HEADER ANTITOXIN 10-JUN-09 3HRY TITLE CRYSTAL STRUCTURE OF PHD IN A TRIGONAL SPACE GROUP AND PARTIALLY TITLE 2 DISORDERED COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREVENT HOST DEATH PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PHD PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PHD, PHD, IPF_68; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS PHD, PREVENT HOST DEATH, INTRINSIC DISORDER, DOC, ANTITOXIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GARCIA-PINO,R.LORIS REVDAT 3 06-SEP-23 3HRY 1 REMARK REVDAT 2 21-JUL-10 3HRY 1 JRNL REVDAT 1 23-JUN-10 3HRY 0 JRNL AUTH A.GARCIA-PINO,S.BALASUBRAMANIAN,L.WYNS,E.GAZIT,H.DE GREVE, JRNL AUTH 2 R.D.MAGNUSON,D.CHARLIER,N.A.VAN NULAND,R.LORIS JRNL TITL ALLOSTERY AND INTRINSIC DISORDER MEDIATE TRANSCRIPTION JRNL TITL 2 REGULATION BY CONDITIONAL COOPERATIVITY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 142 101 2010 JRNL REFN ISSN 0092-8674 JRNL PMID 20603017 JRNL DOI 10.1016/J.CELL.2010.05.039 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 11.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 9720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 11.8100 - 3.8128 0.98 1952 94 0.1321 0.2162 REMARK 3 2 3.8128 - 3.0434 0.98 1907 88 0.2023 0.2696 REMARK 3 3 3.0434 - 2.6637 0.98 1878 80 0.2722 0.2519 REMARK 3 4 2.6637 - 2.4225 0.98 1837 102 0.2999 0.3579 REMARK 3 5 2.4225 - 2.2500 0.98 1685 97 0.3033 0.3497 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 91.35 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4440 REMARK 3 OPERATOR: -K,H+K,L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0723 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9720 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 11.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.24800 REMARK 200 R SYM FOR SHELL (I) : 0.24800 REMARK 200 FOR SHELL : 6.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3DD7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 8% ETHYLENE GLYCOL, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.66900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.33800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.33800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.66900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 22.66900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 68 REMARK 465 GLU A 69 REMARK 465 LEU A 70 REMARK 465 VAL A 71 REMARK 465 ASN A 72 REMARK 465 ARG A 73 REMARK 465 PHE B 56 REMARK 465 ALA B 57 REMARK 465 SER B 58 REMARK 465 LEU B 59 REMARK 465 PHE B 60 REMARK 465 ASP B 61 REMARK 465 THR B 62 REMARK 465 LEU B 63 REMARK 465 ASP B 64 REMARK 465 SER B 65 REMARK 465 THR B 66 REMARK 465 ASN B 67 REMARK 465 LYS B 68 REMARK 465 GLU B 69 REMARK 465 LEU B 70 REMARK 465 VAL B 71 REMARK 465 ASN B 72 REMARK 465 ARG B 73 REMARK 465 MET C 1 REMARK 465 ALA C 9 REMARK 465 ARG C 10 REMARK 465 GLY C 11 REMARK 465 ASN C 12 REMARK 465 LEU C 13 REMARK 465 ALA C 50 REMARK 465 ALA C 51 REMARK 465 LEU C 52 REMARK 465 ASP C 53 REMARK 465 ALA C 54 REMARK 465 GLU C 55 REMARK 465 PHE C 56 REMARK 465 ALA C 57 REMARK 465 SER C 58 REMARK 465 LEU C 59 REMARK 465 PHE C 60 REMARK 465 ASP C 61 REMARK 465 THR C 62 REMARK 465 LEU C 63 REMARK 465 ASP C 64 REMARK 465 SER C 65 REMARK 465 THR C 66 REMARK 465 ASN C 67 REMARK 465 LYS C 68 REMARK 465 GLU C 69 REMARK 465 LEU C 70 REMARK 465 VAL C 71 REMARK 465 ASN C 72 REMARK 465 ARG C 73 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 ASN A 18 CG OD1 ND2 REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 ARG A 31 CB CG CD NE CZ NH1 NH2 REMARK 470 THR A 43 OG1 CG2 REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 ALA A 46 CB REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 ALA A 51 CB REMARK 470 ALA A 54 CB REMARK 470 GLU A 55 CB CG CD OE1 OE2 REMARK 470 PHE A 56 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 59 CG CD1 CD2 REMARK 470 PHE A 60 CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 LEU A 63 CG CD1 CD2 REMARK 470 SER A 65 OG REMARK 470 THR A 66 CB OG1 CG2 REMARK 470 ILE B 4 CD1 REMARK 470 PHE B 6 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR B 8 OG1 CG2 REMARK 470 ARG B 10 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 