HEADER TRANSCRIPTION REGULATOR 10-JUN-09 3HSR TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS PROTEIN SARZ IN MIXED TITLE 2 DISULFIDE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR SARZ; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 7-142; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 426430; SOURCE 4 STRAIN: NEWMAN; SOURCE 5 GENE: NWMN_2286; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HELIX-TURN-HELIX, CYSTEINE DISULFIDE, MARR-FAMILY TRANSCRIPTIONAL KEYWDS 2 REGULATOR, DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 3 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR C.B.POOR,E.DUGUID,P.A.RICE,C.HE REVDAT 6 06-NOV-24 3HSR 1 REMARK REVDAT 5 06-SEP-23 3HSR 1 REMARK SEQADV LINK REVDAT 4 01-NOV-17 3HSR 1 REMARK REVDAT 3 13-JUL-11 3HSR 1 VERSN REVDAT 2 22-SEP-09 3HSR 1 JRNL REVDAT 1 07-JUL-09 3HSR 0 JRNL AUTH C.B.POOR,P.R.CHEN,E.DUGUID,P.A.RICE,C.HE JRNL TITL CRYSTAL STRUCTURES OF THE REDUCED, SULFENIC ACID, AND MIXED JRNL TITL 2 DISULFIDE FORMS OF SARZ, A REDOX ACTIVE GLOBAL REGULATOR IN JRNL TITL 3 STAPHYLOCOCCUS AUREUS. JRNL REF J.BIOL.CHEM. V. 284 23517 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19586910 JRNL DOI 10.1074/JBC.M109.015826 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 39522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1972 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1982 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : 1.50000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.38000 REMARK 3 B13 (A**2) : 0.12000 REMARK 3 B23 (A**2) : -0.62000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.202 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.274 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4777 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6477 ; 1.440 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 616 ; 5.340 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;35.020 ;25.215 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 966 ;15.762 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.916 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 735 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3531 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2849 ; 0.721 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4676 ; 1.275 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1928 ; 2.249 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1775 ; 3.630 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 30 REMARK 3 RESIDUE RANGE : A 106 A 142 REMARK 3 RESIDUE RANGE : B 3 B 30 REMARK 3 RESIDUE RANGE : B 106 B 140 REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 RESIDUE RANGE : B 1 B 144 REMARK 3 ORIGIN FOR THE GROUP (A): -6.5460 16.1500 0.3230 REMARK 3 T TENSOR REMARK 3 T11: -0.0401 T22: -0.0369 REMARK 3 T33: 0.0597 T12: 0.0504 REMARK 3 T13: -0.0436 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.3209 L22: 2.2809 REMARK 3 L33: 1.7415 L12: 1.4981 REMARK 3 L13: 0.4456 L23: 1.4676 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: -0.1347 S13: 0.3759 REMARK 3 S21: -0.0848 S22: -0.1333 S23: 0.3938 REMARK 3 S31: -0.2782 S32: -0.3128 S33: 0.2018 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 30 REMARK 3 RESIDUE RANGE : C 106 C 142 REMARK 3 RESIDUE RANGE : D 4 D 30 REMARK 3 RESIDUE RANGE : D 106 D 142 REMARK 3 RESIDUE RANGE : C 1 C 1 REMARK 3 RESIDUE RANGE : D 1 D 1 REMARK 3 ORIGIN FOR THE GROUP (A): -17.4710 42.7220 -11.1570 REMARK 3 T TENSOR REMARK 3 T11: -0.1301 T22: -0.0653 REMARK 3 T33: -0.1130 T12: 0.0000 REMARK 3 T13: -0.0033 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 1.6437 L22: 1.7650 REMARK 3 L33: 1.8555 L12: -0.4718 REMARK 3 L13: -0.2957 L23: 0.9283 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: 0.2158 S13: -0.1017 REMARK 3 S21: -0.0518 S22: -0.0350 S23: 0.0212 REMARK 3 S31: 0.1217 S32: -0.0375 S33: 0.0331 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1890 -5.1690 8.8400 REMARK 3 T TENSOR REMARK 3 T11: -0.0354 T22: -0.0575 REMARK 3 T33: -0.1565 T12: -0.0156 REMARK 3 T13: -0.0131 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 4.7394 L22: 4.1355 REMARK 3 L33: 2.4418 L12: 2.0927 REMARK 3 L13: 1.3845 L23: 0.6429 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: -0.2089 S13: -0.0133 REMARK 3 S21: 0.4455 S22: -0.0293 S23: -0.1521 REMARK 3 S31: 0.1084 S32: 0.1553 S33: 0.0120 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 105 REMARK 3 ORIGIN FOR THE GROUP (A): -19.8020 29.3180 14.5920 REMARK 3 T TENSOR REMARK 3 T11: -0.0157 T22: 0.0171 REMARK 3 T33: -0.0570 T12: 0.0450 REMARK 3 T13: -0.0240 T23: -0.0585 REMARK 3 L TENSOR REMARK 3 L11: 3.7212 L22: 3.7802 REMARK 3 L33: 5.3559 L12: -0.9768 REMARK 3 L13: 1.2085 L23: 0.4589 REMARK 3 S TENSOR REMARK 3 S11: -0.1414 S12: -0.4813 S13: 0.1910 REMARK 3 S21: 0.4132 S22: 0.0316 S23: 0.1959 REMARK 3 S31: -0.4508 S32: -0.4180 S33: 0.1098 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 31 C 105 REMARK 3 ORIGIN FOR THE GROUP (A): -30.4750 29.9960 -26.0660 REMARK 3 T TENSOR REMARK 3 T11: -0.0226 T22: 0.1172 REMARK 3 T33: -0.0548 T12: -0.0236 REMARK 3 T13: 0.0010 T23: -0.0525 REMARK 3 L TENSOR REMARK 3 L11: 4.4900 L22: 2.4562 REMARK 3 L33: 5.1574 L12: -0.0323 REMARK 3 L13: -1.6294 L23: 0.4852 REMARK 3 S TENSOR REMARK 3 S11: -0.1211 S12: 0.2789 S13: -0.3353 REMARK 3 S21: -0.2890 S22: 0.0552 S23: 0.1947 REMARK 3 S31: 0.4734 S32: -0.2874 S33: 0.0660 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 31 D 105 REMARK 3 ORIGIN FOR THE GROUP (A): -21.8090 64.3700 -19.5950 REMARK 3 T TENSOR REMARK 3 T11: -0.0521 T22: 0.0523 REMARK 3 T33: -0.1135 T12: 0.0595 REMARK 3 T13: 0.0055 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 2.5231 L22: 5.2261 REMARK 3 L33: 3.7217 L12: -2.1324 REMARK 3 L13: -0.5385 L23: -0.1034 REMARK 3 S TENSOR REMARK 3 S11: 0.1556 S12: 0.4619 S13: 0.1825 REMARK 3 S21: -0.5364 S22: -0.2590 S23: -0.2160 REMARK 3 S31: -0.1677 S32: 0.1971 S33: 0.1034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3HSR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40152 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.5410 