HEADER VIRAL PROTEIN 12-JUN-09 3HTP TITLE THE HEMAGGLUTININ STRUCTURE OF AN AVIAN H1N1 INFLUENZA A VIRUS IN TITLE 2 COMPLEX WITH LSTA CAVEAT 3HTP NAG C 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HA1 CHAIN, UNP RESIDUES 15-338; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMAGGLUTININ HA2 CHAIN; COMPND 7 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/WDK/JX/12416/2005(H1N1)); SOURCE 3 ORGANISM_COMMON: A/WDK/JX/12416/2005(H1N1); SOURCE 4 ORGANISM_TAXID: 666057; SOURCE 5 STRAIN: WDK/JX/12416/2005; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/WDK/JX/12416/2005(H1N1)); SOURCE 8 ORGANISM_COMMON: A/WDK/JX/12416/2005(H1N1); SOURCE 9 ORGANISM_TAXID: 666057; SOURCE 10 STRAIN: WDK/JX/12416/2005 KEYWDS RECEPTOR, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.WANG,A.LI,Q.ZHANG,C.WU,R.ZHANG,Q.CAI,W.SONG,K.-Y.YUEN REVDAT 8 16-OCT-24 3HTP 1 REMARK REVDAT 7 01-NOV-23 3HTP 1 HETSYN REVDAT 6 29-JUL-20 3HTP 1 CAVEAT COMPND REMARK HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 26-FEB-14 3HTP 1 REMARK REVDAT 4 13-JUL-11 3HTP 1 VERSN REVDAT 3 20-OCT-09 3HTP 1 COMPND DBREF SOURCE REMARK REVDAT 2 08-SEP-09 3HTP 1 JRNL REVDAT 1 11-AUG-09 3HTP 0 JRNL AUTH T.LIN,G.WANG,A.LI,Q.ZHANG,C.WU,R.ZHANG,Q.CAI,W.SONG, JRNL AUTH 2 K.-Y.YUEN JRNL TITL THE HEMAGGLUTININ STRUCTURE OF AN AVIAN H1N1 INFLUENZA A JRNL TITL 2 VIRUS JRNL REF VIROLOGY V. 392 73 2009 JRNL REFN ISSN 0042-6822 JRNL PMID 19628241 JRNL DOI 10.1016/J.VIROL.2009.06.028 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2637 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 474 REMARK 3 BIN R VALUE (WORKING SET) : 0.4290 REMARK 3 BIN FREE R VALUE : 0.4282 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 47 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3816 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.304 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : BENT GE(111) MONOCHROMATOR REMARK 200 OPTICS : BENT CONICAL SI-MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27390 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.960 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.25300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1RU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH6.8, 40% PEG 400, 120MM REMARK 280 KSCN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 99.41050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 99.41050 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 99.41050 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 99.41050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 99.41050 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 99.41050 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 99.41050 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 99.41050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 99.41050 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 99.41050 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 99.41050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 99.41050 