12 CB CG OD1 ND2 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 ALA B 50 CB REMARK 470 LEU B 52 CG CD1 CD2 REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 470 ILE C 4 CG1 CG2 CD1 REMARK 470 ASN C 5 CB CG OD1 ND2 REMARK 470 ARG C 7 CG CD NE CZ NH1 NH2 REMARK 470 THR C 8 OG1 CG2 REMARK 470 GLU C 15 CG CD OE1 OE2 REMARK 470 ASN C 18 CG OD1 ND2 REMARK 470 ASN C 19 CB CG OD1 ND2 REMARK 470 GLU C 21 CG CD OE1 OE2 REMARK 470 ALA C 22 CB REMARK 470 GLU C 24 CG CD OE1 OE2 REMARK 470 GLU C 27 CG CD OE1 OE2 REMARK 470 ARG C 31 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG C 33 CB CG CD NE CZ NH1 NH2 REMARK 470 ALA C 42 CB REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 LYS C 49 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ASN A 18 O HOH A 90 1.90 REMARK 500 O SER C 3 O HOH C 76 2.07 REMARK 500 O MET A 1 O HOH A 80 2.15 REMARK 500 O ASN C 5 N ARG C 7 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 56 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP B 53 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 56 -29.69 -151.18 REMARK 500 ALA A 57 -127.25 68.81 REMARK 500 ALA A 57 -124.54 68.81 REMARK 500 SER A 58 -144.59 40.18 REMARK 500 SER A 58 -108.57 -172.05 REMARK 500 ASP A 61 50.65 -92.13 REMARK 500 THR A 62 43.74 151.11 REMARK 500 ASP A 64 -118.57 139.25 REMARK 500 SER A 65 -115.68 -142.98 REMARK 500 THR A 66 69.54 171.89 REMARK 500 ASN B 12 27.70 -149.29 REMARK 500 ARG B 31 91.96 -68.61 REMARK 500 LEU B 52 -147.78 -120.71 REMARK 500 PHE C 6 80.31 -64.75 REMARK 500 GLU C 25 -160.28 -127.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HS2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PHD FROM BACTERIOPHAGE P1 TRUNCATED TO SER58 REMARK 900 RELATED ID: 3DD7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF PHD DBREF 3HRY A 1 73 UNP Q79A04 Q79A04_ECOLX 1 73 DBREF 3HRY B 1 73 UNP Q79A04 Q79A04_ECOLX 1 73 DBREF 3HRY C 1 73 UNP Q79A04 Q79A04_ECOLX 1 73 SEQRES 1 A 73 MET GLN SER ILE ASN PHE ARG THR ALA ARG GLY ASN LEU SEQRES 2 A 73 SER GLU VAL LEU ASN ASN VAL GLU ALA GLY GLU GLU VAL SEQRES 3 A 73 GLU ILE THR ARG ARG GLY ARG GLU PRO ALA VAL ILE VAL SEQRES 4 A 73 SER LYS ALA THR PHE GLU ALA TYR LYS LYS ALA ALA LEU SEQRES 5 A 73 ASP ALA GLU PHE ALA SER LEU PHE ASP THR LEU ASP SER SEQRES 6 A 73 THR ASN LYS GLU LEU VAL ASN ARG SEQRES 1 B 73 MET GLN SER ILE ASN PHE ARG THR ALA ARG GLY ASN LEU SEQRES 2 B 73 SER GLU VAL LEU ASN ASN VAL GLU ALA GLY GLU GLU VAL SEQRES 3 B 73 GLU ILE THR ARG ARG GLY ARG GLU PRO ALA VAL ILE VAL SEQRES 4 B 73 SER LYS ALA THR PHE GLU ALA TYR LYS LYS ALA ALA LEU SEQRES 5 B 73 ASP ALA GLU PHE ALA SER LEU PHE ASP THR LEU ASP SER SEQRES 6 B 73 THR ASN LYS GLU LEU VAL ASN ARG SEQRES 1 C 73 MET GLN SER ILE ASN PHE ARG THR ALA ARG GLY ASN LEU SEQRES 2 C 73 SER GLU VAL LEU ASN ASN VAL GLU ALA GLY GLU GLU VAL SEQRES 3 C 73 GLU ILE THR ARG ARG GLY ARG GLU PRO ALA VAL ILE VAL SEQRES 4 C 73 SER LYS ALA THR PHE GLU ALA TYR LYS LYS ALA ALA LEU SEQRES 5 C 73 ASP ALA GLU PHE ALA SER LEU PHE ASP THR LEU ASP SER SEQRES 6 C 73 THR ASN LYS GLU LEU VAL ASN ARG FORMUL 4 HOH *42(H2 O) HELIX 1 1 PHE A 6 GLU A 21 1 16 HELIX 2 2 LYS A 41 ALA A 50 1 10 HELIX 3 3 ALA A 57 ASP A 61 5 5 HELIX 4 4 PHE B 6 GLY B 11 1 6 HELIX 5 5 ASN B 12 GLU B 21 1 10 HELIX 6 6 LYS B 41 ALA B 50 1 10 SHEET 1 A 4 SER A 3 ASN A 5 0 SHEET 2 A 4 VAL A 26 THR A 29 1 O THR A 29 N ILE A 4 SHEET 3 A 4 ALA A 36 SER A 40 -1 O ALA A 36 N ILE A 28 SHEET 4 A 4 ALA B 36 SER B 40 -1 O VAL B 39 N VAL A 37 SHEET 1 B 2 SER B 3 ASN B 5 0 SHEET 2 B 2 GLU B 27 THR B 29 1 O GLU B 27 N ILE B 4 SHEET 1 C 2 SER C 3 ILE C 4 0 SHEET 2 C 2 GLU C 27 ILE C 28 1 O GLU C 27 N ILE C 4 CISPEP 1 ALA A 54 GLU A 55 0 2.55 CISPEP 2 THR A 62 LEU A 63 0 0.93 CISPEP 3 SER A 65 THR A 66 0 -0.19 CISPEP 4 ALA B 22 GLY B 23 0 -26.44 CISPEP 5 ALA B 50 ALA B 51 0 1.66 CISPEP 6 ALA B 51 LEU B 52 0 4.34 CISPEP 7 ASP B 53 ALA B 54 0 8.56 CISPEP 8 GLU C 21 ALA C 22 0 -0.04 CISPEP 9 GLY C 23 GLU C 24 0 -6.48 CISPEP 10 TYR C 47 LYS C 48 0 -13.74 CRYST1 71.951 71.951 68.007 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013898 0.008024 0.000000 0.00000 SCALE2 0.000000 0.016048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014704 0.00000