data_3HV9 # _entry.id 3HV9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HV9 pdb_00003hv9 10.2210/pdb3hv9/pdb RCSB RCSB053624 ? ? WWPDB D_1000053624 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3HV8 'FimX EAL domain c-di-GMP bound' unspecified PDB 3HVA 'FimX GGDEF domain' unspecified PDB 3HVB 'FimX dual-domain GGDEF-EAL module' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3HV9 _pdbx_database_status.recvd_initial_deposition_date 2009-06-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Navarro, M.V.A.S.' 1 'De, N.' 2 'Bae, N.' 3 'Sondermann, H.' 4 # _citation.id primary _citation.title 'Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX.' _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 1104 _citation.page_last 1116 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19679088 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.06.010 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Navarro, M.V.' 1 ? primary 'De, N.' 2 ? primary 'Bae, N.' 3 ? primary 'Wang, Q.' 4 ? primary 'Sondermann, H.' 5 ? # _cell.entry_id 3HV9 _cell.length_a 107.900 _cell.length_b 107.900 _cell.length_c 131.450 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HV9 _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein FimX' 29061.959 1 3.1.4.52 ? 'EAL domain: UNP residues 429-691' ? 2 non-polymer syn GLYCEROL 92.094 6 ? ? ? ? 3 water nat water 18.015 117 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSNPAEELAAAAQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKI DRWVILNSIKLLAEHRAKGHQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLA TLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAG ATYIQGYYLQGPSQAMDYDFSSGDE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSNPAEELAAAAQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKI DRWVILNSIKLLAEHRAKGHQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLA TLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAG ATYIQGYYLQGPSQAMDYDFSSGDE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASN n 1 4 PRO n 1 5 ALA n 1 6 GLU n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 ALA n 1 11 ALA n 1 12 ALA n 1 13 GLN n 1 14 ARG n 1 15 GLY n 1 16 ASP n 1 17 VAL n 1 18 ILE n 1 19 ALA n 1 20 ILE n 1 21 LEU n 1 22 GLN n 1 23 GLN n 1 24 ALA n 1 25 LEU n 1 26 GLU n 1 27 THR n 1 28 ASN n 1 29 SER n 1 30 PHE n 1 31 ARG n 1 32 LEU n 1 33 LEU n 1 34 PHE n 1 35 GLN n 1 36 PRO n 1 37 VAL n 1 38 ILE n 1 39 SER n 1 40 LEU n 1 41 ARG n 1 42 GLY n 1 43 ASP n 1 44 SER n 1 45 HIS n 1 46 GLU n 1 47 ASN n 1 48 TYR n 1 49 GLU n 1 50 VAL n 1 51 LEU n 1 52 LEU n 1 53 ARG n 1 54 LEU n 1 55 LEU n 1 56 ASN n 1 57 PRO n 1 58 GLN n 1 59 GLY n 1 60 GLN n 1 61 GLU n 1 62 VAL n 1 63 PRO n 1 64 PRO n 1 65 ALA n 1 66 GLU n 1 67 PHE n 1 68 LEU n 1 69 HIS n 1 70 ALA n 1 71 ALA n 1 72 LYS n 1 73 GLU n 1 74 ALA n 1 75 GLY n 1 76 LEU n 1 77 ALA n 1 78 GLU n 1 79 LYS n 1 80 ILE n 1 81 ASP n 1 82 ARG n 1 83 TRP n 1 84 VAL n 1 85 ILE n 1 86 LEU n 1 87 ASN n 1 88 SER n 1 89 ILE n 1 90 LYS n 1 91 LEU n 1 92 LEU n 1 93 ALA n 1 94 GLU n 1 95 HIS n 1 96 ARG n 1 97 ALA n 1 98 LYS n 1 99 GLY n 1 100 HIS n 1 101 GLN n 1 102 THR n 1 103 LYS n 1 104 LEU n 1 105 PHE n 1 106 VAL n 1 107 HIS n 1 108 LEU n 1 109 SER n 1 110 SER n 1 111 ALA n 1 112 SER n 1 113 LEU n 1 114 GLN n 1 115 ASP n 1 116 PRO n 1 117 GLY n 1 118 LEU n 1 119 LEU n 1 120 PRO n 1 121 TRP n 1 122 LEU n 1 123 GLY n 1 124 VAL n 1 125 ALA n 1 126 LEU n 1 127 LYS n 1 128 ALA n 1 129 ALA n 1 130 ARG n 1 131 LEU n 1 132 PRO n 1 133 PRO n 1 134 GLU n 1 135 SER n 1 136 LEU n 1 137 VAL n 1 138 PHE n 1 139 GLN n 1 