 GLU GLU A . n A 1 83 ILE 83 105 105 ILE ILE A . n A 1 84 LEU 84 106 106 LEU LEU A . n A 1 85 GLN 85 107 107 GLN GLN A . n A 1 86 GLN 86 108 108 GLN GLN A . n A 1 87 THR 87 109 109 THR THR A . n A 1 88 ASN 88 110 110 ASN ASN A . n A 1 89 ASP 89 111 111 ASP ASP A . n A 1 90 VAL 90 112 112 VAL VAL A . n A 1 91 LEU 91 113 113 LEU LEU A . n A 1 92 ALA 92 114 114 ALA ALA A . n A 1 93 GLU 93 115 115 GLU GLU A . n A 1 94 ILE 94 116 116 ILE ILE A . n A 1 95 LEU 95 117 117 LEU LEU A . n A 1 96 ARG 96 118 118 ARG ARG A . n A 1 97 VAL 97 119 119 VAL VAL A . n A 1 98 LEU 98 120 120 LEU LEU A . n A 1 99 GLN 99 121 121 GLN GLN A . n A 1 100 GLU 100 122 122 GLU GLU A . n A 1 101 LEU 101 123 123 LEU LEU A . n A 1 102 GLU 102 124 124 GLU GLU A . n A 1 103 LYS 103 125 125 LYS LYS A . n A 1 104 GLN 104 126 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 1 1 CL CL A . C 3 HOH 1 2 2 HOH HOH A . C 3 HOH 2 3 3 HOH HOH A . C 3 HOH 3 4 4 HOH HOH A . C 3 HOH 4 5 5 HOH HOH A . C 3 HOH 5 6 6 HOH HOH A . C 3 HOH 6 7 7 HOH HOH A . C 3 HOH 7 8 8 HOH HOH A . C 3 HOH 8 9 9 HOH HOH A . C 3 HOH 9 10 10 HOH HOH A . C 3 HOH 10 11 11 HOH HOH A . C 3 HOH 11 12 12 HOH HOH A . C 3 HOH 12 13 13 HOH HOH A . C 3 HOH 13 14 14 HOH HOH A . C 3 HOH 14 15 15 HOH HOH A . C 3 HOH 15 16 16 HOH HOH A . C 3 HOH 16 17 17 HOH HOH A . C 3 HOH 17 18 18 HOH HOH A . C 3 HOH 18 19 19 HOH HOH A . C 3 HOH 19 20 20 HOH HOH A . C 3 HOH 20 21 21 HOH HOH A . C 3 HOH 21 22 22 HOH HOH A . C 3 HOH 22 23 23 HOH HOH A . C 3 HOH 23 24 24 HOH HOH A . C 3 HOH 24 25 25 HOH HOH A . C 3 HOH 25 127 26 HOH HOH A . C 3 HOH 26 128 27 HOH HOH A . C 3 HOH 27 129 28 HOH HOH A . C 3 HOH 28 130 29 HOH HOH A . C 3 HOH 29 131 30 HOH HOH A . C 3 HOH 30 132 31 HOH HOH A . C 3 HOH 31 133 32 HOH HOH A . C 3 HOH 32 134 33 HOH HOH A . C 3 HOH 33 135 34 HOH HOH A . C 3 HOH 34 136 35 HOH HOH A . C 3 HOH 35 137 36 HOH HOH A . C 3 HOH 36 138 37 HOH HOH A . C 3 HOH 37 139 38 HOH HOH A . C 3 HOH 38 140 39 HOH HOH A . C 3 HOH 39 141 40 HOH HOH A . C 3 HOH 40 142 41 HOH HOH A . C 3 HOH 41 143 42 HOH HOH A . C 3 HOH 42 144 43 HOH HOH A . C 3 HOH 43 145 44 HOH HOH A . C 3 HOH 44 146 45 HOH HOH A . C 3 HOH 45 147 46 HOH HOH A . C 3 HOH 46 148 47 HOH HOH A . C 3 HOH 47 149 48 HOH HOH A . C 3 HOH 48 150 49 HOH HOH A . C 3 HOH 49 151 50 HOH HOH A . C 3 HOH 50 152 51 HOH HOH A . C 3 HOH 51 153 52 HOH HOH A . C 3 HOH 52 154 53 HOH HOH A . C 3 HOH 53 155 54 HOH HOH A . C 3 HOH 54 156 55 HOH HOH A . C 3 HOH 55 157 56 HOH HOH A . C 3 HOH 56 158 57 HOH HOH A . C 3 HOH 57 159 58 HOH HOH A . C 3 HOH 58 160 59 HOH HOH A . C 3 HOH 59 161 60 HOH HOH A . C 3 HOH 60 162 61 HOH HOH A . C 3 HOH 61 163 62 HOH HOH A . C 3 HOH 62 164 63 HOH HOH A . C 3 HOH 63 165 64 HOH HOH A . C 3 HOH 64 166 65 HOH HOH A . C 3 HOH 65 167 66 HOH HOH A . C 3 HOH 66 168 67 HOH HOH A . C 3 HOH 67 169 68 HOH HOH A . C 3 HOH 68 170 69 