HEADER TRANSPORT PROTEIN 11-JUN-09 3HSY TITLE HIGH RESOLUTION STRUCTURE OF A DIMERIC GLUR2 N-TERMINAL DOMAIN (NTD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 25-400; COMPND 5 SYNONYM: GLUR-2, GLUR-B, GLUR-K2, GLUTAMATE RECEPTOR IONOTROPIC, AMPA COMPND 6 2, AMPA-SELECTIVE GLUTAMATE RECEPTOR 2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRIA2, GLUR2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HIGH5; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS GLUTAMATE RECEPTOR, LIGAND-GATED ION CHANNEL, SYNAPSE, CELL JUNCTION, KEYWDS 2 CELL MEMBRANE, ENDOPLASMIC RETICULUM, GLYCOPROTEIN, ION TRANSPORT, KEYWDS 3 IONIC CHANNEL, LIPOPROTEIN, MEMBRANE, PALMITATE, PHOSPHOPROTEIN, KEYWDS 4 POSTSYNAPTIC CELL MEMBRANE, RECEPTOR, RNA EDITING, TRANSMEMBRANE, KEYWDS 5 TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.ROSSMANN,M.SUKUMARAN,A.C.PENN,D.B.VEPRINTSEV,I.H.GREGER REVDAT 4 29-JUL-20 3HSY 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 16-MAR-11 3HSY 1 JRNL REVDAT 2 09-MAR-11 3HSY 1 JRNL REVDAT 1 16-JUN-10 3HSY 0 JRNL AUTH M.ROSSMANN,M.SUKUMARAN,A.C.PENN,D.B.VEPRINTSEV,M.M.BABU, JRNL AUTH 2 I.H.GREGER JRNL TITL SUBUNIT-SELECTIVE N-TERMINAL DOMAIN ASSOCIATIONS ORGANIZE JRNL TITL 2 THE FORMATION OF AMPA RECEPTOR HETEROMERS JRNL REF EMBO J. V. 30 959 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21317873 JRNL DOI 10.1038/EMBOJ.2011.16 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.1_357 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 79763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5460 - 3.7700 1.00 8130 171 0.1680 0.1890 REMARK 3 2 3.7700 - 2.9920 1.00 7894 181 0.1690 0.1890 REMARK 3 3 2.9920 - 2.6140 1.00 7838 169 0.1790 0.2140 REMARK 3 4 2.6140 - 2.3750 1.00 7815 157 0.1680 0.1990 REMARK 3 5 2.3750 - 2.2050 1.00 7770 159 0.1610 0.1700 REMARK 3 6 2.2050 - 2.0750 1.00 7784 140 0.1640 0.2330 REMARK 3 7 2.0750 - 1.9710 1.00 7787 136 0.1670 0.1920 REMARK 3 8 1.9710 - 1.8850 1.00 7731 157 0.1770 0.2250 REMARK 3 9 1.8850 - 1.8130 1.00 7711 162 0.1990 0.2140 REMARK 3 10 1.8130 - 1.7500 1.00 7715 156 0.2210 0.2610 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 38.88 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18500 REMARK 3 B22 (A**2) : -0.25200 REMARK 3 B33 (A**2) : 0.06700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6101 REMARK 3 ANGLE : 1.064 8282 REMARK 3 CHIRALITY : 0.131 919 REMARK 3 PLANARITY : 0.005 1067 REMARK 3 DIHEDRAL : 13.186 2252 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:109) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1840 -2.6850 -4.2335 REMARK 3 T TENSOR REMARK 3 T11: 0.0342 T22: 0.0460 REMARK 3 T33: 0.0192 T12: 0.0001 REMARK 3 T13: 0.0029 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.4761 L22: 0.9151 REMARK 3 L33: 0.4871 L12: 0.4505 REMARK 3 L13: 0.2126 L23: 0.6752 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: -0.0358 S13: 0.0419 REMARK 3 S21: -0.0269 S22: -0.0781 S23: 0.0430 REMARK 3 S31: -0.0385 S32: -0.0772 S33: 0.0376 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 110:240) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0252 -18.8997 -25.3197 REMARK 3 T TENSOR REMARK 3 T11: 0.0408 T22: 0.0674 REMARK 3 T33: 0.0487 T12: 0.0106 REMARK 3 T13: 0.0020 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.0657 L22: 1.4551 REMARK 3 L33: 0.7634 L12: 1.1144 REMARK 3 L13: -0.2310 L23: -0.3016 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: -0.0093 S13: -0.0567 REMARK 3 S21: -0.0651 S22: 0.0120 S23: -0.0325 REMARK 3 S31: 0.0154 S32: 0.1465 S33: 0.0293 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 241:306) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8439 -13.6961 -5.5984 REMARK 3 T TENSOR REMARK 3 T11: 0.0374 T22: 0.1338 REMARK 3 T33: 0.0850 T12: -0.0190 REMARK 3 T13: -0.0174 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 0.0482 L22: 0.6326 REMARK 3 L33: 1.1489 L12: -0.0067 REMARK 3 L13: -0.1851 L23: -0.0343 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: 0.0167 S13: -0.0565 REMARK 3 S21: 0.0064 S22: -0.1746 S23: 0.1615 REMARK 3 S31: -0.0533 S32: -0.3868 S33: 0.1017 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 307:377) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2423 -18.3533 -4.4323 REMARK 3 T TENSOR REMARK 3 T11: 0.0070 T22: -0.0797 REMARK 3 T33: -0.0199 T12: -0.0015 REMARK 3 T13: -0.0353 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.4268 L22: 0.3046 REMARK 3 L33: 0.9759 L12: 0.1263 REMARK 3 L13: -0.1893 L23: -0.5786 REMARK 3 S TENSOR REMARK 3 S11: 0.0384 S12: -0.2901 S13: -0.2016 REMARK 3 S21: 0.3296 S22: -0.1781 S23: -0.0002 REMARK 3 S31: 0.4280 S32: -0.0988 S33: 0.0778 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 4:110) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5628 16.1179 -7.9777 REMARK 3 T TENSOR REMARK 3 T11: 0.0840 T22: 0.0470 REMARK 3 T33: 0.0729 T12: 0.0085 REMARK 3 T13: 0.0017 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.5362 L22: -0.0433 REMARK 3 L33: 0.4657 L12: 0.2282 REMARK 3 L13: -0.1081 L23: -0.0787 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: -0.0421 S13: 0.0859 REMARK 3 S21: 0.0385 S22: 0.0300 S23: 0.0035 REMARK 3 S31: -0.0634 S32: -0.0111 S33: 0.0027 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 111:241) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5607 -9.9440 -15.3479 REMARK 3 T TENSOR REMARK 3 T11: 0.0592 T22: 0.0482 REMARK 3 T33: 0.0882 T12: 0.0321 REMARK 3 T13: 0.0076 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.7155 L22: 0.5019 REMARK 3 L33: 0.5150 L12: 0.3257 REMARK 3 L13: -0.0472 L23: -0.3997 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: -0.0640 S13: -0.1767 REMARK 3 S21: 0.0113 S22: 0.0131 S23: -0.1018 REMARK 3 S31: 0.0596 S32: 0.0473 S33: 0.0518 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 242:301) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0176 20.9165 -9.1129 REMARK 3 T TENSOR REMARK 3 T11: 0.0202 T22: 0.0496 REMARK 3 T33: 0.0297 T12: -0.0227 REMARK 3 T13: -0.0008 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.1566 L22: 0.3974 REMARK 3 L33: 0.0827 L12: 0.2563 REMARK 3 L13: 0.0315 L23: 0.0296 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: 0.0204 S13: 0.0321 REMARK 3 S21: -0.0044 S22: 0.0027 S23: -0.0297 REMARK 3 S31: -0.0032 S32: 0.0272 S33: -0.0106 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 302:379) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7357 14.0958 -20.1960 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: 0.0521 REMARK 3 T33: 0.0159 T12: -0.0008 REMARK 3 T13: -0.0054 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 0.6632 L22: 0.4507 REMARK 3 L33: 0.2516 L12: -0.2641 REMARK 3 L13: -0.2187 L23: 0.2055 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.1182 S13: 0.0144 REMARK 3 S21: -0.0170 S22: -0.0245 S23: -0.0443 REMARK 3 S31: -0.0341 S32: 0.0056 S33: 0.0204 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000053544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95294 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79848 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 68.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58100 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM AMMONIUM PHOSPHATRE, 20% REMARK 280 PEG3350, PH4.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.22600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.73300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.84750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.73300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.22600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.84750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 164 REMARK 465 ASP A 165 REMARK 465 LYS A 166 REMARK 465 LYS A 167 REMARK 465 ASP A 168 REMARK 465 GLU A 169 REMARK 465 THR A 170 REMARK 465 TYR A 171 REMARK 465 ARG A 172 REMARK 465 SER A 173 REMARK 465 LEU A 174 REMARK 465 PHE A 175 REMARK 465 GLN A 176 REMARK 465 ASP A 177 REMARK 465 LEU A 178 REMARK 465 GLU A 179 REMARK 465 LEU A 180 REMARK 465 LYS A 181 REMARK 465 LYS A 182 REMARK 465 GLU A 183 REMARK 465 LEU A 378 REMARK 465 THR A 379 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 305 CG OD1 ND2 REMARK 470 GLN B 296 CG CD OE1 NE2 REMARK 470 ARG B 297 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 298 CG1 CG2 CD1 REMARK 470 GLU B 299 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 65 O HOH A 598 2.13 REMARK 500 ND2 ASN A 235 C1 NAG A 383 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 310 49.95 -98.16 REMARK 500 LYS A 373 -134.59 57.69 REMARK 500 ALA B 16 50.25 -97.84 REMARK 500 LYS B 151 60.85 60.14 REMARK 500 ILE B 298 108.31 -51.91 REMARK 500 ARG B 303 140.83 -39.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 383 DBREF 3HSY A 4 379 UNP P19491 GRIA2_RAT 25 400 DBREF 3HSY B 4 379 UNP P19491 GRIA2_RAT 25 400 SEQRES 1 A 376 ASN SER ILE GLN ILE GLY GLY LEU PHE PRO ARG GLY ALA SEQRES 2 A 376 ASP GLN GLU TYR SER ALA PHE ARG VAL GLY MET VAL GLN SEQRES 3 A 376 PHE SER THR SER GLU PHE ARG LEU THR PRO HIS ILE ASP SEQRES 4 A 376 ASN LEU GLU VAL ALA ASN SER PHE ALA VAL THR ASN ALA SEQRES 5 A 376 PHE CYS SER GLN PHE SER ARG GLY VAL TYR ALA ILE PHE SEQRES 6 A 376 GLY PHE TYR ASP LYS LYS SER VAL ASN THR ILE THR SER SEQRES 7 A 376 PHE CYS GLY THR LEU HIS VAL SER PHE ILE THR PRO SER SEQRES 8 A 376 PHE PRO THR ASP GLY THR HIS PRO PHE VAL ILE GLN MET SEQRES 9 A 376 ARG PRO ASP LEU LYS GLY ALA LEU LEU SER LEU ILE GLU SEQRES 10 A 376 TYR TYR GLN TRP ASP LYS PHE ALA TYR LEU TYR ASP SER SEQRES 11 A 376 ASP ARG GLY LEU SER THR LEU GLN ALA VAL LEU ASP SER SEQRES 12 A 376 ALA ALA GLU LYS LYS TRP GLN VAL THR ALA ILE ASN VAL SEQRES 13 A 376 GLY ASN ILE ASN ASN ASP LYS LYS ASP GLU THR TYR ARG SEQRES 14 A 376 SER LEU PHE GLN ASP LEU GLU LEU LYS LYS GLU ARG ARG SEQRES 15 A 376 VAL ILE LEU ASP CYS GLU ARG ASP LYS VAL ASN ASP ILE SEQRES 16 A 376 VAL ASP GLN VAL ILE THR ILE GLY LYS HIS VAL LYS GLY SEQRES 17 A 376 TYR HIS TYR ILE ILE ALA ASN LEU GLY PHE THR ASP GLY SEQRES 18 A 376 ASP LEU LEU LYS ILE GLN PHE GLY GLY ALA ASN VAL SER SEQRES 19 A 376 GLY PHE GLN ILE VAL ASP TYR ASP ASP SER LEU VAL SER SEQRES 20 A 376 LYS PHE ILE GLU ARG TRP SER THR LEU GLU GLU LYS GLU SEQRES 21 A 376 TYR PRO GLY ALA HIS THR ALA THR ILE LYS TYR THR SER SEQRES 22 A 376 ALA LEU THR TYR ASP ALA VAL GLN VAL MET THR GLU ALA SEQRES 23 A 376 PHE ARG ASN LEU ARG LYS GLN ARG ILE GLU ILE SER ARG SEQRES 24 A 376 ARG GLY ASN ALA GLY ASP CYS LEU ALA ASN PRO ALA VAL SEQRES 25 A 376 PRO TRP GLY GLN GLY VAL GLU ILE GLU ARG ALA LEU LYS SEQRES 26 A 376 GLN VAL GLN VAL GLU GLY LEU SER GLY ASN ILE LYS PHE SEQRES 27 A 376 ASP GLN ASN GLY LYS ARG ILE ASN TYR THR ILE ASN ILE SEQRES 28 A 376 MET GLU LEU LYS THR ASN GLY PRO ARG LYS ILE GLY TYR SEQRES 29 A 376 TRP SER GLU VAL ASP LYS MET VAL VAL THR LEU THR SEQRES 1 B 376 ASN SER ILE GLN ILE GLY GLY LEU PHE PRO ARG GLY ALA SEQRES 2 B 376 ASP GLN GLU TYR SER ALA PHE ARG VAL GLY MET VAL GLN SEQRES 3 B 376 PHE SER THR SER GLU PHE ARG LEU THR PRO HIS ILE ASP SEQRES 4 B 376 ASN LEU GLU VAL ALA ASN SER PHE ALA VAL THR ASN ALA SEQRES 5 B 376 PHE CYS SER GLN PHE SER ARG GLY VAL TYR ALA ILE PHE SEQRES 6 B 376 GLY PHE TYR ASP LYS LYS SER VAL ASN THR ILE THR SER SEQRES 7 B 376 PHE CYS GLY THR LEU HIS VAL SER PHE ILE THR PRO SER SEQRES 8 B 376 PHE PRO THR ASP GLY THR HIS PRO PHE VAL ILE GLN MET SEQRES 9 B 376 ARG PRO ASP LEU LYS GLY ALA LEU LEU SER LEU ILE GLU SEQRES 10 B 376 TYR TYR GLN TRP ASP LYS PHE ALA TYR LEU TYR ASP SER SEQRES 11 B 376 ASP ARG GLY LEU SER THR LEU GLN ALA VAL LEU ASP SER SEQRES 12 B 376 ALA ALA GLU LYS LYS TRP GLN VAL THR ALA ILE ASN VAL SEQRES 13 B 376 GLY ASN ILE ASN ASN ASP LYS LYS ASP GLU THR TYR ARG SEQRES 14 B 376 SER LEU PHE GLN ASP LEU GLU LEU LYS LYS GLU ARG ARG SEQRES 15 B 376 VAL ILE LEU ASP CYS GLU ARG ASP LYS VAL ASN ASP ILE SEQRES 16 B 376 VAL ASP GLN VAL ILE THR ILE GLY LYS HIS VAL LYS GLY SEQRES 17 B 376 TYR HIS TYR ILE ILE ALA ASN LEU GLY PHE THR ASP GLY SEQRES 18 B 376 ASP LEU LEU LYS ILE GLN PHE GLY GLY ALA ASN VAL SER SEQRES 19 B 376 GLY PHE GLN ILE VAL ASP TYR ASP ASP SER LEU VAL SER SEQRES 20 B 376 LYS PHE ILE GLU ARG TRP SER THR LEU GLU GLU LYS GLU SEQRES 21 B 376 TYR PRO GLY ALA HIS THR ALA THR ILE LYS TYR THR SER SEQRES 22 B 376 ALA LEU THR TYR ASP ALA VAL GLN VAL MET THR GLU ALA SEQRES 23 B 376 PHE ARG ASN LEU ARG LYS GLN ARG ILE GLU ILE SER ARG SEQRES 24 B 376 ARG GLY ASN ALA GLY ASP CYS LEU ALA ASN PRO ALA VAL SEQRES 25 B 376 PRO TRP GLY GLN GLY VAL GLU ILE GLU ARG ALA LEU LYS SEQRES 26 B 376 GLN VAL GLN VAL GLU GLY LEU SER GLY ASN ILE LYS PHE SEQRES 27 B 376 ASP GLN ASN GLY LYS ARG ILE ASN TYR THR ILE ASN ILE SEQRES 28 B 376 MET GLU LEU LYS THR ASN GLY PRO ARG LYS ILE GLY TYR SEQRES 29 B 376 TRP SER GLU VAL ASP LYS MET VAL VAL THR LEU THR MODRES 3HSY ASN B 349 ASN GLYCOSYLATION SITE MODRES 3HSY ASN A 349 ASN GLYCOSYLATION SITE MODRES 3HSY ASN A 235 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG A 383 14 HET SO4 A 384 5 HET NAG B 380 14 HET SO4 B 381 5 HET SO4 B 383 5 HET SO4 B 382 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM SO4 SULFATE ION FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 5 SO4 4(O4 S 2-) FORMUL 10 HOH *636(H2 O) HELIX 1 1 ALA A 16 PHE A 30 1 15 HELIX 2 2 ASN A 48 ARG A 62 1 15 HELIX 3 3 SER A 75 HIS A 87 1 13 HELIX 4 4 LEU A 111 TYR A 122 1 12 HELIX 5 5 LEU A 137 LYS A 151 1 15 HELIX 6 6 GLU A 191 GLY A 206 1 16 HELIX 7 7 HIS A 208 GLY A 211 5 4 HELIX 8 8 ASP A 225 ILE A 229 5 5 HELIX 9 9 ASP A 246 SER A 257 1 12 HELIX 10 10 LYS A 273 GLN A 296 1 24 HELIX 11 11 TRP A 317 VAL A 330 1 14 HELIX 12 12 ALA B 16 SER B 31 1 16 HELIX 13 13 ASN B 48 GLY B 63 1 16 HELIX 14 14 SER B 75 HIS B 87 1 13 HELIX 15 15 LEU B 111 TYR B 122 1 12 HELIX 16 16 LEU B 137 LYS B 151 1 15 HELIX 17 17 GLY B 160 ILE B 162 5 3 HELIX 18 18 LYS B 166 GLU B 179 1 14 HELIX 19 19 GLU B 191 ASP B 193 5 3 HELIX 20 20 LYS B 194 GLY B 206 1 13 HELIX 21 21 HIS B 208 GLY B 211 5 4 HELIX 22 22 GLY B 220 GLY B 224 5 5 HELIX 23 23 ASP B 246 SER B 257 1 12 HELIX 24 24 LYS B 273 ARG B 291 1 19 HELIX 25 25 GLY B 307 ASN B 312 1 6 HELIX 26 26 PRO B 316 GLN B 329 1 14 SHEET 1 A 5 ARG A 36 LEU A 44 0 SHEET 2 A 5 SER A 5 PRO A 13 1 N ILE A 6 O ARG A 36 SHEET 3 A 5 ALA A 66 GLY A 69 1 O PHE A 68 N GLY A 9 SHEET 4 A 5 SER A 89 THR A 92 1 O SER A 89 N ILE A 67 SHEET 5 A 5 VAL A 104 GLN A 106 1 O ILE A 105 N PHE A 90 SHEET 1 B 8 GLN A 153 ASN A 158 0 SHEET 2 B 8 LYS A 126 TYR A 131 1 N TYR A 129 O THR A 155 SHEET 3 B 8 ARG A 185 ASP A 189 1 O ILE A 187 N LEU A 130 SHEET 4 B 8 HIS A 213 ILE A 216 1 O ILE A 215 N LEU A 188 SHEET 5 B 8 ASN A 235 GLN A 240 1 O SER A 237 N ILE A 216 SHEET 6 B 8 THR A 351 LYS A 358 -1 O ASN A 353 N GLN A 240 SHEET 7 B 8 GLY A 361 SER A 369 -1 O ILE A 365 N ILE A 354 SHEET 8 B 8 LYS A 373 VAL A 376 -1 O VAL A 375 N TYR A 367 SHEET 1 C 2 VAL A 332 GLY A 334 0 SHEET 2 C 2 GLY A 337 ILE A 339 -1 O GLY A 337 N GLY A 334 SHEET 1 D 5 ARG B 36 LEU B 44 0 SHEET 2 D 5 SER B 5 PRO B 13 1 N ILE B 6 O THR B 38 SHEET 3 D 5 ALA B 66 GLY B 69 1 O PHE B 68 N GLY B 9 SHEET 4 D 5 SER B 89 THR B 92 1 O SER B 89 N ILE B 67 SHEET 5 D 5 VAL B 104 GLN B 106 1 O ILE B 105 N PHE B 90 SHEET 1 E 8 GLN B 153 ASN B 158 0 SHEET 2 E 8 LYS B 126 TYR B 131 1 N TYR B 129 O THR B 155 SHEET 3 E 8 ARG B 185 LEU B 188 1 O ILE B 187 N LEU B 130 SHEET 4 E 8 HIS B 213 ILE B 216 1 O ILE B 215 N LEU B 188 SHEET 5 E 8 ASN B 235 GLN B 240 1 O SER B 237 N ILE B 216 SHEET 6 E 8 THR B 351 LYS B 358 -1 O ASN B 353 N GLN B 240 SHEET 7 E 8 GLY B 361 SER B 369 -1 O TRP B 368 N ILE B 352 SHEET 8 E 8 VAL B 375 THR B 377 -1 O VAL B 376 N TYR B 367 SHEET 1 F 2 VAL B 332 GLY B 334 0 SHEET 2 F 2 GLY B 337 ILE B 339 -1 O ILE B 339 N VAL B 332 SSBOND 1 CYS A 57 CYS A 309 1555 1555 2.05 SSBOND 2 CYS B 57 CYS B 309 1555 1555 2.03 LINK ND2 ASN A 235 O5 NAG A 383 1555 1555 1.87 LINK ND2 ASN A 349 C1 NAG C 1 1555 1555 1.60 LINK ND2 ASN B 349 C1 NAG B 380 1555 1555 1.57 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.48 CISPEP 1 ASN A 312 PRO A 313 0 2.26 CRYST1 82.452 93.695 101.466 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012128 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009856 0.00000