HEADER HYDROLASE 10-JUN-09 3HSS TITLE A HIGHER RESOLUTION STRUCTURE OF RV0554 FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPLEXED WITH MALONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE BROMOPEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POSSIBLE PEROXIDASE BPOC (NON-HAEM PEROXIDASE); COMPND 5 EC: 1.11.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: BPOC, MT0580, RV0554; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA BETA HYDROLASE, OXIDOREDUCTASE, PEROXIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.JOHNSTON,E.N.BAKER REVDAT 6 21-FEB-24 3HSS 1 REMARK LINK REVDAT 5 01-NOV-17 3HSS 1 REMARK REVDAT 4 29-APR-15 3HSS 1 HETSYN VERSN REVDAT 3 09-MAR-11 3HSS 1 REMARK REVDAT 2 05-JAN-11 3HSS 1 JRNL REVDAT 1 26-MAY-10 3HSS 0 JRNL AUTH J.M.JOHNSTON,M.JIANG,Z.GUO,E.N.BAKER JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF RV0554 FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS: TESTING A PUTATIVE ROLE IN JRNL TITL 3 MENAQUINONE BIOSYNTHESIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 909 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 20693690 JRNL DOI 10.1107/S0907444910025771 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 54732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2782 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3676 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4092 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 516 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4269 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5807 ; 1.409 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 543 ; 5.082 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;32.683 ;23.109 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;12.453 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;17.599 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 642 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3343 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2694 ; 0.843 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4325 ; 1.528 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1575 ; 2.526 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1479 ; 4.197 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.00 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3HSS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.92 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95665 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54772 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 29.10 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 52.9640 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 25.90 REMARK 200 R MERGE FOR SHELL (I) : 0.67800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 95% ( 0.1M NAACETATE PH 4.92, 2% MDP, REMARK 280 15% ETHYLENE GLYCOL) WITH 5% 1.65M MALONIC ACID PROTEIN HAD PEP REMARK 280 ADDED TO IT AS