HEADER REPLICATION 10-JUN-09 3HSL TITLE THE CRYSTAL STRUCTURE OF PF-8, THE DNA POLYMERASE ACCESSORY SUBUNIT TITLE 2 FROM KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF59; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: UNP RESIDUES 1-304; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8; SOURCE 3 ORGANISM_COMMON: HHV-8; SOURCE 4 ORGANISM_TAXID: 37296; SOURCE 5 GENE: PF-8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PROCESSIVITY, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR J.L.BALTZ,D.J.FILMAN,M.CIUSTEA,J.E.Y.SILVERMAN,C.L.LAUTENSCHLAGER, AUTHOR 2 D.M.COEN,R.P.RICCIARDI,J.M.HOGLE REVDAT 3 21-FEB-24 3HSL 1 SEQADV REVDAT 2 13-JUL-11 3HSL 1 VERSN REVDAT 1 24-NOV-09 3HSL 0 JRNL AUTH J.L.BALTZ,D.J.FILMAN,M.CIUSTEA,J.E.SILVERMAN, JRNL AUTH 2 C.L.LAUTENSCHLAGER,D.M.COEN,R.P.RICCIARDI,J.M.HOGLE JRNL TITL THE CRYSTAL STRUCTURE OF PF-8, THE DNA POLYMERASE ACCESSORY JRNL TITL 2 SUBUNIT FROM KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS. JRNL REF J.VIROL. V. 83 12215 2009 JRNL REFN ISSN 0022-538X JRNL PMID 19759157 JRNL DOI 10.1128/JVI.01158-09 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1394 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2137 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.77000 REMARK 3 B22 (A**2) : 1.77000 REMARK 3 B33 (A**2) : -2.66000 REMARK 3 B12 (A**2) : 0.89000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.964 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.394 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.296 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.483 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.890 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.869 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2175 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2957 ; 1.956 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 285 ; 1.788 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;24.479 ;22.987 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 353 ;10.187 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.172 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1583 ; 0.001 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1411 ; 0.704 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2276 ; 1.362 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 764 ; 1.289 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 681 ; 2.186 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 4 X 300 REMARK 3 RESIDUE RANGE : X 305 X 308 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7496 -13.9858 203.1113 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.1561 REMARK 3 T33: 0.1071 T12: 0.0255 REMARK 3 T13: 0.0556 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 5.0810 L22: 2.6258 REMARK 3 L33: 5.5293 L12: 2.6694 REMARK 3 L13: 4.0525 L23: 2.6152 REMARK 3 S TENSOR REMARK 3 S11: -0.1306 S12: 0.4515 S13: 0.1429 REMARK 3 S21: -0.2376 S22: -0.0098 S23: 0.1387 REMARK 3 S31: -0.2792 S32: 0.1480 S33: 0.1404 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HSL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10495 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54200 REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.75 M (NH4)2SO4, 100 MM TRIS PH 7.4, REMARK 280 AND 20 MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 128.70000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 257.40000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 193.05000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 321.75000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.35000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 128.70000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 257.40000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 321.75000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 193.05000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 64.