140 ILE n 1 141 SER n 1 142 GLU n 1 143 ALA n 1 144 ASP n 1 145 ALA n 1 146 THR n 1 147 SER n 1 148 TYR n 1 149 LEU n 1 150 LYS n 1 151 GLN n 1 152 ALA n 1 153 LYS n 1 154 GLN n 1 155 LEU n 1 156 THR n 1 157 GLN n 1 158 GLY n 1 159 LEU n 1 160 ALA n 1 161 THR n 1 162 LEU n 1 163 HIS n 1 164 CYS n 1 165 GLN n 1 166 ALA n 1 167 ALA n 1 168 ILE n 1 169 SER n 1 170 GLN n 1 171 PHE n 1 172 GLY n 1 173 CYS n 1 174 SER n 1 175 LEU n 1 176 ASN n 1 177 PRO n 1 178 PHE n 1 179 ASN n 1 180 ALA n 1 181 LEU n 1 182 LYS n 1 183 HIS n 1 184 LEU n 1 185 THR n 1 186 VAL n 1 187 GLN n 1 188 PHE n 1 189 ILE n 1 190 LYS n 1 191 ILE n 1 192 ASP n 1 193 GLY n 1 194 SER n 1 195 PHE n 1 196 VAL n 1 197 GLN n 1 198 ASP n 1 199 LEU n 1 200 ASN n 1 201 GLN n 1 202 VAL n 1 203 GLU n 1 204 ASN n 1 205 GLN n 1 206 GLU n 1 207 ILE n 1 208 LEU n 1 209 LYS n 1 210 GLY n 1 211 LEU n 1 212 ILE n 1 213 ALA n 1 214 GLU n 1 215 LEU n 1 216 HIS n 1 217 GLU n 1 218 GLN n 1 219 GLN n 1 220 LYS n 1 221 LEU n 1 222 SER n 1 223 ILE n 1 224 VAL n 1 225 PRO n 1 226 PHE n 1 227 VAL n 1 228 GLU n 1 229 SER n 1 230 ALA n 1 231 SER n 1 232 VAL n 1 233 LEU n 1 234 ALA n 1 235 THR n 1 236 LEU n 1 237 TRP n 1 238 GLN n 1 239 ALA n 1 240 GLY n 1 241 ALA n 1 242 THR n 1 243 TYR n 1 244 ILE n 1 245 GLN n 1 246 GLY n 1 247 TYR n 1 248 TYR n 1 249 LEU n 1 250 GLN n 1 251 GLY n 1 252 PRO n 1 253 SER n 1 254 GLN n 1 255 ALA n 1 256 MET n 1 257 ASP n 1 258 TYR n 1 259 ASP n 1 260 PHE n 1 261 SER n 1 262 SER n 1 263 GLY n 1 264 ASP n 1 265 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'fimX, PA4959' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'PAO1 / 1C / PRS 101 / LMG 12228' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa PAO1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 208964 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 15692 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ppSUMO _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9HUK6_PSEAE _struct_ref.pdbx_db_accession Q9HUK6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NPAEELAAAAQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKIDR WVILNSIKLLAEHRAKGHQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATL HCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGAT YIQGYYLQGPSQAMDYDFSSGDE ; _struct_ref.pdbx_align_begin 429 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HV9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 265 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9HUK6 _struct_ref_seq.db_align_beg 429 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 691 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 429 _struct_ref_seq.pdbx_auth_seq_align_end 691 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3HV9 GLY A 1 ? UNP Q9HUK6 ? ? 'expression tag' 427 1 1 3HV9 SER A 2 ? UNP Q9HUK6 ? ? 'expression tag' 428 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3HV9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.82 _exptl_crystal.density_percent_sol 67.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.1 _exptl_crystal_grow.pdbx_details 'Ammonium sulfate, PEG 8000, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2008-10-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0809 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0809 # _reflns.entry_id 3HV9 _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 46.732 _reflns.d_resolution_high 2.298 _reflns.number_obs 20719 _reflns.number_all 20760 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 31.