HEADER ISOMERASE 15-JUN-09 3HUR TITLE CRYSTAL STRUCTURE OF ALANINE RACEMASE FROM OENOCOCCUS OENI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE RACEMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OENOCOCCUS OENI PSU-1; SOURCE 3 ORGANISM_TAXID: 203123; SOURCE 4 STRAIN: BAA-331; SOURCE 5 GENE: OEOE_1641; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, ISOMERASE, PYRIDOXAL PHOSPHATE, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.RUTTER,K.T.BAIN,S.HU,R.ROMERO,J.M.SAUDER,S.K.BURLEY, AUTHOR 2 S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (NYSGXRC) REVDAT 5 21-FEB-24 3HUR 1 REMARK REVDAT 4 10-FEB-21 3HUR 1 AUTHOR JRNL REMARK REVDAT 3 21-NOV-18 3HUR 1 AUTHOR REVDAT 2 01-NOV-17 3HUR 1 REMARK REVDAT 1 14-JUL-09 3HUR 0 JRNL AUTH J.B.BONANNO,M.RUTTER,K.T.BAIN,S.HU,R.ROMERO,J.M.SAUDER, JRNL AUTH 2 S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF ALANINE RACEMASE FROM OENOCOCCUS OENI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1277 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1740 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2966 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.47000 REMARK 3 B22 (A**2) : 1.90000 REMARK 3 B33 (A**2) : 0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.277 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.324 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3042 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1988 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4145 ; 1.618 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4859 ; 0.957 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 383 ; 6.647 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;36.926 ;24.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 493 ;17.603 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;26.778 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 475 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3389 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 604 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1911 ; 0.917 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 775 ; 0.148 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3074 ; 1.750 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 2.506 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1071 ; 4.165 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25510 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 26.762 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36500 REMARK 200 R SYM FOR SHELL (I) : 0.36500 REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CITRIC ACID PH 3.5, 2.0M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.27450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 94.72050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.27450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.72050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.27450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.72050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.27450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.72050 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.24950 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 94.72050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 59.24950 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 94.72050 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 59.24950 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 94.72050 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 59.24950 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 94.72050 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 59.24950 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.27450 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 59.24950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 65.27450 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 59.24950 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 65.27450 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 59.24950 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 65.27450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: POSSIBLE TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -253.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 118.49900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 118.49900 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 GLY A 386 REMARK 465 GLU A 387 REMARK 465 GLY A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 ASP A 265 CG OD1 OD2 REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 ARG A 275 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 ASP A 279 CG OD1 OD2 REMARK 470 ARG A 314 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 384 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 223 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 223 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 89 28.69 -161.67 REMARK 500 ASP A 129 93.80 -68.62 REMARK 500 MET A 132 45.01 -89.49 REMARK 500 ASN A 204 -169.86 -78.80 REMARK 500 ASN A 235 64.46 37.00 REMARK 500 HIS A 245 73.04 -115.33 REMARK 500 LYS A 264 -37.66 -19.38 REMARK 500 ASP A 318 19.07 -143.