WELL. , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.58100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.22700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.22700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.79050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.22700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.22700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.37150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.22700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.22700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.79050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.22700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.22700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 101.37150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.58100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PROTEIN IS MOSTLY A DIMER IN SOLUTION AND PISA PREDICTS REMARK 300 A DIMER IS LIKELY IN THE CRYSTAL TOO. THIS DIMER IS CONSISTENT WITH REMARK 300 THE ONE SEEN IN THE RELATED ENTRY STRUCTURE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -30 REMARK 465 SER A -29 REMARK 465 TYR A -28 REMARK 465 TYR A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 ASP A -20 REMARK 465 TYR A -19 REMARK 465 ASP A -18 REMARK 465 ILE A -17 REMARK 465 PRO A -16 REMARK 465 THR A -15 REMARK 465 THR A -14 REMARK 465 GLU A -13 REMARK 465 ALA A 262 REMARK 465 MET B -30 REMARK 465 SER B -29 REMARK 465 TYR B -28 REMARK 465 TYR B -27 REMARK 465 HIS B -26 REMARK 465 HIS B -25 REMARK 465 HIS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 ASP B -20 REMARK 465 TYR B -19 REMARK 465 ASP B -18 REMARK 465 ILE B -17 REMARK 465 PRO B -16 REMARK 465 THR B -15 REMARK 465 THR B -14 REMARK 465 GLU B -13 REMARK 465 ASN B -12 REMARK 465 LEU B -11 REMARK 465 TYR B -10 REMARK 465 PHE B -9 REMARK 465 GLN B -8 REMARK 465 GLY B -7 REMARK 465 ALA B -6 REMARK 465 MET B -5 REMARK 465 ASP B -4 REMARK 465 PRO B -3 REMARK 465 GLU B -2 REMARK 465 PHE B -1 REMARK 465 ARG B 0 REMARK 465 VAL B 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 26 CA CB CG CD NE CZ NH1 REMARK 480 ARG A 26 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 87 -118.07 53.10 REMARK 500 SER A 87 -122.93 61.10 REMARK 500 LEU A 240 39.64 -92.09 REMARK 500 SER B 87 -123.00 51.64 REMARK 500 SER B 87 -119.89 46.43 REMARK 500 LEU B 240 42.70 -98.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 268 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 223 O REMARK 620 2 LEU A 226 O 85.5 REMARK 620 3 GLY A 229 O 88.8 100.9 REMARK 620 4 HOH A 537 O 90.2 175.6 80.1 REMARK 620 5 HOH A 538 O 160.6 93.5 72.3 90.9 REMARK 620 6 HOH A 544 O 112.7 94.2 154.7 86.4 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 264 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 223 O REMARK 620 2 LEU B 226 O 87.0 REMARK 620 3 GLY B 229 O 88.2 94.3 REMARK 620 4 HOH B 465 O 100.8 171.8 83.7 REMARK 620 5 HOH B 466 O 155.7 91.2 67.7 80.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 5188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA B 5188 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA B 265 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E3A RELATED DB: PDB REMARK 900 THE STRUCTURE OF RV0554 FROM MYCOBACTERIUM TUBERCULOSIS DBREF 3HSS A 2 262 UNP O06420 O06420_MYCTU 2 262 DBREF 3HSS B 2 262 UNP O06420 O06420_MYCTU 2 262 SEQADV 3HSS MET A -30 UNP O06420 EXPRESSION TAG SEQADV 3HSS SER A -29 UNP O06420 EXPRESSION TAG SEQADV 3HSS TYR A -28 UNP O06420 EXPRESSION TAG SEQADV 3HSS TYR A -27 UNP O06420 EXPRESSION TAG SEQADV 3HSS HIS A -26 UNP O06420 EXPRESSION TAG SEQADV 3HSS HIS A -25 