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.298 _reflns_shell.d_res_low 2.430 _reflns_shell.percent_possible_all 97.9 _reflns_shell.Rmerge_I_obs 0.494 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 6702 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3HV9 _refine.ls_number_reflns_obs 20712 _refine.ls_number_reflns_all 20719 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.99 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.722 _refine.ls_d_res_high 2.298 _refine.ls_percent_reflns_obs 99.83 _refine.ls_R_factor_obs 0.1973 _refine.ls_R_factor_all 0.2015 _refine.ls_R_factor_R_work 0.1952 _refine.ls_R_factor_R_free 0.2366 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.99 _refine.ls_number_reflns_R_free 1034 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.369 _refine.solvent_model_param_bsol 59.751 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB entry 3HVB' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.30 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2024 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 117 _refine_hist.number_atoms_total 2177 _refine_hist.d_res_high 2.298 _refine_hist.d_res_low 46.722 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? f_angle_d 1.106 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.2980 2.4191 2720 0.2336 99.00 0.3101 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.4191 2.5706 2772 0.2300 100.00 0.3086 . . 145 . . . . 'X-RAY DIFFRACTION' . 2.5706 2.7691 2745 0.2208 100.00 0.2769 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.7691 3.0477 2784 0.2080 100.00 0.2777 . . 147 . . . . 'X-RAY DIFFRACTION' . 3.0477 3.4886 2802 0.2015 100.00 0.2954 . . 147 . . . . 'X-RAY DIFFRACTION' . 3.4886 4.3947 2843 0.1652 100.00 0.1955 . . 150 . . . . 'X-RAY DIFFRACTION' . 4.3947 46.732 3012 0.1842 99.00 0.1847 . . 158 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3HV9 _struct.title 'Crystal structure of FimX EAL domain from Pseudomonas aeruginosa' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HV9 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'EAL phosphodiesterase, biofilm, c-di-GMP, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 3 ? ARG A 14 ? ASN A 429 ARG A 440 1 ? 12 HELX_P HELX_P2 2 ASP A 16 ? LEU A 25 ? ASP A 442 LEU A 451 1 ? 10 HELX_P HELX_P3 3 PRO A 63 ? ALA A 74 ? PRO A 489 ALA A 500 1 ? 12 HELX_P HELX_P4 4 LEU A 76 ? LYS A 98 ? LEU A 502 LYS A 524 1 ? 23 HELX_P HELX_P5 5 SER A 109 ? GLN A 114 ? SER A 535 GLN A 540 1 ? 6 HELX_P HELX_P6 6 GLY A 117 ? ALA A 129 ? GLY A 543 ALA A 555 1 ? 13 HELX_P HELX_P7 7 GLU A 142 ? TYR A 148 ? GLU A 568 TYR A 574 1 ? 7 HELX_P HELX_P8 8 TYR A 148 ? LEU A 162 ? TYR A 574 LEU A 588 1 ? 15 HELX_P HELX_P9 9 ASN A 176 ? LEU A 184 ? ASN A 602 LEU A 610 1 ? 9 HELX_P HELX_P10 10 GLY A 193 ? GLN A 197 ? GLY A 619 GLN A 623 5 ? 5 HELX_P HELX_P11 11 GLN A 201 ? GLN A 218 ? GLN A 627 GLN A 644 1 ? 18 HELX_P HELX_P12 12 SER A 229 ? GLY A 240 ? SER A 655 GLY A 666 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 30 ? SER A 39 ? PHE A 456 SER A 465 A 2 GLU A 46 ? LEU A 54 ? GLU A 472 LEU A 480 A 3 THR A 102 ? HIS A 107 ? THR A 528 HIS A 533 A 4 LEU A 136 ? SER A 141 ? LEU A 562 SER A 567 A 5 GLN A 165 ? PHE A 171 ? GLN A 591 PHE A 597 A 6 PHE A 188 ? ILE A 191 ? PHE A 614 ILE A 617 A 7 LEU A 221 ? VAL A 224 ? LEU A 647 VAL A 650 A 8 TYR A 243 ? ILE A 244 ? TYR A 669 ILE A 670 A 9 PHE A 30 ? SER A 39 ? PHE A 456 SER A 465 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 37 ? N VAL A 463 O ASN A 47 ? O ASN A 473 A 2 3 N VAL A 50 ? N VAL A 476 O PHE A 105 ? O PHE A 531 A 3 4 N VAL A 106 ? N VAL A 532 O GLN A 139 ? O GLN A 565 A 4 5 N ILE A 140 ? N ILE A 566 O ALA A 167 ? O ALA A 593 A 5 6 N ILE A 168 ? N ILE A 594 O LYS A 190 ? O LYS A 616 A 6 7 N ILE A 189 ? N ILE A 615 O LEU A 221 ? O LEU A 647 A 7 8 N VAL A 224 ? N VAL A 650 O TYR A 243 ? O TYR A 669 A 8 9 O ILE A 244 ? O ILE A 670 N ILE A 38 ? N ILE A 464 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 901 ? 