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 99.41050 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 99.41050 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 99.41050 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 99.41050 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 99.41050 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 99.41050 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 99.41050 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 99.41050 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 99.41050 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 99.41050 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 99.41050 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 99.41050 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 99.41050 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 99.41050 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 99.41050 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 99.41050 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 99.41050 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 99.41050 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 99.41050 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 99.41050 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 99.41050 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 99.41050 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 99.41050 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 99.41050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 35730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 175 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 62 O HOH B 62 5555 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 76.21 43.69 REMARK 500 ASN A 49 63.92 67.29 REMARK 500 ALA A 77 119.13 -12.08 REMARK 500 SER A 79 -94.35 79.68 REMARK 500 TRP A 80 144.61 50.61 REMARK 500 SER A 87 2.54 -69.16 REMARK 500 SER A 89 85.43 -63.68 REMARK 500 PHE A 115 107.69 -161.43 REMARK 500 SER A 125 -61.57 158.71 REMARK 500 CYS A 139 62.98 -108.03 REMARK 500 SER A 146 -153.25 -135.56 REMARK 500 THR A 155 -168.86 -118.87 REMARK 500 SER A 165 89.07 -161.31 REMARK 500 LYS A 174 161.64 177.48 REMARK 500 GLN A 196 -92.56 50.63 REMARK 500 ASN A 197 112.34 -35.13 REMARK 500 ASP A 199 33.91 -92.66 REMARK 500 LYS A 208 40.04 -162.98 REMARK 500 TYR A 209 139.38 -178.24 REMARK 500 ASN A 210 10.05 -155.52 REMARK 500 GLU A 216 79.14 -106.04 REMARK 500 ALA A 218 140.41 -174.59 REMARK 500 ARG A 224 28.00 35.82 REMARK 500 THR A 235 149.11 -173.29 REMARK 500 ASN A 261 81.11 -150.68 REMARK 500 SER A 264 -166.91 -122.81 REMARK 500 SER A 266 -122.80 -114.91 REMARK 500 ASN A 277 49.64 -81.50 REMARK 500 HIS A 299 135.10 -175.91 REMARK 500 PRO A 325 -136.25 -81.18 REMARK 500 SER A 326 90.11 80.29 REMARK 500 ALA B 507 23.11 48.56 REMARK 500 GLU B 569 96.49 70.46 REMARK 500 ASN B 572 -6.75 -46.36 REMARK 500 ARG B 627 -104.07 71.40 REMARK 500 ASN B 635 15.06 -142.68 REMARK 500 TYR B 659 108.58 -14.