HEADER PROTEIN BINDING, LIGASE 10-JUN-09 3HSV TITLE STRUCTURES OF SPOP-SUBSTRATE COMPLEXES: INSIGHTS INTO MOLECULAR TITLE 2 ARCHITECTURES OF BTB-CUL3 UBIQUITIN LIGASES: SPOPMATHX- TITLE 3 MACROH2ASBCPEP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECKLE-TYPE POZ PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HIB HOMOLOG 1,ROADKILL HOMOLOG 1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CORE HISTONE MACRO-H2A.1; COMPND 9 CHAIN: M; COMPND 10 SYNONYM: MH2A1,HISTONE H2A.Y,H2A/Y,MEDULLOBLASTOMA ANTIGEN MU-MB- COMPND 11 50.205; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPOP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS UBIQUITIN, E3, SPOP, MACROH2A, NUCLEUS, UBL CONJUGATION PATHWAY, KEYWDS 2 ALTERNATIVE SPLICING, CHROMATIN REGULATOR, CHROMOSOMAL PROTEIN, DNA- KEYWDS 3 BINDING, ISOPEPTIDE BOND, METHYLATION, NUCLEOSOME CORE, KEYWDS 4 PHOSPHOPROTEIN, UBL CONJUGATION, LIGASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHUANG,B.A.SCHULMAN,D.MILLER REVDAT 5 30-OCT-24 3HSV 1 REMARK REVDAT 4 06-SEP-23 3HSV 1 REMARK LINK REVDAT 3 19-FEB-20 3HSV 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV LINK REVDAT 2 27-OCT-09 3HSV 1 JRNL REVDAT 1 20-OCT-09 3HSV 0 JRNL AUTH M.ZHUANG,M.F.CALABRESE,J.LIU,M.B.WADDELL,A.NOURSE,M.HAMMEL, JRNL AUTH 2 D.J.MILLER,H.WALDEN,D.M.DUDA,S.N.SEYEDIN,T.HOGGARD, JRNL AUTH 3 J.W.HARPER,K.P.WHITE,B.A.SCHULMAN JRNL TITL STRUCTURES OF SPOP-SUBSTRATE COMPLEXES: INSIGHTS INTO JRNL TITL 2 MOLECULAR ARCHITECTURES OF BTB-CUL3 UBIQUITIN LIGASES. JRNL REF MOL.CELL V. 36 39 2009 JRNL REFN ISSN 1097-2765 JRNL PMID 19818708 JRNL DOI 10.1016/J.MOLCEL.2009.09.022 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 51030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2740 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3694 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.1550 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.2010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2223 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2391 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3229 ; 1.226 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 6.037 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;36.413 ;23.679 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 456 ;10.981 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.979 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 351 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1772 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1059 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1646 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 299 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.050 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 85 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 53 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1486 ; 1.098 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2322 ; 1.617 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1043 ; 2.194 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 893 ; 3.124 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2529 ; 1.171 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 412 ; 3.367 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2331 ; 2.303 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5140 