6 'BINDING SITE FOR RESIDUE GOL A 901' AC2 Software A GOL 902 ? 6 'BINDING SITE FOR RESIDUE GOL A 902' AC3 Software A GOL 903 ? 6 'BINDING SITE FOR RESIDUE GOL A 903' AC4 Software A GOL 904 ? 7 'BINDING SITE FOR RESIDUE GOL A 904' AC5 Software A GOL 905 ? 7 'BINDING SITE FOR RESIDUE GOL A 905' AC6 Software A GOL 906 ? 4 'BINDING SITE FOR RESIDUE GOL A 906' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH H . ? HOH A 16 . ? 1_555 ? 2 AC1 6 HOH H . ? HOH A 116 . ? 1_555 ? 3 AC1 6 LEU A 52 ? LEU A 478 . ? 1_555 ? 4 AC1 6 ASP A 81 ? ASP A 507 . ? 1_555 ? 5 AC1 6 HIS A 107 ? HIS A 533 . ? 1_555 ? 6 AC1 6 SER A 109 ? SER A 535 . ? 1_555 ? 7 AC2 6 HOH H . ? HOH A 114 . ? 1_555 ? 8 AC2 6 HOH H . ? HOH A 115 . ? 1_555 ? 9 AC2 6 PRO A 225 ? PRO A 651 . ? 1_555 ? 10 AC2 6 PHE A 226 ? PHE A 652 . ? 1_555 ? 11 AC2 6 GLN A 245 ? GLN A 671 . ? 1_555 ? 12 AC2 6 GOL E . ? GOL A 904 . ? 1_555 ? 13 AC3 6 HIS A 107 ? HIS A 533 . ? 1_555 ? 14 AC3 6 LEU A 108 ? LEU A 534 . ? 1_555 ? 15 AC3 6 GLN A 139 ? GLN A 565 . ? 1_555 ? 16 AC3 6 SER A 169 ? SER A 595 . ? 1_555 ? 17 AC3 6 GLN A 170 ? GLN A 596 . ? 1_555 ? 18 AC3 6 GOL E . ? GOL A 904 . ? 1_555 ? 19 AC4 7 HOH H . ? HOH A 49 . ? 1_555 ? 20 AC4 7 HOH H . ? HOH A 94 . ? 1_555 ? 21 AC4 7 GLU A 49 ? GLU A 475 . ? 1_555 ? 22 AC4 7 GLN A 139 ? GLN A 565 . ? 1_555 ? 23 AC4 7 LYS A 190 ? LYS A 616 . ? 1_555 ? 24 AC4 7 GOL C . ? GOL A 902 . ? 1_555 ? 25 AC4 7 GOL D . ? GOL A 903 . ? 1_555 ? 26 AC5 7 HOH H . ? HOH A 6 . ? 12_554 ? 27 AC5 7 HOH H . ? HOH A 42 . ? 1_555 ? 28 AC5 7 GLY A 15 ? GLY A 441 . ? 12_554 ? 29 AC5 7 GLN A 60 ? GLN A 486 . ? 12_554 ? 30 AC5 7 TYR A 247 ? TYR A 673 . ? 1_555 ? 31 AC5 7 GLN A 250 ? GLN A 676 . ? 1_555 ? 32 AC5 7 GLY A 251 ? GLY A 677 . ? 1_555 ? 33 AC6 4 ASN A 28 ? ASN A 454 . ? 1_555 ? 34 AC6 4 PHE A 30 ? PHE A 456 . ? 1_555 ? 35 AC6 4 LEU A 32 ? LEU A 458 . ? 1_555 ? 36 AC6 4 LYS A 90 ? LYS A 516 . ? 11_655 ? # _database_PDB_matrix.entry_id 3HV9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3HV9 _atom_sites.fract_transf_matrix[1][1] 0.009268 _atom_sites.fract_transf_matrix[1][2] 0.005351 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010702 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007607 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 427 ? ? ? A . n A 1 2 SER 2 428 ? ? ? A . n A 1 3 ASN 3 429 429 ASN ASN A . n A 1 4 PRO 4 430 430 PRO PRO A . n A 1 5 ALA 5 431 431 ALA ALA A . n A 1 6 GLU 6 432 432 GLU GLU A . n A 1 7 GLU 7 433 433 GLU GLU A . n A 1 8 LEU 8 434 434 LEU LEU A . n A 1 9 ALA 9 435 435 ALA ALA A . n A 1 10 ALA 10 436 436 ALA ALA A . n A 1 11 ALA 11 437 437 ALA ALA A . n A 1 12 ALA 12 438 438 ALA ALA A . n A 1 13 GLN 13 439 439 GLN GLN A . n A 1 14 ARG 14 440 440 ARG ARG A . n A 1 15 GLY 15 441 441 GLY GLY A . n A 1 16 ASP 16 442 442 ASP ASP A . n A 1 17 VAL 17 443 443 VAL VAL A . n A 1 18 ILE 18 444 444 ILE ILE A . n A 1 19 ALA 19 445 445 ALA ALA A . n A 1 20 ILE 20 446 446 ILE ILE A . n A 1 21 LEU 21 447 447 LEU LEU A . n A 1 22 GLN 22 448 448 GLN GLN A . n A 1 23 GLN 23 449 449 GLN GLN A . n A 1 24 ALA 24 450 450 ALA ALA A . n A 1 25 LEU 25 451 451 LEU LEU A . n A 1 26 GLU 26 452 452 GLU GLU A . n A 1 27 THR 27 453 453 