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HTO RELATED DB: PDB REMARK 900 HEMAGGLUTININ OF AVIAN H1N1 INFLUENZA A VIRUS REMARK 900 RELATED ID: 3HTQ RELATED DB: PDB REMARK 900 HEMAGGLUTININ OF AVIAN H1N1 INFLUENZA A VIRUS IN COMPLEX WITH LSTC REMARK 900 RELATED ID: 3HTT RELATED DB: PDB REMARK 900 HEMAGGLUTININ OF AVIAN H1N1 INFLUENZA A VIRUS IN COMPLEX WITH 2,3- REMARK 900 SIALYLLACTOSE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS NO UNP REFERENCE SEQUENCE DATABASE FOR CHAIN B AT THE TIME REMARK 999 OF PROCESSING. DBREF 3HTP A 5 327 UNP C7C6F1 C7C6F1_9INFA 15 338 DBREF 3HTP B 501 660 PDB 3HTP 3HTP 501 660 SEQRES 1 A 324 ASP THR ILE CYS ILE GLY TYR HIS ALA ASN ASN SER THR SEQRES 2 A 324 ASP THR VAL ASP THR VAL LEU GLU LYS ASN VAL THR VAL SEQRES 3 A 324 THR HIS SER VAL ASN LEU LEU GLU ASP ASN HIS ASN GLY SEQRES 4 A 324 LYS LEU CYS LYS LEU ASN GLY ILE ALA PRO LEU GLN LEU SEQRES 5 A 324 GLY LYS CYS ASN VAL ALA GLY TRP LEU LEU GLY ASN PRO SEQRES 6 A 324 GLU CYS ASP LEU LEU LEU THR ALA ASN SER TRP SER TYR SEQRES 7 A 324 ILE ILE GLU THR SER ASN SER GLU ASN GLY THR CYS TYR SEQRES 8 A 324 PRO GLY GLU PHE ILE ASP TYR GLU GLU LEU ARG GLU GLN SEQRES 9 A 324 LEU SER SER VAL SER SER PHE GLU ARG PHE GLU ILE PHE SEQRES 10 A 324 PRO LYS ALA SER SER TRP PRO ASN HIS GLU THR THR LYS SEQRES 11 A 324 GLY VAL THR ALA ALA CYS SER TYR PHE GLY ALA SER SER SEQRES 12 A 324 PHE TYR ARG ASN LEU LEU TRP ILE THR LYS LYS GLY THR SEQRES 13 A 324 SER TYR PRO LYS LEU SER LYS SER TYR THR ASN ASN LYS SEQRES 14 A 324 GLY LYS GLU VAL LEU VAL LEU TRP GLY VAL HIS HIS PRO SEQRES 15 A 324 PRO THR THR SER GLU GLN GLN THR LEU TYR GLN ASN THR SEQRES 16 A 324 ASP ALA TYR VAL SER VAL GLY SER SER LYS TYR ASN ARG SEQRES 17 A 324 ARG PHE THR PRO GLU ILE ALA ALA ARG PRO LYS VAL ARG SEQRES 18 A 324 GLY GLN ALA GLY ARG MET ASN TYR TYR TRP THR LEU LEU SEQRES 19 A 324 ASP GLN GLY ASP THR ILE THR PHE GLU ALA THR GLY ASN SEQRES 20 A 324 LEU ILE ALA PRO TRP TYR ALA PHE ALA LEU ASN LYS GLY SEQRES 21 A 324 SER ASP SER GLY ILE ILE THR SER ASP ALA PRO VAL HIS SEQRES 22 A 324 ASN CYS ASP THR LYS CYS GLN THR PRO HIS GLY ALA ILE SEQRES 23 A 324 ASN SER THR LEU PRO PHE GLN ASN VAL HIS PRO ILE THR SEQRES 24 A 324 ILE GLY GLU CYS PRO LYS TYR VAL LYS SER THR LYS LEU SEQRES 25 A 324 ARG MET ALA THR GLY LEU ARG ASN ILE PRO SER ILE SEQRES 1 B 160 GLY LEU PHE GLY ALA MET ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 160 TRP THR GLY MET ILE ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 160 GLN ASN GLU GLN GLY SER GLY TYR ALA ALA ASP GLN LYS SEQRES 4 B 160 SER THR GLN ASN ALA ILE ASP GLY ILE THR ASN LYS VAL SEQRES 5 B 160 ASN SER ILE ILE GLU LYS MET ASN THR GLN PHE THR ALA SEQRES 6 B 160 VAL GLY LYS GLU PHE ASN ASN LEU GLU ARG ARG ILE GLU SEQRES 7 B 160 ASN LEU ASN LYS LYS VAL ASP ASP GLY PHE LEU ASP VAL SEQRES 8 B 160 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU LEU GLU ASN SEQRES 9 B 160 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL ARG ASN SEQRES 10 B 160 LEU TYR GLU LYS VAL LYS SER GLN LEU ARG ASN ASN ALA SEQRES 11 B 160 LYS GLU ILE GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 