UNP O06420 EXPRESSION TAG SEQADV 3HSS HIS A -24 UNP O06420 EXPRESSION TAG SEQADV 3HSS HIS A -23 UNP O06420 EXPRESSION TAG SEQADV 3HSS HIS A -22 UNP O06420 EXPRESSION TAG SEQADV 3HSS HIS A -21 UNP O06420 EXPRESSION TAG SEQADV 3HSS ASP A -20 UNP O06420 EXPRESSION TAG SEQADV 3HSS TYR A -19 UNP O06420 EXPRESSION TAG SEQADV 3HSS ASP A -18 UNP O06420 EXPRESSION TAG SEQADV 3HSS ILE A -17 UNP O06420 EXPRESSION TAG SEQADV 3HSS PRO A -16 UNP O06420 EXPRESSION TAG SEQADV 3HSS THR A -15 UNP O06420 EXPRESSION TAG SEQADV 3HSS THR A -14 UNP O06420 EXPRESSION TAG SEQADV 3HSS GLU A -13 UNP O06420 EXPRESSION TAG SEQADV 3HSS ASN A -12 UNP O06420 EXPRESSION TAG SEQADV 3HSS LEU A -11 UNP O06420 EXPRESSION TAG SEQADV 3HSS TYR A -10 UNP O06420 EXPRESSION TAG SEQADV 3HSS PHE A -9 UNP O06420 EXPRESSION TAG SEQADV 3HSS GLN A -8 UNP O06420 EXPRESSION TAG SEQADV 3HSS GLY A -7 UNP O06420 EXPRESSION TAG SEQADV 3HSS ALA A -6 UNP O06420 EXPRESSION TAG SEQADV 3HSS MET A -5 UNP O06420 EXPRESSION TAG SEQADV 3HSS ASP A -4 UNP O06420 EXPRESSION TAG SEQADV 3HSS PRO A -3 UNP O06420 EXPRESSION TAG SEQADV 3HSS GLU A -2 UNP O06420 EXPRESSION TAG SEQADV 3HSS PHE A -1 UNP O06420 EXPRESSION TAG SEQADV 3HSS ARG A 0 UNP O06420 EXPRESSION TAG SEQADV 3HSS VAL A 1 UNP O06420 EXPRESSION TAG SEQADV 3HSS MET B -30 UNP O06420 EXPRESSION TAG SEQADV 3HSS SER B -29 UNP O06420 EXPRESSION TAG SEQADV 3HSS TYR B -28 UNP O06420 EXPRESSION TAG SEQADV 3HSS TYR B -27 UNP O06420 EXPRESSION TAG SEQADV 3HSS HIS B -26 UNP O06420 EXPRESSION TAG SEQADV 3HSS HIS B -25 UNP O06420 EXPRESSION TAG SEQADV 3HSS HIS B -24 UNP O06420 EXPRESSION TAG SEQADV 3HSS HIS B -23 UNP O06420 EXPRESSION TAG SEQADV 3HSS HIS B -22 UNP O06420 EXPRESSION TAG SEQADV 3HSS HIS B -21 UNP O06420 EXPRESSION TAG SEQADV 3HSS ASP B -20 UNP O06420 EXPRESSION TAG SEQADV 3HSS TYR B -19 UNP O06420 EXPRESSION TAG SEQADV 3HSS ASP B -18 UNP O06420 EXPRESSION TAG SEQADV 3HSS ILE B -17 UNP O06420 EXPRESSION TAG SEQADV 3HSS PRO B -16 UNP O06420 EXPRESSION TAG SEQADV 3HSS THR B -15 UNP O06420 EXPRESSION TAG SEQADV 3HSS THR B -14 UNP O06420 EXPRESSION TAG SEQADV 3HSS GLU B -13 UNP O06420 EXPRESSION TAG SEQADV 3HSS ASN B -12 UNP O06420 EXPRESSION TAG SEQADV 3HSS LEU B -11 UNP O06420 EXPRESSION TAG SEQADV 3HSS TYR B -10 UNP O06420 EXPRESSION TAG SEQADV 3HSS PHE B -9 UNP O06420 EXPRESSION TAG SEQADV 3HSS GLN B -8 UNP O06420 EXPRESSION TAG SEQADV 3HSS GLY B -7 UNP O06420 EXPRESSION TAG SEQADV 3HSS ALA B -6 UNP O06420 EXPRESSION TAG SEQADV 3HSS MET B -5 UNP O06420 EXPRESSION TAG SEQADV 3HSS ASP B -4 UNP O06420 EXPRESSION TAG SEQADV 3HSS PRO B -3 UNP O06420 EXPRESSION TAG SEQADV 3HSS GLU B -2 UNP O06420 EXPRESSION TAG SEQADV 3HSS PHE B -1 UNP O06420 EXPRESSION TAG SEQADV 3HSS ARG B 0 UNP O06420 EXPRESSION TAG SEQADV 3HSS VAL B 1 UNP O06420 EXPRESSION TAG SEQRES 1 A 293 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 293 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 293 ASP PRO GLU PHE ARG VAL ILE ASN LEU ALA TYR ASP ASP SEQRES 4 A 293 ASN GLY THR GLY ASP PRO VAL VAL PHE ILE ALA GLY ARG SEQRES 5 A 293 GLY GLY ALA GLY ARG THR TRP HIS PRO HIS GLN VAL PRO SEQRES 6 A 293 ALA PHE LEU ALA ALA GLY TYR ARG CYS ILE THR PHE ASP SEQRES 7 A 293 ASN ARG GLY ILE GLY ALA THR GLU ASN ALA GLU GLY PHE SEQRES 8 A 293 THR THR GLN THR MET VAL ALA ASP THR ALA ALA LEU ILE SEQRES 9 A 293 GLU THR LEU ASP ILE ALA PRO ALA ARG VAL VAL GLY VAL SEQRES 10 A 293 SER MET GLY ALA PHE ILE ALA GLN GLU LEU MET VAL VAL SEQRES 11 A 293 ALA PRO GLU LEU VAL SER SER ALA VAL LEU MET ALA THR SEQRES 12 A 293 ARG GLY ARG LEU ASP ARG ALA ARG GLN PHE PHE ASN LYS SEQRES 13 A 293 ALA GLU ALA GLU LEU TYR ASP SER GLY VAL GLN LEU PRO SEQRES 14 A 293 PRO THR TYR ASP ALA ARG ALA ARG LEU LEU GLU ASN PHE SEQRES 15 A 293 SER ARG LYS THR LEU ASN ASP ASP VAL ALA VAL GLY ASP SEQRES 16 A 293 TRP ILE ALA MET PHE SER MET TRP PRO ILE LYS SER THR SEQRES 17 A 293 PRO GLY LEU ARG CYS GLN LEU ASP CYS ALA PRO GLN THR SEQRES 18 A 293 ASN ARG LEU PRO ALA TYR ARG ASN ILE ALA ALA PRO VAL SEQRES 19 A 293 LEU VAL ILE GLY PHE ALA ASP ASP VAL VAL THR PRO PRO SEQRES 20 A 293 TYR LEU GLY ARG GLU VAL ALA ASP ALA LEU PRO ASN GLY SEQRES 21 A 293 ARG TYR LEU GLN ILE PRO ASP ALA GLY HIS LEU GLY PHE SEQRES 22 A 293 PHE GLU ARG PRO GLU ALA VAL ASN THR ALA MET LEU LYS SEQRES 23 A 293 PHE PHE ALA SER VAL LYS ALA SEQRES 1 B 293 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 B 293 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 B 293 ASP PRO GLU PHE ARG VAL ILE ASN LEU ALA TYR ASP ASP SEQRES 4 B 293 ASN GLY THR GLY ASP PRO VAL VAL PHE ILE ALA GLY ARG SEQRES 5 B 293 GLY GLY ALA GLY ARG THR TRP HIS PRO HIS GLN VAL PRO SEQRES 6 B 293 ALA PHE LEU ALA ALA GLY TYR ARG CYS ILE THR PHE ASP SEQRES 7 B 293 ASN ARG GLY ILE GLY ALA THR GLU ASN ALA GLU GLY PHE SEQRES 8 B 293 THR THR GLN THR MET VAL ALA ASP THR ALA ALA LEU ILE SEQRES 9 B 293 GLU THR LEU ASP ILE ALA PRO ALA ARG VAL VAL GLY VAL SEQRES 10 B 293 SER MET GLY ALA PHE ILE ALA GLN GLU LEU MET VAL VAL SEQRES 11 B 293 ALA PRO GLU LEU VAL SER SER ALA VAL LEU MET ALA THR SEQRES 12 B 293 ARG GLY ARG LEU ASP ARG ALA ARG GLN PHE PHE ASN LYS SEQRES 13 B 293 ALA GLU ALA GLU LEU TYR ASP SER GLY VAL GLN LEU PRO SEQRES 14 B 293 PRO THR TYR ASP ALA ARG ALA ARG LEU LEU GLU ASN PHE SEQRES 15 B 293 SER ARG LYS THR LEU ASN ASP ASP VAL ALA VAL GLY ASP SEQRES 16 B 293 TRP ILE ALA MET PHE SER MET TRP PRO ILE LYS SER THR SEQRES 17 B 293 PRO GLY LEU ARG CYS GLN LEU ASP CYS ALA PRO GLN THR SEQRES 18 B 293 ASN ARG LEU PRO ALA TYR ARG ASN ILE ALA ALA PRO VAL SEQRES 19 B 293 LEU VAL ILE GLY PHE ALA ASP ASP VAL VAL THR PRO PRO SEQRES 20 B 293 TYR LEU GLY ARG GLU VAL ALA ASP ALA LEU PRO ASN GLY SEQRES 21 B 293 ARG TYR LEU GLN ILE PRO ASP ALA GLY HIS LEU GLY PHE SEQRES 22 B 293 PHE GLU ARG PRO GLU ALA VAL ASN THR ALA MET LEU LYS SEQRES 23 B 293 PHE PHE ALA SER VAL LYS ALA HET TRS A 263 8 HET EDO A 264 4 HET MLA A5188 7 HET EDO A 265 4 HET EDO A 266 4 HET EDO A 267 4 HET NA A 268 1 HET ACT A 269 4 HET EDO A 270 4 HET MLA B5188 7 HET EDO B 263 4 HET NA B 264 1 HET MLA B 265 7 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM EDO 1,2-ETHANEDIOL HETNAM MLA MALONIC ACID HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETSYN TRS TRIS BUFFER HETSYN EDO ETHYLENE GLYCOL HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 4 EDO 6(C2 H6 O2) FORMUL 5 MLA 3(C3 H4 O4) FORMUL 9 NA 2(NA 1+) FORMUL 10 ACT C2 H3 O2 1- FORMUL 16 HOH *516(H2 O) HELIX 1 1 ALA A 24 HIS A 29 5 6 HELIX 2 2 GLN A 32 ALA A 39 1 8 HELIX 3 3 ILE A 51 GLU A 55 5 5 HELIX 4 4 THR A 61 ASP A 77 1 17 HELIX 5 5 SER A 87 ALA A 100 1 14 HELIX 6 6 ASP A 117 