THR THR A . n A 1 28 ASN 28 454 454 ASN ASN A . n A 1 29 SER 29 455 455 SER SER A . n A 1 30 PHE 30 456 456 PHE PHE A . n A 1 31 ARG 31 457 457 ARG ARG A . n A 1 32 LEU 32 458 458 LEU LEU A . n A 1 33 LEU 33 459 459 LEU LEU A . n A 1 34 PHE 34 460 460 PHE PHE A . n A 1 35 GLN 35 461 461 GLN GLN A . n A 1 36 PRO 36 462 462 PRO PRO A . n A 1 37 VAL 37 463 463 VAL VAL A . n A 1 38 ILE 38 464 464 ILE ILE A . n A 1 39 SER 39 465 465 SER SER A . n A 1 40 LEU 40 466 466 LEU LEU A . n A 1 41 ARG 41 467 467 ARG ARG A . n A 1 42 GLY 42 468 468 GLY GLY A . n A 1 43 ASP 43 469 469 ASP ASP A . n A 1 44 SER 44 470 470 SER SER A . n A 1 45 HIS 45 471 471 HIS HIS A . n A 1 46 GLU 46 472 472 GLU GLU A . n A 1 47 ASN 47 473 473 ASN ASN A . n A 1 48 TYR 48 474 474 TYR TYR A . n A 1 49 GLU 49 475 475 GLU GLU A . n A 1 50 VAL 50 476 476 VAL VAL A . n A 1 51 LEU 51 477 477 LEU LEU A . n A 1 52 LEU 52 478 478 LEU LEU A . n A 1 53 ARG 53 479 479 ARG ARG A . n A 1 54 LEU 54 480 480 LEU LEU A . n A 1 55 LEU 55 481 481 LEU LEU A . n A 1 56 ASN 56 482 482 ASN ASN A . n A 1 57 PRO 57 483 483 PRO PRO A . n A 1 58 GLN 58 484 484 GLN GLN A . n A 1 59 GLY 59 485 485 GLY GLY A . n A 1 60 GLN 60 486 486 GLN GLN A . n A 1 61 GLU 61 487 487 GLU GLU A . n A 1 62 VAL 62 488 488 VAL VAL A . n A 1 63 PRO 63 489 489 PRO PRO A . n A 1 64 PRO 64 490 490 PRO PRO A . n A 1 65 ALA 65 491 491 ALA ALA A . n A 1 66 GLU 66 492 492 GLU GLU A . n A 1 67 PHE 67 493 493 PHE PHE A . n A 1 68 LEU 68 494 494 LEU LEU A . n A 1 69 HIS 69 495 495 HIS HIS A . n A 1 70 ALA 70 496 496 ALA ALA A . n A 1 71 ALA 71 497 497 ALA ALA A . n A 1 72 LYS 72 498 498 LYS LYS A . n A 1 73 GLU 73 499 499 GLU GLU A . n A 1 74 ALA 74 500 500 ALA ALA A . n A 1 75 GLY 75 501 501 GLY GLY A . n A 1 76 LEU 76 502 502 LEU LEU A . n A 1 77 ALA 77 503 503 ALA ALA A . n A 1 78 GLU 78 504 504 GLU GLU A . n A 1 79 LYS 79 505 505 LYS LYS A . n A 1 80 ILE 80 506 506 ILE ILE A . n A 1 81 ASP 81 507 507 ASP ASP A . n A 1 82 ARG 82 508 508 ARG ARG A . n A 1 83 TRP 83 509 509 TRP TRP A . n A 1 84 VAL 84 510 510 VAL VAL A . n A 1 85 ILE 85 511 511 ILE ILE A . n A 1 86 LEU 86 512 512 LEU LEU A . n A 1 87 ASN 87 513 513 ASN ASN A . n A 1 88 SER 88 514 514 SER SER A . n A 1 89 ILE 89 515 515 ILE ILE A . n A 1 90 LYS 90 516 516 LYS LYS A . n A 1 91 LEU 91 517 517 LEU LEU A . n A 1 92 LEU 92 518 518 LEU LEU A . n A 1 93 ALA 93 519 519 ALA ALA A . n A 1 94 GLU 94 520 520 GLU GLU A . n A 1 95 HIS 95 521 521 HIS HIS A . n A 1 96 ARG 96 522 522 ARG ARG A . n A 1 97 ALA 97 523 523 ALA ALA A . n A 1 98 LYS 98 524 524 LYS LYS A . n A 1 99 GLY 99 525 525 GLY GLY A . n A 1 100 HIS 100 526 526 HIS HIS A . n A 1 101 GLN 101 527 527 GLN GLN A . n A 1 102 THR 102 528 528 THR THR A . n A 1 103 LYS 103 529 529 LYS LYS A . n A 1 104 LEU 104 530 530 LEU LEU A . n A 1 105 PHE 105 531 531 PHE PHE A . n A 1 106 VAL 106 532 532 VAL VAL A . n A 1 107 HIS 107 533 533 HIS HIS A . n A 1 108 LEU 108 534 534 LEU LEU A . n A 1 109 SER 109 535 535 SER SER A . n A 1 110 SER 110 536 536 SER SER A . n A 1 111 ALA 111 537 537 ALA ALA A . n A 1 112 SER 112 538 538 SER SER A . n A 1 113 LEU 113 539 539 LEU LEU A . n A 1 114 GLN 114 540 540 GLN GLN A . n A 1 115 ASP 115 541 541 ASP ASP A . n A 1 116 PRO 116 542 542 PRO PRO A . n A 1 117 GLY 117 543 543 GLY GLY A . n A 1 118 LEU 118 544 544 LEU LEU A . n A 1 119 LEU 119 545 545 LEU LEU A . n A 1 120 PRO 120 546 546 PRO PRO A . n A 1 121 TRP 121 547 547 TRP TRP A . n A 1 122 LEU 122 548 548 LEU LEU A . n A 1 123 GLY 123 549 549 GLY GLY A . n A 1 124 VAL 124 550 550 VAL VAL A . n A 1 125 