20.8190 33.6310 REMARK 3 T TENSOR REMARK 3 T11: -0.0271 T22: -0.0251 REMARK 3 T33: -0.0178 T12: -0.0030 REMARK 3 T13: -0.0026 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.6757 L22: 0.6439 REMARK 3 L33: 1.0383 L12: 0.0995 REMARK 3 L13: -0.2980 L23: -0.3802 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: -0.0451 S13: -0.0210 REMARK 3 S21: -0.0414 S22: -0.0122 S23: 0.0228 REMARK 3 S31: 0.0169 S32: 0.0463 S33: 0.0341 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 164 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0440 39.3100 4.6670 REMARK 3 T TENSOR REMARK 3 T11: -0.0255 T22: -0.0253 REMARK 3 T33: -0.0127 T12: -0.0042 REMARK 3 T13: -0.0009 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.7410 L22: 0.4614 REMARK 3 L33: 0.8691 L12: -0.1650 REMARK 3 L13: -0.0567 L23: 0.0554 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0109 S13: 0.0058 REMARK 3 S21: 0.0195 S22: -0.0024 S23: -0.0011 REMARK 3 S31: 0.0032 S32: -0.0488 S33: 0.0086 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 170 M 181 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9010 25.6470 17.5460 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.0414 REMARK 3 T33: 0.0078 T12: -0.0291 REMARK 3 T13: -0.0216 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.1341 L22: 8.2120 REMARK 3 L33: 5.4773 L12: 0.4795 REMARK 3 L13: -0.5853 L23: -6.4506 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: 0.1309 S13: 0.0063 REMARK 3 S21: -0.3183 S22: 0.2669 S23: 0.0453 REMARK 3 S31: 0.3283 S32: -0.3139 S33: -0.2072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HSV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 31.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.11000 REMARK 200 FOR SHELL : 14.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2CR2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.47650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.54300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.47650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.54300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 GLY A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 GLY A 60 REMARK 465 ALA A 61 REMARK 465 ASN A 62 REMARK 465 ASP A 63 REMARK 465 LYS A 64 REMARK 465 ASP A 166 REMARK 465 GLY B 22 REMARK 465 SER B 23 REMARK 465 GLY B 24 REMARK 465 GLY B 25 REMARK 465 SER B 26 REMARK 465 GLY B 27 REMARK 465 GLY B 60 REMARK 465 ALA B 61 REMARK 465 ASN B 62 REMARK 465 ASP B 63 REMARK 465 LYS B 64 REMARK 465 GLN B 165 REMARK 465 ASP B 166 REMARK 465 PHE M 182 REMARK 465 THR M 183 REMARK 465 VAL M 184 REMARK 465 LEU M 185 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 CYS A 44 SG REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 GLN B 120 CG CD OE1 NE2 REMARK 470 GLU M 175 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 44 97.47 -52.34 REMARK 500 LYS A 135 71.05 -119.28 REMARK 500 GLN B 120 -65.77 73.46 REMARK 500 ARG B 121 169.64 179.91 REMARK 500 LYS B 135 56.59 -109.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 249 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 346 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B 180 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B 303 DISTANCE = 6.36 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 113 OE1 REMARK 620 2 GLU A 160 OE2 124.4 REMARK 620 3 HOH A 407 O 114.7 111.