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.29900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.3 REMARK 200 STARTING MODEL: PDB ENTRY 3HRM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M AMMONIUM ACETATE, REMARK 280 0.1 M TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS ONE OF THE TWO DIMERS FOUND IN REMARK 300 THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 GLU A 87 REMARK 465 GLU A 88 REMARK 465 LYS A 89 REMARK 465 ASP A 90 REMARK 465 GLU A 91 REMARK 465 ARG A 92 REMARK 465 ASN A 93 REMARK 465 GLU B 87 REMARK 465 GLU B 88 REMARK 465 LYS B 89 REMARK 465 ASP B 90 REMARK 465 GLU B 91 REMARK 465 ARG B 92 REMARK 465 ASN B 93 REMARK 465 GLU C 87 REMARK 465 GLU C 88 REMARK 465 LYS C 89 REMARK 465 ASP C 90 REMARK 465 GLU C 91 REMARK 465 ARG C 92 REMARK 465 ASN C 93 REMARK 465 GLY D 3 REMARK 465 SER D 4 REMARK 465 ARG D 86 REMARK 465 GLU D 87 REMARK 465 GLU D 88 REMARK 465 LYS D 89 REMARK 465 ASP D 90 REMARK 465 GLU D 91 REMARK 465 ARG D 92 REMARK 465 ASN D 93 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 86 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 86 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 133 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 13 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 141 -34.31 -133.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BT6 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BT6 C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BT6 D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 144 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HRM RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH THE LONE AND REACTIVE CYSTEINE OXIDIZED TO REMARK 900 SULFENIC ACID. REMARK 900 RELATED ID: 3HSE RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH THE LONE AND REACTIVE CYSTEINE IN THE REDUCED REMARK 900 FORM. DBREF 3HSR A 7 142 UNP A6QJM6 A6QJM6_STAAE 7 142 DBREF 3HSR B 7 142 UNP A6QJM6 A6QJM6_STAAE 7 142 DBREF 3HSR C 7 142 UNP A6QJM6 A6QJM6_STAAE 7 142 DBREF 3HSR D 7 142 UNP A6QJM6 A6QJM6_STAAE 7 142 SEQADV 3HSR GLY A 3 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR SER A 4 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR HIS A 5 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR MET A 6 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR GLY B 3 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR SER B 4 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR HIS B 5 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR MET B 6 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR GLY C 3 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR SER C 4 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR HIS C 5 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR MET C 6 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR GLY D 3 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR SER D 4 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR HIS D 5 UNP A6QJM6 EXPRESSION TAG SEQADV 3HSR MET D 6 UNP