ALA 125 551 551 ALA ALA A . n A 1 126 LEU 126 552 552 LEU LEU A . n A 1 127 LYS 127 553 553 LYS LYS A . n A 1 128 ALA 128 554 554 ALA ALA A . n A 1 129 ALA 129 555 555 ALA ALA A . n A 1 130 ARG 130 556 556 ARG ARG A . n A 1 131 LEU 131 557 557 LEU LEU A . n A 1 132 PRO 132 558 558 PRO PRO A . n A 1 133 PRO 133 559 559 PRO PRO A . n A 1 134 GLU 134 560 560 GLU GLU A . n A 1 135 SER 135 561 561 SER SER A . n A 1 136 LEU 136 562 562 LEU LEU A . n A 1 137 VAL 137 563 563 VAL VAL A . n A 1 138 PHE 138 564 564 PHE PHE A . n A 1 139 GLN 139 565 565 GLN GLN A . n A 1 140 ILE 140 566 566 ILE ILE A . n A 1 141 SER 141 567 567 SER SER A . n A 1 142 GLU 142 568 568 GLU GLU A . n A 1 143 ALA 143 569 569 ALA ALA A . n A 1 144 ASP 144 570 570 ASP ASP A . n A 1 145 ALA 145 571 571 ALA ALA A . n A 1 146 THR 146 572 572 THR THR A . n A 1 147 SER 147 573 573 SER SER A . n A 1 148 TYR 148 574 574 TYR TYR A . n A 1 149 LEU 149 575 575 LEU LEU A . n A 1 150 LYS 150 576 576 LYS LYS A . n A 1 151 GLN 151 577 577 GLN GLN A . n A 1 152 ALA 152 578 578 ALA ALA A . n A 1 153 LYS 153 579 579 LYS LYS A . n A 1 154 GLN 154 580 580 GLN GLN A . n A 1 155 LEU 155 581 581 LEU LEU A . n A 1 156 THR 156 582 582 THR THR A . n A 1 157 GLN 157 583 583 GLN GLN A . n A 1 158 GLY 158 584 584 GLY GLY A . n A 1 159 LEU 159 585 585 LEU LEU A . n A 1 160 ALA 160 586 586 ALA ALA A . n A 1 161 THR 161 587 587 THR THR A . n A 1 162 LEU 162 588 588 LEU LEU A . n A 1 163 HIS 163 589 589 HIS HIS A . n A 1 164 CYS 164 590 590 CYS CYS A . n A 1 165 GLN 165 591 591 GLN GLN A . n A 1 166 ALA 166 592 592 ALA ALA A . n A 1 167 ALA 167 593 593 ALA ALA A . n A 1 168 ILE 168 594 594 ILE ILE A . n A 1 169 SER 169 595 595 SER SER A . n A 1 170 GLN 170 596 596 GLN GLN A . n A 1 171 PHE 171 597 597 PHE PHE A . n A 1 172 GLY 172 598 598 GLY GLY A . n A 1 173 CYS 173 599 599 CYS CYS A . n A 1 174 SER 174 600 600 SER SER A . n A 1 175 LEU 175 601 601 LEU LEU A . n A 1 176 ASN 176 602 602 ASN ASN A . n A 1 177 PRO 177 603 603 PRO PRO A . n A 1 178 PHE 178 604 604 PHE PHE A . n A 1 179 ASN 179 605 605 ASN ASN A . n A 1 180 ALA 180 606 606 ALA ALA A . n A 1 181 LEU 181 607 607 LEU LEU A . n A 1 182 LYS 182 608 608 LYS LYS A . n A 1 183 HIS 183 609 609 HIS HIS A . n A 1 184 LEU 184 610 610 LEU LEU A . n A 1 185 THR 185 611 611 THR THR A . n A 1 186 VAL 186 612 612 VAL VAL A . n A 1 187 GLN 187 613 613 GLN GLN A . n A 1 188 PHE 188 614 614 PHE PHE A . n A 1 189 ILE 189 615 615 ILE ILE A . n A 1 190 LYS 190 616 616 LYS LYS A . n A 1 191 ILE 191 617 617 ILE ILE A . n A 1 192 ASP 192 618 618 ASP ASP A . n A 1 193 GLY 193 619 619 GLY GLY A . n A 1 194 SER 194 620 620 SER SER A . n A 1 195 PHE 195 621 621 PHE PHE A . n A 1 196 VAL 196 622 622 VAL VAL A . n A 1 197 GLN 197 623 623 GLN GLN A . n A 1 198 ASP 198 624 624 ASP ASP A . n A 1 199 LEU 199 625 625 LEU LEU A . n A 1 200 ASN 200 626 626 ASN ASN A . n A 1 201 GLN 201 627 627 GLN GLN A . n A 1 202 VAL 202 628 628 VAL VAL A . n A 1 203 GLU 203 629 629 GLU GLU A . n A 1 204 ASN 204 630 630 ASN ASN A . n A 1 205 GLN 205 631 631 GLN GLN A . n A 1 206 GLU 206 632 632 GLU GLU A . n A 1 207 ILE 207 633 633 ILE ILE A . n A 1 208 LEU 208 634 634 LEU LEU A . n A 1 209 LYS 209 635 635 LYS LYS A . n A 1 210 GLY 210 636 636 GLY GLY A . n A 1 211 LEU 211 637 637 LEU LEU A . n A 1 212 ILE 212 638 638 ILE ILE A . n A 1 213 ALA 213 639 639 ALA ALA A . n A 1 214 GLU 214 640 640 GLU GLU A . n A 1 215 LEU 215 641 641 LEU LEU A . n A 1 216 HIS 216 642 642 HIS HIS A . n A 1 217 GLU 217 643 643 GLU GLU A . n A 1 218 GLN 218 644 644 GLN GLN A . n A 