HEADER CELL CYCLE 13-JUN-09 3HUE TITLE STRUCTURE OF THE S. POMBE NBS1 FHA-BRCT1-BRCT2 DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR AND TELOMERE MAINTENANCE PROTEIN NBS1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL FHA-BRCT1-BRCT2 DOMAINS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: NBS1, SPBC6B1.09C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NBS1, FHA DOMAIN, BRCT DOMAIN, PHOSPHOPROTEIN BINDING, PHOSPHOSERINE KEYWDS 2 BINDING, DNA REPAIR., CHROMOSOMAL PROTEIN, DNA DAMAGE, DNA REPAIR, KEYWDS 3 NUCLEUS, PHOSPHOPROTEIN, TELOMERE, DNA BINDING PROTEIN, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR R.S.WILLIAMS,G.GUENTHER,J.A.TAINER REVDAT 2 13-JUL-11 3HUE 1 VERSN REVDAT 1 13-OCT-09 3HUE 0 JRNL AUTH R.S.WILLIAMS,G.E.DODSON,O.LIMBO,Y.YAMADA,J.S.WILLIAMS, JRNL AUTH 2 G.GUENTHER,S.CLASSEN,J.N.GLOVER,H.IWASAKI,P.RUSSELL, JRNL AUTH 3 J.A.TAINER JRNL TITL NBS1 FLEXIBLY TETHERS CTP1 AND MRE11-RAD50 TO COORDINATE DNA JRNL TITL 2 DOUBLE-STRAND BREAK PROCESSING AND REPAIR. JRNL REF CELL(CAMBRIDGE,MASS.) V. 139 87 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19804755 JRNL DOI 10.1016/J.CELL.2009.07.033 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 441 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 624 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 54.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : -2.22000 REMARK 3 B33 (A**2) : 2.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.437 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.355 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.486 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2470 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3330 ; 1.758 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 6.785 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;39.656 ;24.953 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 464 ;20.978 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.525 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1802 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1100 ; 0.131 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1637 ; 0.286 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 120 ; 0.174 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 74 ; 0.358 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.226 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1570 ; 0.844 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2472 ; 0.702 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1021 ; 1.227 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 858 ; 1.721 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0371 46.5179 -0.1547 REMARK 3 T TENSOR REMARK 3 T11: -0.1455 T22: -0.0052 REMARK 3 T33: -0.0720 T12: -0.0153 REMARK 3 T13: -0.0145 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.7470 L22: 4.9434 REMARK 3 L33: 0.8886 L12: -0.3623 REMARK 3 L13: -0.1899 L23: 0.3660 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: 0.0081 S13: -0.0410 REMARK 3 S21: 0.0267 S22: -0.0038 S23: 0.0682 REMARK 3 S31: 0.0735 S32: -0.0501 S33: 0.0114 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DATA COLLECTION INCLUDED THE REMARK 3 BIJVOETS PAIR REMARK 4 REMARK 4 3HUE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB053593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796, 0.9797 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16723 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.750 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2-1.4M POTASSIUM FORMATE, 100MM REMARK 280 SODIUM ACETATE PH 4.6, 5% W/V POLYETHYLENE GLYCOL 