GLY A 134 1 18 HELIX 7 7 PRO A 138 PHE A 151 1 14 HELIX 8 8 SER A 152 ASN A 157 1 6 HELIX 9 9 ASP A 158 TRP A 172 1 15 HELIX 10 10 THR A 177 ASP A 185 1 9 HELIX 11 11 ARG A 192 ARG A 197 1 6 HELIX 12 12 PRO A 215 LEU A 226 1 12 HELIX 13 13 LEU A 240 ARG A 245 1 6 HELIX 14 14 ARG A 245 SER A 259 1 15 HELIX 15 15 ALA B 24 HIS B 29 5 6 HELIX 16 16 GLN B 32 ALA B 39 1 8 HELIX 17 17 ILE B 51 GLU B 55 5 5 HELIX 18 18 THR B 61 LEU B 76 1 16 HELIX 19 19 SER B 87 ALA B 100 1 14 HELIX 20 20 ASP B 117 GLY B 134 1 18 HELIX 21 21 PRO B 138 PHE B 151 1 14 HELIX 22 22 SER B 152 ASN B 157 1 6 HELIX 23 23 ASP B 158 TRP B 172 1 15 HELIX 24 24 THR B 177 LEU B 184 1 8 HELIX 25 25 ARG B 192 ARG B 197 1 6 HELIX 26 26 PRO B 215 LEU B 226 1 12 HELIX 27 27 LEU B 240 ARG B 245 1 6 HELIX 28 28 ARG B 245 VAL B 260 1 16 SHEET 1 A 8 LEU A -11 MET A -5 0 SHEET 2 A 8 VAL A 1 ASN A 9 -1 O ILE A 2 N GLY A -7 SHEET 3 A 8 TYR A 41 PHE A 46 -1 O CYS A 43 N ASN A 9 SHEET 4 A 8 ASP A 13 ILE A 18 1 N VAL A 15 O ILE A 44 SHEET 5 A 8 ALA A 81 VAL A 86 1 O VAL A 84 N ILE A 18 SHEET 6 A 8 VAL A 104 MET A 110 1 O MET A 110 N GLY A 85 SHEET 7 A 8 VAL A 203 PHE A 208 1 O LEU A 204 N LEU A 109 SHEET 8 A 8 GLY A 229 ILE A 234 1 O ARG A 230 N VAL A 205 SHEET 1 B 7 TYR B 6 ASN B 9 0 SHEET 2 B 7 ARG B 42 PHE B 46 -1 O THR B 45 N ASP B 7 SHEET 3 B 7 PRO B 14 ILE B 18 1 N VAL B 15 O ILE B 44 SHEET 4 B 7 ALA B 81 VAL B 86 1 O ARG B 82 N VAL B 16 SHEET 5 B 7 VAL B 104 MET B 110 1 O MET B 110 N GLY B 85 SHEET 6 B 7 VAL B 203 PHE B 208 1 O LEU B 204 N LEU B 109 SHEET 7 B 7 GLY B 229 ILE B 234 1 O ARG B 230 N VAL B 205 LINK O ALA A 223 NA NA A 268 1555 1555 2.31 LINK O LEU A 226 NA NA A 268 1555 1555 2.40 LINK O GLY A 229 NA NA A 268 1555 1555 2.70 LINK NA NA A 268 O HOH A 537 1555 1555 2.42 LINK NA NA A 268 O HOH A 538 1555 1555 2.26 LINK NA NA A 268 O HOH A 544 1555 1555 2.44 LINK O ALA B 223 NA NA B 264 1555 1555 2.37 LINK O LEU B 226 NA NA B 264 1555 1555 2.30 LINK O GLY B 229 NA NA B 264 1555 1555 2.97 LINK NA NA B 264 O HOH B 465 1555 1555 2.40 LINK NA NA B 264 O HOH B 466 1555 1555 2.14 CISPEP 1 ALA A 79 PRO A 80 0 -9.96 CISPEP 2 ALA B 79 PRO B 80 0 -1.77 SITE 1 AC1 9 ARG A 21 SER A 87 MET A 88 ARG A 113 SITE 2 AC1 9 GLN A 183 LEU A 184 ACT A 269 HOH A 425 SITE 3 AC1 9 HOH A 430 SITE 1 AC2 6 LEU A 156 HOH A 352 HOH A 353 HOH A 354 SITE 2 AC2 6 ARG B 118 ALA B 119 SITE 1 AC3 7 THR A 27 ARG A 146 MET A 168 LEU A 240 SITE 2 AC3 7 PHE A 243 EDO A 265 HOH A 467 SITE 1 AC4 5 ARG A 21 GLY A 23 EDO A 266 HOH A 421 SITE 2 AC4 5 MLA A5188 SITE 1 AC5 2 ARG A 21 EDO A 265 SITE 1 AC6 4 ALA A 161 ASP A 164 TRP A 165 HOH A 337 SITE 1 AC7 6 ALA A 223 LEU A 226 GLY A 229 HOH A 537 SITE 2 AC7 6 HOH A 538 HOH A 544 SITE 1 AC8 6 ARG A 113 LEU A 116 ASN A 124 ALA A 187 SITE 2 AC8 6 TRS A 263 HOH A 427 SITE 1 AC9 2 ASN A 198 MET B 171 SITE 1 BC1 9 ARG B 21 SER B 87 MET B 88 ARG B 120 SITE 2 BC1 9 PHE B 123 HIS B 239 HOH B 438 HOH B 439 SITE 3 BC1 9 HOH B 448 SITE 1 BC2 4 GLY B 12 ASP B 13 GLY B 40 HOH B 312 SITE 1 BC3 6 ALA B 223 ASP B 224 LEU B 226 GLY B 229 SITE 2 BC3 6 HOH B 465 HOH B 466 SITE 1 BC4 4 ARG B 146 LEU B 240 PHE B 243 HOH B 389 CRYST1 100.454 100.454 135.162 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009955 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007399 0.00000