1 219 GLN 219 645 645 GLN GLN A . n A 1 220 LYS 220 646 646 LYS LYS A . n A 1 221 LEU 221 647 647 LEU LEU A . n A 1 222 SER 222 648 648 SER SER A . n A 1 223 ILE 223 649 649 ILE ILE A . n A 1 224 VAL 224 650 650 VAL VAL A . n A 1 225 PRO 225 651 651 PRO PRO A . n A 1 226 PHE 226 652 652 PHE PHE A . n A 1 227 VAL 227 653 653 VAL VAL A . n A 1 228 GLU 228 654 654 GLU GLU A . n A 1 229 SER 229 655 655 SER SER A . n A 1 230 ALA 230 656 656 ALA ALA A . n A 1 231 SER 231 657 657 SER SER A . n A 1 232 VAL 232 658 658 VAL VAL A . n A 1 233 LEU 233 659 659 LEU LEU A . n A 1 234 ALA 234 660 660 ALA ALA A . n A 1 235 THR 235 661 661 THR THR A . n A 1 236 LEU 236 662 662 LEU LEU A . n A 1 237 TRP 237 663 663 TRP TRP A . n A 1 238 GLN 238 664 664 GLN GLN A . n A 1 239 ALA 239 665 665 ALA ALA A . n A 1 240 GLY 240 666 666 GLY GLY A . n A 1 241 ALA 241 667 667 ALA ALA A . n A 1 242 THR 242 668 668 THR THR A . n A 1 243 TYR 243 669 669 TYR TYR A . n A 1 244 ILE 244 670 670 ILE ILE A . n A 1 245 GLN 245 671 671 GLN GLN A . n A 1 246 GLY 246 672 672 GLY GLY A . n A 1 247 TYR 247 673 673 TYR TYR A . n A 1 248 TYR 248 674 674 TYR TYR A . n A 1 249 LEU 249 675 675 LEU LEU A . n A 1 250 GLN 250 676 676 GLN GLN A . n A 1 251 GLY 251 677 677 GLY GLY A . n A 1 252 PRO 252 678 678 PRO PRO A . n A 1 253 SER 253 679 679 SER SER A . n A 1 254 GLN 254 680 680 GLN GLN A . n A 1 255 ALA 255 681 681 ALA ALA A . n A 1 256 MET 256 682 682 MET MET A . n A 1 257 ASP 257 683 683 ASP ASP A . n A 1 258 TYR 258 684 684 TYR TYR A . n A 1 259 ASP 259 685 685 ASP ASP A . n A 1 260 PHE 260 686 686 PHE PHE A . n A 1 261 SER 261 687 687 SER SER A . n A 1 262 SER 262 688 688 SER SER A . n A 1 263 GLY 263 689 689 GLY GLY A . n A 1 264 ASP 264 690 ? ? ? A . n A 1 265 GLU 265 691 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 901 1 GOL GOL A . C 2 GOL 1 902 2 GOL GOL A . D 2 GOL 1 903 3 GOL GOL A . E 2 GOL 1 904 4 GOL GOL A . F 2 GOL 1 905 5 GOL GOL A . G 2 GOL 1 906 6 GOL GOL A . H 3 HOH 1 1 1 HOH HOH A . H 3 HOH 2 2 2 HOH HOH A . H 3 HOH 3 3 3 HOH HOH A . H 3 HOH 4 4 4 HOH HOH A . H 3 HOH 5 5 5 HOH HOH A . H 3 HOH 6 6 6 HOH HOH A . H 3 HOH 7 7 7 HOH HOH A . H 3 HOH 8 8 8 HOH HOH A . H 3 HOH 9 9 9 HOH HOH A . H 3 HOH 10 10 10 HOH HOH A . H 3 HOH 11 11 11 HOH HOH A . H 3 HOH 12 12 12 HOH HOH A . H 3 HOH 13 13 13 HOH HOH A . H 3 HOH 14 14 14 HOH HOH A . H 3 HOH 15 15 15 HOH HOH A . H 3 HOH 16 16 16 HOH HOH A . H 3 HOH 17 17 17 HOH HOH A . H 3 HOH 18 18 18 HOH HOH A . H 3 HOH 19 19 19 HOH HOH A . H 3 HOH 20 20 20 HOH HOH A . H 3 HOH 21 21 21 HOH HOH A . H 3 HOH 22 22 22 HOH HOH A . H 3 HOH 23 23 23 HOH HOH A . H 3 HOH 24 24 24 HOH HOH A . H 3 HOH 25 25 25 HOH HOH A . H 3 HOH 26 26 26 HOH HOH A . H 3 HOH 27 27 27 HOH HOH A . H 3 HOH 28 28 28 HOH HOH A . H 3 HOH 29 29 29 HOH HOH A . H 3 HOH 30 30 30 HOH HOH A . H 3 HOH 31 31 31 HOH HOH A . H 3 HOH 32 32 32 HOH HOH A . H 3 HOH 33 33 33 HOH HOH A . H 3 HOH 34 34 34 HOH HOH A . H 3 HOH 35 35 35 HOH HOH A . H 3 HOH 36 36 36 HOH HOH A . H 3 HOH 37 37 37 HOH HOH A . H 3 HOH 38 38 38 HOH HOH A . H 3 HOH 39 39 39 HOH HOH A . H 3 HOH 40 40 40 HOH HOH A . H 3 HOH 41 41 41 HOH HOH A . H 3 HOH 42 42 42 HOH HOH A . H 3 HOH 43 43 43 HOH HOH A . H 3 HOH 44 44 44 HOH HOH A . H 3 HOH 45 45 45 HOH HOH A . H 3 HOH 46 46 46 HOH HOH A . H 3 HOH 47 47 47 HOH HOH A . H 3 HOH 48 48 48 HOH HOH A . H 3 HOH 49 49 49 HOH HOH A . H 3 HOH 50 50 50 HOH HOH A . H 3 HOH 51 52 52 HOH HOH A . H 3 HOH 52 53 53 HOH HOH A . H 3 HOH 53 55 55 HOH HOH A . H 3 HOH 54 56 56 HOH HOH A . H 3 HOH 55 57 57 HOH HOH A . H 3 HOH 56 59 59 HOH HOH