A6QJM6 EXPRESSION TAG SEQRES 1 A 140 GLY SER HIS MET TYR LEU SER LYS GLN LEU CYS PHE LEU SEQRES 2 A 140 PHE TYR VAL SER SER LYS GLU ILE ILE LYS LYS TYR THR SEQRES 3 A 140 ASN TYR LEU LYS GLU TYR ASP LEU THR TYR THR GLY TYR SEQRES 4 A 140 ILE VAL LEU MET ALA ILE GLU ASN ASP GLU LYS LEU ASN SEQRES 5 A 140 ILE LYS LYS LEU GLY GLU ARG VAL PHE LEU ASP SER GLY SEQRES 6 A 140 THR LEU THR PRO LEU LEU LYS LYS LEU GLU LYS LYS ASP SEQRES 7 A 140 TYR VAL VAL ARG THR ARG GLU GLU LYS ASP GLU ARG ASN SEQRES 8 A 140 LEU GLN ILE SER LEU THR GLU GLN GLY LYS ALA ILE LYS SEQRES 9 A 140 SER PRO LEU ALA GLU ILE SER VAL LYS VAL PHE ASN GLU SEQRES 10 A 140 PHE ASN ILE SER GLU ARG GLU ALA SER ASP ILE ILE ASN SEQRES 11 A 140 ASN LEU ARG ASN PHE VAL SER LYS ASN PHE SEQRES 1 B 140 GLY SER HIS MET TYR LEU SER LYS GLN LEU CYS PHE LEU SEQRES 2 B 140 PHE TYR VAL SER SER LYS GLU ILE ILE LYS LYS TYR THR SEQRES 3 B 140 ASN TYR LEU LYS GLU TYR ASP LEU THR TYR THR GLY TYR SEQRES 4 B 140 ILE VAL LEU MET ALA ILE GLU ASN ASP GLU LYS LEU ASN SEQRES 5 B 140 ILE LYS LYS LEU GLY GLU ARG VAL PHE LEU ASP SER GLY SEQRES 6 B 140 THR LEU THR PRO LEU LEU LYS LYS LEU GLU LYS LYS ASP SEQRES 7 B 140 TYR VAL VAL ARG THR ARG GLU GLU LYS ASP GLU ARG ASN SEQRES 8 B 140 LEU GLN ILE SER LEU THR GLU GLN GLY LYS ALA ILE LYS SEQRES 9 B 140 SER PRO LEU ALA GLU ILE SER VAL LYS VAL PHE ASN GLU SEQRES 10 B 140 PHE ASN ILE SER GLU ARG GLU ALA SER ASP ILE ILE ASN SEQRES 11 B 140 ASN LEU ARG ASN PHE VAL SER LYS ASN PHE SEQRES 1 C 140 GLY SER HIS MET TYR LEU SER LYS GLN LEU CYS PHE LEU SEQRES 2 C 140 PHE TYR VAL SER SER LYS GLU ILE ILE LYS LYS TYR THR SEQRES 3 C 140 ASN TYR LEU LYS GLU TYR ASP LEU THR TYR THR GLY TYR SEQRES 4 C 140 ILE VAL LEU MET ALA ILE GLU ASN ASP GLU LYS LEU ASN SEQRES 5 C 140 ILE LYS LYS LEU GLY GLU ARG VAL PHE LEU ASP SER GLY SEQRES 6 C 140 THR LEU THR PRO LEU LEU LYS LYS LEU GLU LYS LYS ASP SEQRES 7 C 140 TYR VAL VAL ARG THR ARG GLU GLU LYS ASP GLU ARG ASN SEQRES 8 C 140 LEU GLN ILE SER LEU THR GLU GLN GLY LYS ALA ILE LYS SEQRES 9 C 140 SER PRO LEU ALA GLU ILE SER VAL LYS VAL PHE ASN GLU SEQRES 10 C 140 PHE ASN ILE SER GLU ARG GLU ALA SER ASP ILE ILE ASN SEQRES 11 C 140 ASN LEU ARG ASN PHE VAL SER LYS ASN PHE SEQRES 1 D 140 GLY SER HIS MET TYR LEU SER LYS GLN LEU CYS PHE LEU SEQRES 2 D 140 PHE TYR VAL SER SER LYS GLU ILE ILE LYS LYS TYR THR SEQRES 3 D 140 ASN TYR LEU LYS GLU TYR ASP LEU THR TYR THR GLY TYR SEQRES 4 D 140 ILE VAL LEU MET ALA ILE GLU ASN ASP GLU LYS LEU ASN SEQRES 5 D 140 ILE LYS LYS LEU GLY GLU ARG VAL PHE LEU ASP SER GLY SEQRES 6 D 140 THR LEU THR PRO LEU LEU LYS LYS LEU GLU LYS LYS ASP SEQRES 7 D 140 TYR VAL VAL ARG THR ARG GLU GLU LYS ASP GLU ARG ASN SEQRES 8 D 140 LEU GLN ILE SER LEU THR GLU GLN GLY LYS ALA ILE LYS SEQRES 9 D 140 SER PRO LEU ALA GLU ILE SER VAL LYS VAL PHE ASN GLU SEQRES 10 D 140 PHE ASN ILE SER GLU ARG GLU ALA SER ASP ILE ILE ASN SEQRES 11 D 140 ASN LEU ARG ASN PHE VAL SER LYS ASN PHE HET BT6 A 1 7 HET ACT A 143 4 HET GOL A 144 6 HET ACT B 1 4 HET GOL B 143 6 HET GOL B 144 6 HET BT6 C 1 7 HET ACT C 