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 397 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11082J RELATED DB: TARGETDB DBREF 3HUR A 3 386 UNP Q04DI1 Q04DI1_OENOB 3 386 SEQADV 3HUR MET A 0 UNP Q04DI1 EXPRESSION TAG SEQADV 3HUR SER A 1 UNP Q04DI1 EXPRESSION TAG SEQADV 3HUR LEU A 2 UNP Q04DI1 EXPRESSION TAG SEQADV 3HUR GLU A 387 UNP Q04DI1 EXPRESSION TAG SEQADV 3HUR GLY A 388 UNP Q04DI1 EXPRESSION TAG SEQADV 3HUR HIS A 389 UNP Q04DI1 EXPRESSION TAG SEQADV 3HUR HIS A 390 UNP Q04DI1 EXPRESSION TAG SEQADV 3HUR HIS A 391 UNP Q04DI1 EXPRESSION TAG SEQADV 3HUR HIS A 392 UNP Q04DI1 EXPRESSION TAG SEQADV 3HUR HIS A 393 UNP Q04DI1 EXPRESSION TAG SEQADV 3HUR HIS A 394 UNP Q04DI1 EXPRESSION TAG SEQRES 1 A 395 MET SER LEU THR ALA ILE HIS ARG PRO THR TRP VAL SER SEQRES 2 A 395 VAL ASP LEU ASP ALA ALA ALA HIS ASN LEU GLN GLU ILE SEQRES 3 A 395 ARG GLU TRP THR LYS ALA LYS LYS VAL TYR ALA VAL LEU SEQRES 4 A 395 LYS ALA ASP GLY TYR GLY LEU GLY ALA ILE PRO LEU ALA SEQRES 5 A 395 LYS ALA PHE GLN GLU THR ALA SER ALA ASP ALA LEU ILE SEQRES 6 A 395 VAL SER ASN LEU ASP GLU ALA LEU GLU LEU ARG GLN ALA SEQRES 7 A 395 ASP LEU THR LEU PRO ILE TRP VAL LEU GLY ALA TRP ASP SEQRES 8 A 395 TYR SER ASP LEU LYS LEU PHE ILE ASP HIS ASP ILE VAL SEQRES 9 A 395 ILE THR ILE PRO SER LEU ALA TRP LEU GLN ASN LEU PRO SEQRES 10 A 395 ASP PHE GLU GLY THR LEU LYS VAL SER LEU ALA ILE ASP SEQRES 11 A 395 THR GLY MET THR ARG ILE GLY PHE ASP LYS ALA ASP GLU SEQRES 12 A 395 ILE SER ALA ALA LYS LYS ILE ILE ASP LYS ASN PRO GLN SEQRES 13 A 395 LEU ASP LEU PHE SER VAL TYR THR HIS PHE ALA THR ALA SEQRES 14 A 395 ASP GLU ALA GLY GLU LYS SER LYS ALA TYR PHE GLU GLU SEQRES 15 A 395 GLN LEU ARG ARG TRP GLN GLU LEU THR ILE ASN GLN GLY SEQRES 16 A 395 PHE ASP PRO SER LEU PHE SER MET ALA ASN SER ALA THR SEQRES 17 A 395 CYS ILE TRP HIS HIS ASP ASP PRO ARG ILE SER PHE ALA SEQRES 18 A 395 ALA ILE ARG PRO GLY GLN LEU ILE SER GLY VAL ASN VAL SEQRES 19 A 395 SER ASN GLY GLU LEU LYS MET PRO PRO ASN LEU HIS LEU SEQRES 20 A 395 GLU ARG ILE PHE SER VAL CYS SER GLU ILE ALA ASP VAL SEQRES 21 A 395 ARG PHE VAL LYS LYS ASP GLN SER LEU SER TYR GLY ALA SEQRES 22 A 395 SER GLU ARG MET PRO GLU ASP GLY TYR VAL ALA THR LEU SEQRES 23 A 395 PRO PHE GLY TYR ASN ASP GLY TRP LEU ARG ARG MET GLN SEQRES 24 A 395 LYS SER SER VAL ILE ILE ASN GLY LYS ARG MET PRO ILE SEQRES 25 A 395 ILE GLY ARG ILE THR MET ASP GLN THR MET VAL LYS LEU SEQRES 26 A 395 ASP ARG LYS TYR PRO ILE GLY THR ARG VAL THR LEU ILE SEQRES 27 A 395 GLY LYS ASP GLY GLY GLU GLN ILE THR VAL GLU GLU VAL SEQRES 28 A 395 ALA ASN TYR SER HIS THR ILE VAL ASP GLU ILE GLN THR SEQRES 29 A 395 THR LEU ALA PRO ARG ILE LYS ARG ILE TYR THR GLY ASP SEQRES 30 A 395 LEU ALA GLU VAL ILE GLY ALA ASN TYR GLY GLU GLY HIS SEQRES 31 A 395 HIS HIS HIS HIS HIS HET SO4 A 395 5 HET SO4 A 396 5 HET SO4 A 397 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HOH *32(H2 O) HELIX 1 1 LEU A 15 LYS A 30 1 16 HELIX 2 2 LYS A 39 LEU A 45 1 7 HELIX 3 3 GLY A 46 THR A 57 1 12 HELIX 4 4 ASN A 67 ALA A 77 1 11 HELIX 5 5 ASP A 90 SER A 92 5 3 HELIX 6 6 ASP A 93 HIS A 100 1 8 HELIX 7 7 SER A 108 ASN A 114 1 7 HELIX 8 8 LYS A 139 ASN A 153 1 15 HELIX 9 9 GLY A 172 ILE A 191 1 20 HELIX 10 10 ASP A 196 SER A 198 5 3 HELIX 11 11 ASN A 204 HIS A 211 1 8 HELIX 12 12 GLY A 225 GLY A 230 5 6 HELIX 13 13 ASP A 291 ARG A 295 5 5 HELIX 14 14 GLY A 375 ILE A 381 1 7 SHEET 1 A 6 LYS A 307 PRO A 310 0 SHEET 2 A 6 MET A 297 ILE A 304 -1 N ILE A 304 O LYS A 307 SHEET 3 A 6 ARG A 333 GLY A 338 -1 O THR A 335 N ILE A 303 SHEET 4 A 6 PHE A 250 GLU A 255 -1 N SER A 254 O VAL A 334 SHEET 5 A 6 THR A 9 ASP A 14 -1 N TRP A 10 O CYS A 253 SHEET 6 A 6 ARG A 371 THR A 374 1 O ILE A 372 N VAL A 13 SHEET 1 B 8 PHE A 200 SER A 201 0 SHEET 2 B 8 LEU A 156 TYR A 162 1 N VAL A 161 O SER A 201 SHEET 3 B 8 LEU A 122 ALA A 127 1 N VAL A 124 O PHE A 159 SHEET 4 B 8 ILE A 102 ILE A 106 1 N ILE A 106 O SER A 125 SHEET 5 B 8 ILE A 83 VAL A 85 1 N ILE A 83 O VAL A 103 SHEET 6 B 8 ALA A 62 VAL A 65 1 N VAL A 65 O TRP A 84 SHEET 7 B 8 LYS A 33 VAL A 37 1 N ALA A 36 O ILE A 64 SHEET 8 B 8 ALA A 221 ILE A 222 1 O ILE A 222 N TYR A 35 SHEET 1 C 3 ASP A 258 VAL A 262 0 SHEET 2 C 3 GLY A 280 LEU A 285 -1 O THR A 284 N ASP A 258 SHEET 3 C 3 THR A 320 LYS A 323 -1 O THR A 320 N LEU A 285 SHEET 1 D 2 THR A 346 ASN A 352 0 SHEET 2 D 2 ILE A 357 THR A 363 -1 O VAL A 358 N ALA A 351 SITE 1 AC1 5 ASN A 204 SER A 205 GLY A 225 GLN A 226 SITE 2 AC1 5 HOH A 410 SITE 1 AC2 5 ASP A 291 GLY A 292 TRP A 293 PRO A 367 SITE 2 AC2 5 ARG A 368 SITE 1 AC3 6 ARG A 7 ALA A 40 ASP A 41 ASN A 67 SITE 2 AC3 6 GLU A 70 LYS A 370 CRYST1 118.499 130.549 189.441 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008439 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005279 0.00000