8000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.44850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.44850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.33550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 102.26900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.33550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 102.26900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.44850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.33550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 102.26900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.44850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.33550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 102.26900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 342 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 156 REMARK 465 ALA A 157 REMARK 465 ASN A 275 REMARK 465 ALA A 276 REMARK 465 VAL A 277 REMARK 465 TYR A 278 REMARK 465 ASP A 279 REMARK 465 SER A 280 REMARK 465 GLU A 281 REMARK 465 LYS A 282 REMARK 465 ILE A 283 REMARK 465 SER A 284 REMARK 465 PHE A 285 REMARK 465 PRO A 286 REMARK 465 ALA A 322 REMARK 465 SER A 323 REMARK 465 ASN A 324 REMARK 465 SER A 325 REMARK 465 THR A 326 REMARK 465 PRO A 327 REMARK 465 GLN A 328 REMARK 465 LYS A 329 REMARK 465 ILE A 330 REMARK 465 ALA A 331 REMARK 465 ALA A 332 REMARK 465 ALA A 333 REMARK 465 LEU A 334 REMARK 465 GLU A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 66.25 -109.57 REMARK 500 SER A 42 30.29 -93.17 REMARK 500 LEU A 73 64.02 -100.24 REMARK 500 GLU A 83 16.49 57.42 REMARK 500 ASN A 89 -4.10 67.55 REMARK 500 SER A 159 -139.93 -151.57 REMARK 500 ASP A 194 115.64 -167.19 REMARK 500 THR A 236 112.42 -27.69 REMARK 500 SER A 237 118.17 53.64 REMARK 500 MSE A 255 -43.68 -134.07 REMARK 500 ASN A 305 53.64 -115.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 121 ASN A 122 -148.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HUF RELATED DB: PDB DBREF 3HUE A 1 330 UNP O43070 NBS1_SCHPO 1 330 SEQADV 3HUE ALA A 331 UNP O43070 EXPRESSION TAG SEQADV 3HUE ALA A 332 UNP O43070 EXPRESSION TAG SEQADV 3HUE ALA A 333 UNP O43070 EXPRESSION TAG SEQADV 3HUE LEU A 334 UNP O43070 EXPRESSION TAG SEQADV 3HUE GLU A 335 UNP O43070 EXPRESSION TAG SEQADV 3HUE HIS A 336 UNP O43070 EXPRESSION TAG SEQADV 3HUE HIS A 337 UNP O43070 EXPRESSION TAG SEQADV 3HUE HIS A 338 UNP O43070 EXPRESSION TAG SEQADV 3HUE HIS A 339 UNP O43070 EXPRESSION TAG SEQADV 3HUE HIS A 340 UNP O43070 EXPRESSION TAG SEQADV 3HUE HIS A 341 UNP O43070 EXPRESSION TAG SEQRES 1 A 341 MSE TRP ILE ILE GLU ALA GLU GLY ASP ILE LEU LYS GLY SEQRES 2 A 341 LYS SER ARG ILE LEU PHE PRO GLY THR TYR ILE VAL GLY SEQRES 3 A 341 ARG ASN VAL SER ASP ASP SER SER HIS ILE GLN VAL ILE SEQRES 4 A 341 SER LYS SER ILE SER LYS ARG HIS ALA ARG PHE THR ILE SEQRES 5 A 341 LEU THR PRO SER GLU LYS ASP TYR PHE THR GLY GLY PRO SEQRES 6 A 341 CYS GLU PHE GLU VAL LYS ASP LEU ASP THR LYS PHE GLY SEQRES 7 A 341 THR LYS VAL ASN GLU LYS VAL VAL GLY GLN ASN GLY ASP SEQRES 8 A 341 SER TYR LYS GLU LYS ASP LEU LYS ILE GLN LEU GLY LYS SEQRES 9 A 341 CYS PRO PHE THR ILE ASN ALA TYR TRP ARG SER MSE CYS SEQRES 10 A 341 ILE GLN PHE ASP ASN PRO GLU MSE LEU SER GLN TRP ALA SEQRES 11 A 341 SER ASN LEU ASN LEU LEU GLY ILE PRO THR GLY LEU ARG SEQRES 12 A 341 ASP SER ASP ALA THR THR HIS PHE VAL MSE ASN ARG GLN SEQRES 13 A 341 ALA GLY SER SER ILE THR VAL GLY THR MSE TYR ALA PHE SEQRES 14 A 341 LEU LYS LYS THR VAL ILE ILE ASP ASP SER TYR LEU GLN SEQRES 15 A 341 TYR LEU SER THR VAL LYS GLU SER VAL ILE GLU ASP ALA SEQRES 16 A 341 SER LEU MSE PRO ASP ALA LEU GLU CYS PHE LYS ASN ILE SEQRES 17 A 341 ILE LYS ASN ASN ASP GLN PHE PRO SER SER PRO GLU ASP SEQRES 18 A 341 CYS ILE ASN SER LEU GLU GLY PHE SER CYS ALA MSE LEU SEQRES 19 A 341 ASN THR SER SER GLU SER HIS