143 4 HET GOL C 144 6 HET BT6 D 1 7 HET ACT D 143 4 HET GOL D 144 6 HETNAM BT6 BENZENETHIOL HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 BT6 3(C6 H6 S) FORMUL 6 ACT 4(C2 H3 O2 1-) FORMUL 7 GOL 5(C3 H8 O3) FORMUL 17 HOH *189(H2 O) HELIX 1 2 GLU A 33 ASP A 35 5 3 HELIX 2 3 THR A 37 ILE A 47 1 11 HELIX 3 4 ILE A 55 PHE A 63 1 9 HELIX 4 5 ASP A 65 LYS A 79 1 15 HELIX 5 6 THR A 99 ILE A 105 1 7 HELIX 6 7 ILE A 105 GLU A 119 1 15 HELIX 7 8 SER A 123 LYS A 140 1 18 HELIX 8 9 GLY B 3 GLU B 33 1 31 HELIX 9 10 THR B 37 ILE B 47 1 11 HELIX 10 11 ASN B 54 PHE B 63 1 10 HELIX 11 12 ASP B 65 LYS B 79 1 15 HELIX 12 13 THR B 99 PHE B 120 1 22 HELIX 13 14 SER B 123 LYS B 140 1 18 HELIX 14 15 GLY C 3 LYS C 32 1 30 HELIX 15 16 GLU C 33 ASP C 35 5 3 HELIX 16 17 THR C 37 ILE C 47 1 11 HELIX 17 18 ASN C 54 PHE C 63 1 10 HELIX 18 19 ASP C 65 LYS C 79 1 15 HELIX 19 20 THR C 99 ILE C 105 1 7 HELIX 20 21 ILE C 105 PHE C 120 1 16 HELIX 21 22 SER C 123 PHE C 142 1 20 HELIX 22 23 HIS D 5 LYS D 32 1 28 HELIX 23 24 GLU D 33 ASP D 35 5 3 HELIX 24 25 THR D 37 ALA D 46 1 10 HELIX 25 26 ILE D 55 PHE D 63 1 9 HELIX 26 27 ASP D 65 LYS D 79 1 15 HELIX 27 28 THR D 99 PHE D 120 1 22 HELIX 28 29 SER D 123 PHE D 142 1 20 SHEET 1 A 3 LYS A 52 ASN A 54 0 SHEET 2 A 3 GLN A 95 LEU A 98 -1 O ILE A 96 N LEU A 53 SHEET 3 A 3 VAL A 82 THR A 85 -1 N THR A 85 O GLN A 95 SHEET 1 B 2 VAL B 82 THR B 85 0 SHEET 2 B 2 GLN B 95 LEU B 98 -1 O GLN B 95 N THR B 85 SHEET 1 C 2 VAL C 82 ARG C 84 0 SHEET 2 C 2 ILE C 96 LEU C 98 -1 O SER C 97 N VAL C 83 SHEET 1 D 3 LEU D 53 ASN D 54 0 SHEET 2 D 3 GLN D 95 LEU D 98 -1 O ILE D 96 N LEU D 53 SHEET 3 D 3 VAL D 82 ARG D 84 -1 N VAL D 83 O SER D 97 LINK S1 BT6 A 1 SG CYS B 13 1555 1555 2.08 LINK S1 BT6 C 1 SG CYS C 13 1555 1555 2.00 LINK S1 BT6 D 1 SG CYS D 13 1555 1555 2.04 SITE 1 AC1 6 ILE A 42 MET A 45 SER A 113 LYS B 10 SITE 2 AC1 6 CYS B 13 PHE B 14 SITE 1 AC2 6 LEU A 36 THR A 37 LEU A 72 LYS A 75 SITE 2 AC2 6 LEU A 76 LYS A 79 SITE 1 AC3 3 GLU A 111 LYS A 115 ARG D 61 SITE 1 AC4 5 LEU B 36 THR B 37 GLY B 40 LEU B 76 SITE 2 AC4 5 LYS B 79 SITE 1 AC5 12 HOH A 152 LYS B 56 GLY B 59 GLU B 60 SITE 2 AC5 12 LEU B 64 ASP B 65 SER B 66 ASN B 121 SITE 3 AC5 12 ILE B 122 SER B 123 HOH B 147 HOH B 159 SITE 1 AC6 5 VAL A 114 PHE A 117 ASN A 118 HIS B 5 SITE 2 AC6 5 SER B 9 SITE 1 AC7 7 LYS C 10 CYS C 13 PHE C 14 TYR D 41 SITE 2 AC7 7 ILE D 42 MET D 45 SER D 113 SITE 1 AC8 5 LEU C 36 THR C 37 GLY C 40 LEU C 76 SITE 2 AC8 5 LYS C 79 SITE 1 AC9 10 LYS C 56 GLY C 59 GLU C 60 LEU C 64 SITE 2 AC9 10 ASP C 65 SER C 66 ASN C 121 ILE C 122 SITE 3 AC9 10 HOH C 145 HOH D 148 SITE 1 BC1 5 ILE C 23 TYR C 27 PHE C 120 CYS D 13 SITE 2 BC1 5 PHE D 137 SITE 1 BC2 6 LEU D 36 THR D 37 GLY D 40 LEU D 72 SITE 2 BC2 6 LYS D 75 LYS D 79 SITE 1 BC3 5 ARG A 61 HOH A 148 HOH A 156 VAL D 114 SITE 2 BC3 5 LYS D 115 CRYST1 38.240 62.840 67.200 64.40 75.81 82.58 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026151 -0.003406 -0.005713 0.00000 SCALE2 0.000000 0.016048 -0.007352 0.00000 SCALE3 0.000000 0.000000 0.016884 0.00000