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 28.91500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -50.08225 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 450.45000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X -4 REMARK 465 PRO X -3 REMARK 465 ILE X -2 REMARK 465 SER X -1 REMARK 465 GLU X 0 REMARK 465 PHE X 1 REMARK 465 PRO X 2 REMARK 465 VAL X 3 REMARK 465 LYS X 113 REMARK 465 GLY X 114 REMARK 465 GLU X 115 REMARK 465 ALA X 116 REMARK 465 CYS X 117 REMARK 465 ASP X 118 REMARK 465 THR X 119 REMARK 465 GLY X 120 REMARK 465 ALA X 121 REMARK 465 GLN X 122 REMARK 465 ASN X 301 REMARK 465 ARG X 302 REMARK 465 SER X 303 REMARK 465 VAL X 304 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP X 4 CG OD1 OD2 REMARK 470 LYS X 18 CG CD CE NZ REMARK 470 LYS X 63 CG CD CE NZ REMARK 470 ARG X 112 CG CD NE CZ NH1 NH2 REMARK 470 PRO X 123 CG CD REMARK 470 GLU X 158 CG CD OE1 OE2 REMARK 470 LYS X 171 CG CD CE NZ REMARK 470 LYS X 178 CG CD CE NZ REMARK 470 LYS X 216 CG CD CE NZ REMARK 470 LYS X 220 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP X 134 N LEU X 136 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY X 91 N - CA - C ANGL. DEV. = -15.0 DEGREES REMARK 500 LEU X 228 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER X 50 148.21 -179.03 REMARK 500 SER X 76 -34.81 64.87 REMARK 500 ASN X 135 38.91 -59.00 REMARK 500 LEU X 136 -37.26 -133.32 REMARK 500 GLN X 147 42.80 -108.29 REMARK 500 HIS X 154 -66.19 -106.15 REMARK 500 ASP X 155 60.18 -67.26 REMARK 500 ARG X 162 -4.18 -27.58 REMARK 500 THR X 163 153.45 -38.54 REMARK 500 THR X 185 -155.77 -127.13 REMARK 500 LEU X 228 29.09 -159.21 REMARK 500 LYS X 231 52.83 -55.09 REMARK 500 TRP X 264 -68.51 -139.61 REMARK 500 GLU X 275 2.95 53.90 REMARK 500 REMARK 500 REMARK: NULL DBREF 3HSL X 2 304 UNP Q77ZG5 Q77ZG5_HHV8 2 304 SEQADV 3HSL GLY X -4 UNP Q77ZG5 EXPRESSION TAG SEQADV 3HSL PRO X -3 UNP Q77ZG5 EXPRESSION TAG SEQADV 3HSL ILE X -2 UNP Q77ZG5 EXPRESSION TAG SEQADV 3HSL SER X -1 UNP Q77ZG5 EXPRESSION TAG SEQADV 3HSL GLU X 0 UNP Q77ZG5 EXPRESSION TAG SEQADV 3HSL PHE X 1 UNP Q77ZG5 EXPRESSION TAG SEQRES 1 X 309 GLY PRO ILE SER GLU PHE PRO VAL ASP PHE HIS TYR GLY SEQRES 2 X 309 VAL ARG VAL ASP VAL THR LEU LEU SER LYS ILE ARG ARG SEQRES 3 X 309 VAL ASN GLU HIS ILE LYS SER ALA THR LYS THR GLY VAL SEQRES 4 X 309 VAL GLN VAL HIS GLY SER ALA CYS THR PRO THR LEU SER SEQRES 5 X 309 VAL LEU SER SER VAL GLY THR ALA GLY VAL LEU GLY LEU SEQRES 6 X 309 ARG ILE LYS ASN ALA LEU THR PRO LEU VAL GLY HIS THR SEQRES 7 X 309 GLU GLY SER GLY ASP VAL SER PHE SER PHE ARG ASN THR SEQRES 8 X 309 SER VAL GLY SER GLY PHE THR HIS THR ARG GLU LEU PHE SEQRES 9 X 309 GLY ALA ASN VAL LEU ASP ALA GLY ILE ALA PHE TYR ARG SEQRES 10 X 309 LYS GLY GLU ALA CYS ASP THR GLY ALA GLN PRO GLN PHE SEQRES 11 X 309 VAL ARG THR THR ILE SER TYR GLY ASP ASN LEU THR SER SEQRES 12 X 309 THR VAL HIS LYS SER VAL VAL ASP GLN LYS GLY ILE LEU SEQRES 13 X 309 PRO PHE HIS ASP ARG MET GLU ALA GLY GLY ARG THR THR SEQRES 14 X 309 ARG LEU LEU LEU CYS GLY LYS THR GLY ALA PHE LEU LEU SEQRES 15 X 309 LYS TRP LEU ARG GLN GLN LYS THR LYS GLU ASP GLN THR SEQRES 16 X 309 VAL THR VAL SER VAL SER GLU THR LEU SER ILE VAL THR SEQRES 17 X 309 PHE SER LEU GLY GLY VAL SER LYS ILE ILE ASP PHE LYS SEQRES 18 X 309 PRO GLU THR LYS PRO VAL SER GLY TRP ASP GLY LEU LYS SEQRES 19 X 309 GLY LYS LYS SER VAL ASP VAL GLY VAL VAL HIS THR ASP SEQRES 20 X 309 ALA LEU SER ARG VAL SER LEU GLU SER LEU ILE ALA ALA SEQRES 21 X 309 LEU ARG LEU CYS LYS VAL PRO GLY TRP PHE THR PRO GLY SEQRES 22 X 309 LEU ILE TRP HIS SER ASN GLU ILE LEU GLU VAL GLU GLY SEQRES 23 X 309 VAL PRO THR GLY CYS GLN SER GLY ASP VAL LYS LEU SER SEQRES 24 X 309 VAL LEU LEU LEU GLU VAL ASN ARG SER VAL FORMUL 2 HOH *4(H2 O) HELIX 1 1 ASP X 12 LYS X 31 1 20 HELIX 2 2 THR X 93 PHE X 99 1 7 HELIX 3 3 CYS X 169 GLN X 182 1 14 HELIX 4 4 LEU X 249 CYS X 259 1 11 SHEET 1 A 5 LEU X 66 PRO X 68 0 SHEET 2 A 5 TYR X 7 VAL X 11 -1 N ARG X 10 O THR X 67 SHEET 3 A 5 VAL X 103 TYR X 111 -1 O PHE X 110 N TYR X 7 SHEET 4 A 5 PHE X 125 TYR X 132 -1 O SER X 131 N LEU X 104 SHEET 5 A 5 SER X 138 VAL X 144 -1 O SER X 143 N VAL X 126 SHEET 1 B10 ASP X 78 ARG X 84 0 SHEET 2 B10 VAL X 34 SER X 40 -1 N VAL X 35 O PHE X 83 SHEET 3 B10 PRO X 44 SER X 51 -1 O THR X 45 N HIS X 38 SHEET 4 B10 GLY X 56 ILE X 62 -1 O ILE X 62 N LEU X 46 SHEET 5 B10 VAL X 291 LEU X 297 -1 O LYS X 292 N ARG X 61 SHEET 6 B10 LEU X 277 PRO X 283 -1 N LEU X 277 O LEU X 297 SHEET 7 B10 PHE X 265 TRP X 271 -1 N GLY X 268 O GLU X 280 SHEET 8 B10 THR X 164 LEU X 167 -1 N THR X 164 O TRP X 271 SHEET 9 B10 VAL X 236 VAL X 238 -1 O VAL X 236 N LEU X 167 SHEET 10 B10 LYS X 216 PRO X 217 1 N LYS X 216 O GLY X 237 SHEET 1 C 4 VAL X 209 ASP X 214 0 SHEET 2 C 4 ILE X 201 LEU X 206 -1 N LEU X 206 O VAL X 209 SHEET 3 C 4 THR X 190 SER X 196 -1 N THR X 192 O SER X 205 SHEET 4 C 4 ALA X 243 SER X 248 -1 O VAL X 247 N VAL X 191 CISPEP 1 LYS X 229 GLY X 230 0 -1.34 CRYST1 57.830 57.830 386.100 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017292 0.009984 0.000000 0.00000 SCALE2 0.000000 0.019967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002590 0.00000