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 113 OE2 REMARK 620 2 GLU A 160 OE2 92.5 REMARK 620 3 HOH A 407 O 125.1 109.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN M 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 93 SG REMARK 620 2 ASP M 180 OD2 151.9 REMARK 620 3 HOH M 308 O 67.9 138.7 REMARK 620 4 HOH M 308 O 129.2 78.0 61.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 103 NZ REMARK 620 2 GLU B 113 OE1 100.2 REMARK 620 3 GLU B 160 OE2 75.4 127.7 REMARK 620 4 HOH B 408 O 132.8 107.2 113.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 113 OE2 REMARK 620 2 GLU B 160 OE2 94.7 REMARK 620 3 HOH B 408 O 126.9 102.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN M 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HQI RELATED DB: PDB REMARK 900 RELATED ID: 3HQL RELATED DB: PDB REMARK 900 RELATED ID: 3HQM RELATED DB: PDB REMARK 900 RELATED ID: 3HTM RELATED DB: PDB REMARK 900 RELATED ID: 3HU6 RELATED DB: PDB REMARK 900 RELATED ID: 3HVE RELATED DB: PDB DBREF 3HSV A 28 166 UNP O43791 SPOP_HUMAN 28 166 DBREF 3HSV B 28 166 UNP O43791 SPOP_HUMAN 28 166 DBREF 3HSV M 170 185 UNP O75367 H2AY_HUMAN 171 186 SEQADV 3HSV GLY A 22 UNP O43791 EXPRESSION TAG SEQADV 3HSV SER A 23 UNP O43791 EXPRESSION TAG SEQADV 3HSV GLY A 24 UNP O43791 EXPRESSION TAG SEQADV 3HSV GLY A 25 UNP O43791 EXPRESSION TAG SEQADV 3HSV SER A 26 UNP O43791 EXPRESSION TAG SEQADV 3HSV GLY A 27 UNP O43791 EXPRESSION TAG SEQADV 3HSV GLY A 140 UNP O43791 ASP 140 ENGINEERED MUTATION SEQADV 3HSV GLY B 22 UNP O43791 EXPRESSION TAG SEQADV 3HSV SER B 23 UNP O43791 EXPRESSION TAG SEQADV 3HSV GLY B 24 UNP O43791 EXPRESSION TAG SEQADV 3HSV GLY B 25 UNP O43791 EXPRESSION TAG SEQADV 3HSV SER B 26 UNP O43791 EXPRESSION TAG SEQADV 3HSV GLY B 27 UNP O43791 EXPRESSION TAG SEQADV 3HSV GLY B 140 UNP O43791 ASP 140 ENGINEERED MUTATION SEQADV 3HSV ACE M 170 UNP O75367 ALA 171 CONFLICT SEQRES 1 A 145 GLY SER GLY GLY SER GLY LYS VAL VAL LYS PHE SER TYR SEQRES 2 A 145 MET TRP THR ILE ASN ASN PHE SER PHE CYS ARG GLU GLU SEQRES 3 A 145 MET GLY GLU VAL ILE LYS SER SER THR PHE SER SER GLY SEQRES 4 A 145 ALA ASN ASP LYS LEU LYS TRP CYS LEU ARG VAL ASN PRO SEQRES 5 A 145 LYS GLY LEU ASP GLU GLU SER LYS ASP TYR LEU SER LEU SEQRES 6 A 145 TYR LEU LEU LEU VAL SER CYS PRO LYS SER GLU VAL ARG SEQRES 7 A 145 ALA LYS PHE LYS PHE SER ILE LEU ASN ALA LYS GLY GLU SEQRES 8 A 145 GLU THR LYS ALA MET GLU SER GLN ARG ALA TYR ARG PHE SEQRES 9 A 145 VAL GLN GLY LYS ASP TRP GLY PHE LYS LYS PHE ILE ARG SEQRES 10 A 145 ARG GLY PHE LEU LEU ASP GLU ALA ASN GLY LEU LEU PRO SEQRES 11 A 145 ASP ASP LYS LEU THR LEU PHE CYS GLU VAL SER VAL VAL SEQRES 12 A 145 GLN ASP SEQRES 1 B 145 GLY SER GLY GLY SER GLY LYS VAL VAL LYS PHE SER TYR SEQRES 2 B 145 MET TRP THR ILE ASN ASN PHE SER PHE CYS ARG GLU GLU SEQRES 3 B 145 MET GLY GLU VAL ILE LYS SER SER THR PHE SER SER GLY SEQRES 4 B 145 ALA ASN ASP LYS LEU LYS TRP CYS LEU ARG VAL ASN PRO SEQRES 5 B 145 LYS GLY LEU ASP GLU GLU SER LYS ASP TYR LEU SER LEU SEQRES 6 B 145 TYR LEU LEU LEU VAL SER CYS PRO LYS SER GLU VAL ARG SEQRES 7 B 145 ALA LYS PHE LYS PHE SER ILE LEU ASN ALA LYS GLY GLU SEQRES 8 B 145 GLU THR LYS ALA MET GLU SER GLN ARG ALA TYR ARG PHE SEQRES 9 B 145 VAL GLN GLY LYS ASP TRP GLY PHE LYS LYS PHE ILE ARG SEQRES 10 B 145 ARG GLY