HOH HOH A . C 3 HOH 69 171 70 HOH HOH A . C 3 HOH 70 172 71 HOH HOH A . C 3 HOH 71 173 72 HOH HOH A . C 3 HOH 72 174 73 HOH HOH A . C 3 HOH 73 175 74 HOH HOH A . C 3 HOH 74 176 75 HOH HOH A . C 3 HOH 75 177 76 HOH HOH A . C 3 HOH 76 178 77 HOH HOH A . C 3 HOH 77 179 78 HOH HOH A . C 3 HOH 78 180 79 HOH HOH A . C 3 HOH 79 181 80 HOH HOH A . C 3 HOH 80 182 81 HOH HOH A . C 3 HOH 81 183 82 HOH HOH A . C 3 HOH 82 184 83 HOH HOH A . C 3 HOH 83 185 84 HOH HOH A . C 3 HOH 84 186 85 HOH HOH A . C 3 HOH 85 187 86 HOH HOH A . C 3 HOH 86 188 87 HOH HOH A . C 3 HOH 87 189 88 HOH HOH A . C 3 HOH 88 190 89 HOH HOH A . C 3 HOH 89 191 90 HOH HOH A . C 3 HOH 90 192 91 HOH HOH A . C 3 HOH 91 193 92 HOH HOH A . C 3 HOH 92 194 93 HOH HOH A . C 3 HOH 93 195 94 HOH HOH A . C 3 HOH 94 196 95 HOH HOH A . C 3 HOH 95 197 96 HOH HOH A . C 3 HOH 96 198 97 HOH HOH A . C 3 HOH 97 199 98 HOH HOH A . C 3 HOH 98 200 99 HOH HOH A . C 3 HOH 99 201 100 HOH HOH A . C 3 HOH 100 202 101 HOH HOH A . C 3 HOH 101 203 102 HOH HOH A . C 3 HOH 102 204 103 HOH HOH A . C 3 HOH 103 205 104 HOH HOH A . C 3 HOH 104 206 105 HOH HOH A . C 3 HOH 105 207 106 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 26 ? MET SELENOMETHIONINE 2 A MSE 31 A MSE 53 ? MET SELENOMETHIONINE 3 A MSE 39 A MSE 61 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 34.4501 _pdbx_refine_tls.origin_y 22.4862 _pdbx_refine_tls.origin_z 20.4432 _pdbx_refine_tls.T[1][1] 0.0517 _pdbx_refine_tls.T[2][2] 0.0852 _pdbx_refine_tls.T[3][3] 0.0103 _pdbx_refine_tls.T[1][2] 0.0085 _pdbx_refine_tls.T[1][3] 0.0086 _pdbx_refine_tls.T[2][3] 0.0165 _pdbx_refine_tls.L[1][1] 2.8971 _pdbx_refine_tls.L[2][2] 0.9887 _pdbx_refine_tls.L[3][3] 1.4877 _pdbx_refine_tls.L[1][2] 0.5420 _pdbx_refine_tls.L[1][3] 0.9626 _pdbx_refine_tls.L[2][3] 0.4558 _pdbx_refine_tls.S[1][1] -0.0131 _pdbx_refine_tls.S[1][2] 0.1571 _pdbx_refine_tls.S[1][3] -0.0196 _pdbx_refine_tls.S[2][1] -0.0458 _pdbx_refine_tls.S[2][2] 0.0904 _pdbx_refine_tls.S[2][3] 0.0156 _pdbx_refine_tls.S[3][1] -0.0181 _pdbx_refine_tls.S[3][2] 0.0068 _pdbx_refine_tls.S[3][3] -0.0773 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 26 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 125 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' Max ? 1 HKL-3000 phasing . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 SHELXD phasing . ? 5 ARP/wARP 'model building' . ? 6 Coot 'model building' . ? 7 REFMAC refinement 5.5.0051 ? 8 HKL-2000 'data reduction' . ? 9 HKL-2000 'data scaling' . ? 10 DM phasing . ? 11 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A GLY 74 ? A GLY 52 4 1 Y 1 A GLN 75 ? A GLN 53 5 1 Y 1 A HIS 76 ? A HIS 54 6 1 Y 1 A ALA 77 ? A ALA 55 7 1 Y 1 A GLU 78 ? A GLU 56 8 1 Y 1 A GLN 79 ? A GLN 57 9 1 Y 1 A ALA 80 ? A ALA 58 10 1 Y 1 A GLN 126 ? A GLN 104 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH #