HEADER DNA BINDING PROTEIN 11-JUN-09 3HTJ TITLE CRYSTAL STRUCTURE OF MULTIDRUG BINDING PROTEIN EBRR COMPLEXED WITH TITLE 2 ETHIDIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: EBRA REPRESSOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES LIVIDANS; SOURCE 3 ORGANISM_TAXID: 1916; SOURCE 4 STRAIN: TK64; SOURCE 5 GENE: EBRR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TETR FAMILY, MULTIDRUG RESISTANCE, MULTIDRUG BINDING PROTEIN, DNA- KEYWDS 2 BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION, DNA BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.DONG,L.NI,M.SCHUMACHER,R.BRENNAN REVDAT 2 06-SEP-23 3HTJ 1 REMARK SEQADV REVDAT 1 14-JUL-10 3HTJ 0 JRNL AUTH J.DONG,L.NI,M.SCHUMACHER,R.BRENNAN JRNL TITL STRUCTURAL PLASTICITY IS KEY TO MULTIPLE LIGAND BINDING BY JRNL TITL 2 THE MULTIDRUG BINDING REGULATOR EBRR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.48000 REMARK 3 B22 (A**2) : 8.48000 REMARK 3 B33 (A**2) : -16.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.360 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE FLAT CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14305 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 74.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3HTA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M LITHIUM SULFATE, 0.1 M TRIS-HCL, REMARK 280 0.01 M NICKEL CHLORIDE, PH 9.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.69700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.84728 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.34267 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 51.69700 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 29.84728 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.34267 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 51.69700 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 29.84728 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.34267 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.69455 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 88.68533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 59.69455 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 88.68533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 59.69455 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 88.68533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 PRO A 178 REMARK 465 VAL A 179 REMARK 465 PRO A 180 REMARK 465 ALA A 181 REMARK 465 THR A 182 REMARK 465 ARG A 183 REMARK 465 ASP A 184 REMARK 465 GLY A 185 REMARK 465 ARG A 186 REMARK 465 GLY A 187 REMARK 465 PRO A 188 REMARK 465 GLY A 189 REMARK 465 SER A 190 REMARK 465 HIS A 191 REMARK 465 PRO A 192 REMARK 465 PRO A 193 REMARK 465 ALA A 194 REMARK 465 THR A 195 REMARK 465 ALA A 196 REMARK 465 GLY A 197 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ARG B 3 REMARK 465 ARG B 4 REMARK 465 HIS B 5 REMARK 465 ASP B 6 REMARK 465 PRO B 7 REMARK 465 PRO B 180 REMARK 465 ALA B 181 REMARK 465 THR B 182 REMARK 465 ARG B 183 REMARK 465 ASP B 184 REMARK 465 GLY B 185 REMARK 465 ARG B 186 REMARK 465 GLY B 187 REMARK 465 PRO B 188 REMARK 465 GLY B 189 REMARK 465 SER B 190 REMARK 465 HIS B 191 REMARK 465 PRO B 192 REMARK 465 PRO B 193 REMARK 465 ALA B 194 REMARK 465 THR B 195 REMARK 465 ALA B 196 REMARK 465 GLY B 197 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 5 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 8 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 160 OD1 ASP A 161 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 161 CB ASP A 161 CG -0.227 REMARK 500 ASP A 161 C ASP A 161 O -0.116 REMARK 500 ALA B 82 CA ALA B 82 CB -0.287 REMARK 500 ASP B 83 CB ASP B 83 CG -0.168 REMARK 500 ASP B 83 CG ASP B 83 OD2 -0.152 REMARK 500 ASP B 83 C ASP B 83 O -0.187 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 161 CB - CA - C ANGL. DEV. = -24.8 DEGREES REMARK 500 ALA B 82 CB - CA - C ANGL. DEV. = 10.3 DEGREES REMARK 500 ALA B 82 N - CA - C ANGL. DEV. = -21.8 DEGREES REMARK 500 ASP B 83 CB - CA - C ANGL. DEV. = 14.2 DEGREES REMARK 500 ASP B 83 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 ASP B 83 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 LEU B 84 N - CA - CB ANGL. DEV. = 12.9 DEGREES REMARK 500 LEU B 84 N - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 41 -82.12 -57.19 REMARK 500 LEU A 42 -47.52 166.94 REMARK 500 ALA A 73 4.08 -66.55 REMARK 500 ALA A 76 -18.84 -48.68 REMARK 500 PRO A 80 1.24 -62.32 REMARK 500 ASP A 99 69.58 38.62 REMARK 500 ARG A 100 77.38 -61.14 REMARK 500 THR A 138 -145.73 -157.57 REMARK 500 ASP A 161 19.27 34.60 REMARK 500 ARG A 175 -19.91 -45.69 REMARK 500 TYR B 47 -74.93 -59.96 REMARK 500 ARG B 69 -36.50 -39.40 REMARK 500 ALA B 76 -25.93 -39.19 REMARK 500 PRO B 80 -37.13 -32.97 REMARK 500 GLU B 81 -108.77 -111.30 REMARK 500 ALA B 82 -139.08 41.96 REMARK 500 ASP B 83 -153.53 -141.68 REMARK 500 LEU B 84 -56.34 -148.80 REMARK 500 ALA B 112 -6.86 -57.60 REMARK 500 TRP B 126 -84.83 -66.58 REMARK 500 ALA B 127 -7.49 -56.53 REMARK 500 GLU B 128 103.15 -47.89 REMARK 500 VAL B 130 -39.82 -155.27 REMARK 500 THR B 138 -139.29 -117.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 74 NE2 REMARK 620 2 GLU A 94 OE1 105.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 74 NE2 REMARK 620 2 GLU B 94 OE2 132.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ET A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ET B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HTA RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH IMIDAZOLE REMARK 900 RELATED ID: 3HTH RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH PROFLAVIN REMARK 900 RELATED ID: 3HTI RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH MALACHITE GREEN DBREF 3HTJ A 1 197 UNP Q79SH7 Q79SH7_STRLI 1 197 DBREF 3HTJ B 1 197 UNP Q79SH7 Q79SH7_STRLI 1 197 SEQADV 3HTJ MET A -19 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ GLY A -18 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ SER A -17 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ SER A -16 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS A -15 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS A -14 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS A -13 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS A -12 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS A -11 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS A -10 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ SER A -9 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ SER A -8 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ GLY A -7 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ LEU A -6 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ VAL A -5 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ PRO A -4 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ ARG A -3 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ GLY A -2 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ SER A -1 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS A 0 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ MET B -19 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ GLY B -18 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ SER B -17 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ SER B -16 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS B -15 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS B -14 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS B -13 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS B -12 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS B -11 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS B -10 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ SER B -9 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ SER B -8 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ GLY B -7 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ LEU B -6 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ VAL B -5 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ PRO B -4 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ ARG B -3 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ GLY B -2 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ SER B -1 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTJ HIS B 0 UNP Q79SH7 EXPRESSION TAG SEQRES 1 A 217 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 217 LEU VAL PRO ARG GLY SER HIS MET PRO ARG ARG HIS ASP SEQRES 3 A 217 PRO GLU ARG ARG GLN ARG ILE ILE ASP ALA ALA ILE ARG SEQRES 4 A 217 VAL VAL GLY GLN LYS GLY ILE ALA GLY LEU SER HIS ARG SEQRES 5 A 217 THR VAL ALA ALA GLU ALA ASP VAL PRO LEU GLY SER THR SEQRES 6 A 217 THR TYR HIS PHE ALA THR LEU ASP ASP LEU MET VAL ALA SEQRES 7 A 217 ALA LEU ARG GLN ALA ASN GLU GLY PHE ALA ARG VAL VAL SEQRES 8 A 217 ALA ALA HIS PRO ALA LEU SER ASP PRO GLU ALA ASP LEU SEQRES 9 A 217 SER GLY GLU LEU ALA ARG VAL LEU GLY GLU TRP LEU GLY SEQRES 10 A 217 GLY ASP ARG THR GLY VAL GLU LEU GLU TYR GLU LEU TYR SEQRES 11 A 217 LEU ALA ALA LEU ARG ARG PRO ALA LEU ARG PRO VAL ALA SEQRES 12 A 217 ALA GLU TRP ALA GLU GLY VAL GLY ALA LEU LEU ALA ALA SEQRES 13 A 217 ARG THR ASP PRO THR THR ALA ARG ALA LEU VAL ALA VAL SEQRES 14 A 217 LEU ASP GLY ILE CYS LEU GLN VAL LEU LEU THR ASP THR SEQRES 15 A 217 PRO TYR ASP GLU GLU TYR ALA ARG GLU VAL LEU THR ARG SEQRES 16 A 217 LEU ILE PRO VAL PRO ALA THR ARG ASP GLY ARG GLY PRO SEQRES 17 A 217 GLY SER HIS PRO PRO ALA THR ALA GLY SEQRES 1 B 217 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 217 LEU VAL PRO ARG GLY SER HIS MET PRO ARG ARG HIS ASP SEQRES 3 B 217 PRO GLU ARG ARG GLN ARG ILE ILE ASP ALA ALA ILE ARG SEQRES 4 B 217 VAL VAL GLY GLN LYS GLY ILE ALA GLY LEU SER HIS ARG SEQRES 5 B 217 THR VAL ALA ALA GLU ALA ASP VAL PRO LEU GLY SER THR SEQRES 6 B 217 THR TYR HIS PHE ALA THR LEU ASP ASP LEU MET VAL ALA SEQRES 7 B 217 ALA LEU ARG GLN ALA ASN GLU GLY PHE ALA ARG VAL VAL SEQRES 8 B 217 ALA ALA HIS PRO ALA LEU SER ASP PRO GLU ALA ASP LEU SEQRES 9 B 217 SER GLY GLU LEU ALA ARG VAL LEU GLY GLU TRP LEU GLY SEQRES 10 B 217 GLY ASP ARG THR GLY VAL GLU LEU GLU TYR GLU LEU TYR SEQRES 11 B 217 LEU ALA ALA LEU ARG ARG PRO ALA LEU ARG PRO VAL ALA SEQRES 12 B 217 ALA GLU TRP ALA GLU GLY VAL GLY ALA LEU LEU ALA ALA SEQRES 13 B 217 ARG THR ASP PRO THR THR ALA ARG ALA LEU VAL ALA VAL SEQRES 14 B 217 LEU ASP GLY ILE CYS LEU GLN VAL LEU LEU THR ASP THR SEQRES 15 B 217 PRO TYR ASP GLU GLU TYR ALA ARG GLU VAL LEU THR ARG SEQRES 16 B 217 LEU ILE PRO VAL PRO ALA THR ARG ASP GLY ARG GLY PRO SEQRES 17 B 217 GLY SER HIS PRO PRO ALA THR ALA GLY HET NI A 200 1 HET ET A 201 24 HET NI B 200 1 HET ET B 201 24 HETNAM NI NICKEL (II) ION HETNAM ET ETHIDIUM FORMUL 3 NI 2(NI 2+) FORMUL 4 ET 2(C21 H20 N3 1+) FORMUL 7 HOH *24(H2 O) HELIX 1 1 ASP A 6 GLY A 25 1 20 HELIX 2 2 SER A 30 ASP A 39 1 10 HELIX 3 3 LEU A 42 PHE A 49 1 8 HELIX 4 4 THR A 51 ASN A 64 1 14 HELIX 5 5 GLY A 66 ALA A 73 1 8 HELIX 6 6 HIS A 74 SER A 78 5 5 HELIX 7 7 ASP A 83 LEU A 96 1 14 HELIX 8 8 ARG A 100 ALA A 113 1 14 HELIX 9 9 LEU A 114 ARG A 120 5 7 HELIX 10 10 PRO A 121 GLU A 125 5 5 HELIX 11 11 VAL A 130 THR A 138 1 9 HELIX 12 12 ASP A 139 THR A 160 1 22 HELIX 13 13 ASP A 165 ILE A 177 1 13 HELIX 14 14 GLU B 8 GLY B 25 1 18 HELIX 15 15 ILE B 26 LEU B 29 5 4 HELIX 16 16 SER B 30 ALA B 38 1 9 HELIX 17 17 PRO B 41 PHE B 49 1 9 HELIX 18 18 THR B 51 HIS B 74 1 24 HELIX 19 19 PRO B 75 ASP B 79 5 5 HELIX 20 20 LEU B 84 LEU B 96 1 13 HELIX 21 21 ARG B 100 ALA B 112 1 13 HELIX 22 22 ALA B 113 ARG B 115 5 3 HELIX 23 23 ARG B 116 ALA B 118 5 3 HELIX 24 24 LEU B 119 ALA B 124 1 6 HELIX 25 25 VAL B 130 THR B 138 1 9 HELIX 26 26 THR B 141 ASP B 161 1 21 HELIX 27 27 ASP B 165 ILE B 177 1 13 LINK NE2 HIS A 74 NI A NI A 200 1555 1555 1.72 LINK OE1 GLU A 94 NI A NI A 200 1555 1555 2.49 LINK NE2 HIS B 74 NI B NI B 200 1555 1555 1.92 LINK OE2 GLU B 94 NI B NI B 200 1555 1555 2.49 SITE 1 AC1 5 HIS A 74 ARG A 90 GLU A 94 HIS B 74 SITE 2 AC1 5 GLU B 94 SITE 1 AC2 10 ASN A 64 PHE A 67 LEU A 88 LEU A 92 SITE 2 AC2 10 TRP A 95 GLU A 106 TYR A 107 TRP A 126 SITE 3 AC2 10 LEU A 150 ASP A 151 SITE 1 AC3 4 HIS A 74 GLU A 94 HIS B 74 GLU B 94 SITE 1 AC4 11 PHE B 67 LEU B 88 LEU B 92 TRP B 95 SITE 2 AC4 11 GLU B 106 TYR B 107 TRP B 126 ALA B 127 SITE 3 AC4 11 VAL B 147 LEU B 150 ASP B 151 CRYST1 103.394 103.394 133.028 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009672 0.005584 0.000000 0.00000 SCALE2 0.000000 0.011168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007517 0.00000