HIS LEU LEU GLU LEU LEU SEQRES 20 A 341 GLY LEU ARG ILE SER THR PHE MSE SER LEU GLY ASP ILE SEQRES 21 A 341 ASP LYS GLU LEU ILE SER LYS THR ASP PHE VAL VAL LEU SEQRES 22 A 341 ASN ASN ALA VAL TYR ASP SER GLU LYS ILE SER PHE PRO SEQRES 23 A 341 GLU GLY ILE PHE CYS LEU THR ILE GLU GLN LEU TRP LYS SEQRES 24 A 341 ILE ILE ILE GLU ARG ASN SER ARG GLU LEU ILE SER LYS SEQRES 25 A 341 GLU ILE GLU ARG LEU LYS TYR ALA THR ALA SER ASN SER SEQRES 26 A 341 THR PRO GLN LYS ILE ALA ALA ALA LEU GLU HIS HIS HIS SEQRES 27 A 341 HIS HIS HIS MODRES 3HUE MSE A 1 MET SELENOMETHIONINE MODRES 3HUE MSE A 116 MET SELENOMETHIONINE MODRES 3HUE MSE A 125 MET SELENOMETHIONINE MODRES 3HUE MSE A 153 MET SELENOMETHIONINE MODRES 3HUE MSE A 166 MET SELENOMETHIONINE MODRES 3HUE MSE A 198 MET SELENOMETHIONINE MODRES 3HUE MSE A 233 MET SELENOMETHIONINE MODRES 3HUE MSE A 255 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 116 8 HET MSE A 125 8 HET MSE A 153 8 HET MSE A 166 8 HET MSE A 198 8 HET MSE A 233 8 HET MSE A 255 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 HOH *68(H2 O) HELIX 1 1 LYS A 58 GLY A 63 1 6 HELIX 2 2 ASN A 122 LEU A 136 1 15 HELIX 3 3 THR A 162 LYS A 171 1 10 HELIX 4 4 ASP A 177 ASP A 194 1 18 HELIX 5 5 ALA A 195 MSE A 198 5 4 HELIX 6 6 ASP A 200 LYS A 210 1 11 HELIX 7 7 PRO A 219 ILE A 223 5 5 HELIX 8 8 SER A 237 LEU A 247 1 11 HELIX 9 9 SER A 256 ILE A 260 5 5 HELIX 10 10 ASP A 261 THR A 268 1 8 HELIX 11 11 ILE A 294 GLU A 303 1 10 HELIX 12 12 ASN A 305 THR A 321 1 17 SHEET 1 A 6 ARG A 16 LEU A 18 0 SHEET 2 A 6 TRP A 2 ALA A 6 -1 N ILE A 4 O ARG A 16 SHEET 3 A 6 ILE A 109 TRP A 113 -1 O TYR A 112 N ILE A 3 SHEET 4 A 6 ASP A 97 LEU A 102 -1 N ILE A 100 O ILE A 109 SHEET 5 A 6 THR A 79 VAL A 81 -1 N LYS A 80 O GLN A 101 SHEET 6 A 6 LYS A 84 VAL A 85 -1 O LYS A 84 N VAL A 81 SHEET 1 B 5 HIS A 35 GLN A 37 0 SHEET 2 B 5 GLY A 21 GLY A 26 1 N ILE A 24 O ILE A 36 SHEET 3 B 5 ALA A 48 ILE A 52 -1 O ALA A 48 N VAL A 25 SHEET 4 B 5 PHE A 68 ASP A 72 -1 O GLU A 69 N THR A 51 SHEET 5 B 5 ASP A 91 TYR A 93 -1 O ASP A 91 N VAL A 70 SHEET 1 C 4 THR A 140 GLY A 141 0 SHEET 2 C 4 ILE A 118 PHE A 120 1 N PHE A 120 O GLY A 141 SHEET 3 C 4 HIS A 150 VAL A 152 1 O VAL A 152 N GLN A 119 SHEET 4 C 4 VAL A 174 ILE A 176 1 O ILE A 176 N PHE A 151 SHEET 1 D 4 ARG A 250 THR A 253 0 SHEET 2 D 4 SER A 230 MSE A 233 1 N CYS A 231 O SER A 252 SHEET 3 D 4 PHE A 270 LEU A 273 1 O VAL A 272 N ALA A 232 SHEET 4 D 4 CYS A 291 THR A 293 1 O LEU A 292 N LEU A 273 LINK C MSE A 1 N TRP A 2 1555 1555 1.33 LINK C SER A 115 N MSE A 116 1555 1555 1.33 LINK C MSE A 116 N CYS A 117 1555 1555 1.33 LINK C GLU A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N LEU A 126 1555 1555 1.34 LINK C VAL A 152 N MSE A 153 1555 1555 1.34 LINK C MSE A 153 N ASN A 154 1555 1555 1.33 LINK C THR A 165 N MSE A 166 1555 1555 1.34 LINK C MSE A 166 N TYR A 167 1555 1555 1.34 LINK C LEU A 197 N MSE A 198 1555 1555 1.34 LINK C MSE A 198 N PRO A 199 1555 1555 1.35 LINK C ALA A 232 N MSE A 233 1555 1555 1.32 LINK C MSE A 233 N LEU A 234 1555 1555 1.33 LINK C PHE A 254 N MSE A 255 1555 1555 1.34 LINK C MSE A 255 N SER A 256 1555 1555 1.33 CRYST1 54.671 204.538 62.897 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018291 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015899 0.00000 HETATM 1 N MSE A 1 44.966 57.056 -0.475 1.00 36.82 N HETATM 2 CA MSE A 1 44.511 58.267 0.270 1.00 36.87 C HETATM 3 C MSE A 1 45.408 59.474 0.075 1.00 36.04 C HETATM 4 O MSE A 1 46.644 59.348 0.022 1.00 36.05 O HETATM 5 CB MSE A 1 44.332 58.007 1.757 1.00 37.24 C HETATM 6 CG MSE A 1 45.226 56.969 2.378 1.00 40.38 C HETATM 7 SE MSE A 1 44.358 56.373 4.022 1.00 49.08 SE HETATM 8 CE MSE A 1 42.643 56.365 3.379 1.00 46.37 C