PHE LEU LEU ASP GLU ALA ASN GLY LEU LEU PRO SEQRES 11 B 145 ASP ASP LYS LEU THR LEU PHE CYS GLU VAL SER VAL VAL SEQRES 12 B 145 GLN ASP SEQRES 1 M 16 ACE ASP SER THR THR GLU GLY THR PRO ALA ASP GLY PHE SEQRES 2 M 16 THR VAL LEU HET ACE M 170 3 HET ZN A 2 2 HET ZN B 3 2 HET SO4 B 1 5 HET ZN M 1 1 HETNAM ACE ACETYL GROUP HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 3 ACE C2 H4 O FORMUL 4 ZN 3(ZN 2+) FORMUL 6 SO4 O4 S 2- FORMUL 8 HOH *400(H2 O) HELIX 1 1 ASN A 40 CYS A 44 5 5 HELIX 2 2 ASP A 77 LYS A 81 5 5 HELIX 3 3 ARG A 139 LEU A 143 1 5 HELIX 4 4 ASP A 144 GLY A 148 5 5 HELIX 5 5 LEU A 150 LYS A 154 5 5 HELIX 6 6 ASN B 40 CYS B 44 5 5 HELIX 7 7 ASP B 77 LYS B 81 5 5 HELIX 8 8 ARG B 139 LEU B 143 1 5 HELIX 9 9 ASP B 144 GLY B 148 5 5 HELIX 10 10 LEU B 150 LYS B 154 5 5 SHEET 1 A 4 VAL A 29 ILE A 38 0 SHEET 2 A 4 LEU A 155 VAL A 164 -1 O LEU A 155 N ILE A 38 SHEET 3 A 4 VAL A 98 LEU A 107 -1 N LYS A 101 O SER A 162 SHEET 4 A 4 GLU A 113 GLU A 118 -1 O THR A 114 N ILE A 106 SHEET 1 B 4 VAL A 29 ILE A 38 0 SHEET 2 B 4 LEU A 155 VAL A 164 -1 O LEU A 155 N ILE A 38 SHEET 3 B 4 VAL A 98 LEU A 107 -1 N LYS A 101 O SER A 162 SHEET 4 B 4 TYR A 123 PHE A 125 -1 O TYR A 123 N ALA A 100 SHEET 1 C 4 ILE A 52 LYS A 53 0 SHEET 2 C 4 TRP A 67 ASN A 72 -1 O VAL A 71 N ILE A 52 SHEET 3 C 4 TYR A 83 LEU A 90 -1 O LEU A 89 N CYS A 68 SHEET 4 C 4 ASP A 130 ARG A 138 -1 O TRP A 131 N LEU A 88 SHEET 1 D 4 VAL B 30 ILE B 38 0 SHEET 2 D 4 LEU B 155 VAL B 163 -1 O LEU B 155 N ILE B 38 SHEET 3 D 4 VAL B 98 LEU B 107 -1 N SER B 105 O PHE B 158 SHEET 4 D 4 GLU B 113 GLU B 118 -1 O MET B 117 N PHE B 104 SHEET 1 E 4 VAL B 30 ILE B 38 0 SHEET 2 E 4 LEU B 155 VAL B 163 -1 O LEU B 155 N ILE B 38 SHEET 3 E 4 VAL B 98 LEU B 107 -1 N SER B 105 O PHE B 158 SHEET 4 E 4 TYR B 123 PHE B 125 -1 O PHE B 125 N VAL B 98 SHEET 1 F 4 ILE B 52 LYS B 53 0 SHEET 2 F 4 LYS B 66 ASN B 72 -1 O VAL B 71 N ILE B 52 SHEET 3 F 4 TYR B 83 SER B 92 -1 O LEU B 89 N CYS B 68 SHEET 4 F 4 ASP B 130 ARG B 138 -1 O TRP B 131 N LEU B 88 LINK C ACE M 170 N ASP M 171 1555 1555 1.32 LINK ZN B ZN A 2 OE1 GLU A 113 1555 1555 2.15 LINK ZN A ZN A 2 OE2 GLU A 113 1555 1555 1.98 LINK ZN B ZN A 2 OE2 GLU A 160 1555 1555 2.12 LINK ZN A ZN A 2 OE2 GLU A 160 1555 1555 2.12 LINK ZN A ZN A 2 O HOH A 407 1555 1555 2.14 LINK ZN B ZN A 2 O HOH A 407 1555 1555 2.08 LINK SG CYS A 93 ZN ZN M 1 1555 1555 1.97 LINK ZN B ZN B 3 NZ BLYS B 103 1555 1555 2.31 LINK ZN B ZN B 3 OE1 GLU B 113 1555 1555 2.11 LINK ZN A ZN B 3 OE2 GLU B 113 1555 1555 1.95 LINK ZN A ZN B 3 OE2 GLU B 160 1555 1555 2.20 LINK ZN B ZN B 3 OE2 GLU B 160 1555 1555 2.08 LINK ZN A ZN B 3 O HOH B 408 1555 1555 2.24 LINK ZN B ZN B 3 O HOH B 408 1555 1555 2.09 LINK ZN ZN M 1 OD2 ASP M 180 1555 1555 2.27 LINK ZN ZN M 1 O BHOH M 308 1555 1555 2.07 LINK ZN ZN M 1 O AHOH M 308 1555 1555 1.97 SITE 1 AC1 4 LYS A 103 GLU A 113 GLU A 160 HOH A 407 SITE 1 AC2 4 LYS B 103 GLU B 113 GLU B 160 HOH B 408 SITE 1 AC3 8 HOH B 21 CYS B 44 ARG B 45 GLU B 46 SITE 2 AC3 8 ILE B 137 ARG B 138 HOH B 286 HOH B 378 SITE 1 AC4 5 CYS A 93 LYS B 134 ASP M 180 GLY M 181 SITE 2 AC4 5 HOH M 308 CRYST1 88.953 43.086 87.453 90.00 118.15 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011242 0.000000 0.006015 0.00000 SCALE2 0.000000 0.023209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012969 0.00000