160 CYS ASP ASP GLU CYS MET GLU SER VAL LYS ASN GLY THR SEQRES 13 B 160 TYR ASP TYR PRO MODRES 3HTP ASN A 15 ASN GLYCOSYLATION SITE MODRES 3HTP ASN A 27 ASN GLYCOSYLATION SITE MODRES 3HTP ASN A 91 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NDG C 2 14 HET NAG D 1 15 HET GAL D 2 11 HET SIA D 3 20 HET NAG A 631 14 HET NAG A 632 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 NDG C8 H15 N O6 FORMUL 4 GAL C6 H12 O6 FORMUL 4 SIA C11 H19 N O9 FORMUL 7 HOH *211(H2 O) HELIX 1 1 ASN A 60 GLY A 67 1 8 HELIX 2 2 ASN A 68 THR A 76 5 9 HELIX 3 3 ASP A 101 LEU A 109 1 9 HELIX 4 4 SER A 189 GLN A 196 1 8 HELIX 5 5 ASP B 537 LYS B 558 1 22 HELIX 6 6 GLU B 574 ARG B 627 1 54 HELIX 7 7 ASP B 645 ASN B 654 1 10 SHEET 1 A 5 GLY B 531 ALA B 536 0 SHEET 2 A 5 TYR B 522 ASN B 528 -1 N TYR B 524 O ALA B 535 SHEET 3 A 5 THR A 6 TYR A 11 -1 N GLY A 10 O GLY B 523 SHEET 4 A 5 CYS B 637 PHE B 640 -1 O PHE B 638 N ILE A 7 SHEET 5 A 5 ALA B 630 ILE B 633 -1 N LYS B 631 O GLU B 639 SHEET 1 B 2 THR A 19 VAL A 20 0 SHEET 2 B 2 VAL A 28 THR A 29 -1 O VAL A 28 N VAL A 20 SHEET 1 C 2 SER A 33 ASN A 35 0 SHEET 2 C 2 ARG A 316 ALA A 318 -1 O MET A 317 N VAL A 34 SHEET 1 D 3 LEU A 37 GLU A 38 0 SHEET 2 D 3 PHE A 295 GLN A 296 1 O PHE A 295 N GLU A 38 SHEET 3 D 3 LYS A 308 TYR A 309 1 O LYS A 308 N GLN A 296 SHEET 1 E 2 LEU A 45 LEU A 48 0 SHEET 2 E 2 VAL A 275 THR A 280 1 O CYS A 278 N LYS A 47 SHEET 1 F 3 LEU A 54 GLY A 57 0 SHEET 2 F 3 ILE A 83 GLU A 85 1 O ILE A 84 N LEU A 54 SHEET 3 F 3 ILE A 268 THR A 270 1 O ILE A 269 N ILE A 83 SHEET 1 G 2 SER A 114 PHE A 118 0 SHEET 2 G 2 ALA A 257 ASN A 261 -1 O ALA A 259 N GLU A 116 SHEET 1 H 2 THR A 136 TYR A 141 0 SHEET 2 H 2 ALA A 144 SER A 146 -1 O SER A 146 N THR A 136 SHEET 1 I 4 LEU A 151 TRP A 153 0 SHEET 2 I 4 LEU A 251 PRO A 254 -1 O ALA A 253 N LEU A 152 SHEET 3 I 4 VAL A 176 HIS A 184 -1 N GLY A 181 O ILE A 252 SHEET 4 I 4 ARG A 229 LEU A 237 -1 O ARG A 229 N HIS A 184 SHEET 1 J 4 LEU A 164 THR A 169 0 SHEET 2 J 4 THR A 242 ALA A 247 -1 O PHE A 245 N LYS A 166 SHEET 3 J 4 VAL A 202 GLY A 205 -1 N GLY A 205 O THR A 244 SHEET 4 J 4 ARG A 212 PHE A 213 -1 O PHE A 213 N VAL A 202 SHEET 1 K 4 ALA A 288 ILE A 289 0 SHEET 2 K 4 CYS A 282 GLN A 283 -1 N CYS A 282 O ILE A 289 SHEET 3 K 4 ILE A 303 GLY A 304 -1 O ILE A 303 N GLN A 283 SHEET 4 K 4 THR B 564 ALA B 565 -1 O THR B 564 N GLY A 304 SSBOND 1 CYS A 8 CYS B 637 1555 1555 2.04 SSBOND 2 CYS A 46 CYS A 278 1555 1555 2.04 SSBOND 3 CYS A 59 CYS A 71 1555 1555 2.03 SSBOND 4 CYS A 94 CYS A 139 1555 1555 2.04 SSBOND 5 CYS A 282 CYS A 306 1555 1555 2.04 SSBOND 6 CYS B 644 CYS B 648 1555 1555 2.03 LINK ND2 ASN A 15 C1 NAG A 631 1555 1555 1.46 LINK ND2 ASN A 27 C1 NAG A 632 1555 1555 1.46 LINK ND2 ASN A 91 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NDG C 2 1555 1555 1.39 LINK O3 NAG D 1 C1 GAL D 2 1555 1555 1.39 LINK O3 GAL D 2 C2 SIA D 3 1555 1555 1.40 CRYST1 198.821 198.821 198.821 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005030 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005030 0.00000