A . H 3 HOH 57 60 60 HOH HOH A . H 3 HOH 58 61 61 HOH HOH A . H 3 HOH 59 62 62 HOH HOH A . H 3 HOH 60 63 63 HOH HOH A . H 3 HOH 61 64 64 HOH HOH A . H 3 HOH 62 65 65 HOH HOH A . H 3 HOH 63 67 67 HOH HOH A . H 3 HOH 64 68 68 HOH HOH A . H 3 HOH 65 69 69 HOH HOH A . H 3 HOH 66 70 70 HOH HOH A . H 3 HOH 67 71 71 HOH HOH A . H 3 HOH 68 72 72 HOH HOH A . H 3 HOH 69 73 73 HOH HOH A . H 3 HOH 70 74 74 HOH HOH A . H 3 HOH 71 75 75 HOH HOH A . H 3 HOH 72 76 76 HOH HOH A . H 3 HOH 73 77 77 HOH HOH A . H 3 HOH 74 78 78 HOH HOH A . H 3 HOH 75 79 79 HOH HOH A . H 3 HOH 76 80 80 HOH HOH A . H 3 HOH 77 81 81 HOH HOH A . H 3 HOH 78 82 82 HOH HOH A . H 3 HOH 79 83 83 HOH HOH A . H 3 HOH 80 84 84 HOH HOH A . H 3 HOH 81 85 85 HOH HOH A . H 3 HOH 82 86 86 HOH HOH A . H 3 HOH 83 87 87 HOH HOH A . H 3 HOH 84 88 88 HOH HOH A . H 3 HOH 85 89 89 HOH HOH A . H 3 HOH 86 90 90 HOH HOH A . H 3 HOH 87 91 91 HOH HOH A . H 3 HOH 88 92 92 HOH HOH A . H 3 HOH 89 93 93 HOH HOH A . H 3 HOH 90 94 94 HOH HOH A . H 3 HOH 91 95 95 HOH HOH A . H 3 HOH 92 96 96 HOH HOH A . H 3 HOH 93 97 97 HOH HOH A . H 3 HOH 94 98 98 HOH HOH A . H 3 HOH 95 100 100 HOH HOH A . H 3 HOH 96 101 101 HOH HOH A . H 3 HOH 97 102 102 HOH HOH A . H 3 HOH 98 103 103 HOH HOH A . H 3 HOH 99 104 104 HOH HOH A . H 3 HOH 100 105 105 HOH HOH A . H 3 HOH 101 106 106 HOH HOH A . H 3 HOH 102 108 108 HOH HOH A . H 3 HOH 103 109 109 HOH HOH A . H 3 HOH 104 110 110 HOH HOH A . H 3 HOH 105 111 111 HOH HOH A . H 3 HOH 106 112 112 HOH HOH A . H 3 HOH 107 114 114 HOH HOH A . H 3 HOH 108 115 115 HOH HOH A . H 3 HOH 109 116 116 HOH HOH A . H 3 HOH 110 117 117 HOH HOH A . H 3 HOH 111 118 118 HOH HOH A . H 3 HOH 112 120 120 HOH HOH A . H 3 HOH 113 122 122 HOH HOH A . H 3 HOH 114 123 123 HOH HOH A . H 3 HOH 115 124 124 HOH HOH A . H 3 HOH 116 125 125 HOH HOH A . H 3 HOH 117 126 126 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-03-21 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHENIX 'model building' . ? 2 PHENIX refinement . ? 3 XDS 'data reduction' . ? 4 XDS 'data scaling' . ? 5 PHENIX phasing . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 527 ? ? -78.34 48.91 2 1 PRO A 558 ? ? -48.85 156.81 3 1 SER A 688 ? ? -151.89 24.51 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 427 ? A GLY 1 2 1 Y 1 A SER 428 ? A SER 2 3 1 Y 1 A ASP 690 ? A ASP 264 4 1 Y 1 A GLU 691 ? A GLU 265 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TRP N N N N 335 TRP CA C N S 336 TRP C C N N 337 TRP O O N N 338 TRP CB C N N 339 TRP CG C Y N 340 TRP CD1 C Y N 341 TRP CD2 C Y N 342 TRP NE1 N Y N 343 TRP CE2 C Y N 344 TRP CE3 C Y N 345 TRP CZ2 C Y N 346 TRP CZ3 C Y N 347 TRP CH2 C Y N 348 TRP OXT O N N 349 TRP H H N N 350 TRP H2 H N N 351 TRP HA H N N 352 TRP HB2 H N N 353 TRP HB3 H N N 354 TRP HD1 H N N 355 TRP HE1 H N N 356 TRP HE3 H N N 357 TRP HZ2 H N N 358 TRP HZ3 H N N 359 TRP HH2 H N N 360 TRP HXT H N N 361 TYR N N N N 362 TYR CA C N S 363 TYR C C N N 364 TYR O O N N 365 TYR CB C N N 366 TYR CG C Y N 367 TYR CD1 C Y N 368 TYR CD2 C Y N 369 TYR CE1 C Y N 370 TYR CE2 C Y N 371 TYR CZ C Y N 372 TYR OH O N N 373 TYR OXT O N N 374 TYR H H N N 375 TYR H2 H N N 376 TYR HA H N N 377 TYR HB2 H N N 378 TYR HB3 H N N 379 TYR HD1 H N N 380 TYR HD2 H N N 381 TYR HE1 H N N 382 TYR HE2 H N N 383 TYR HH H N N 384 TYR HXT H N N 385 VAL N N N N 386 VAL CA C N S 387 VAL C C N N 388 VAL O O N N 389 VAL CB C N N 390 VAL CG1 C N N 391 VAL CG2 C N N 392 VAL OXT O N N 393 VAL H H N N 394 VAL H2 H N N 395 VAL HA H N N 396 VAL HB H N N 397 VAL HG11 H N N 398 VAL HG12 H N N 399 VAL HG13 H N N 400 VAL HG21 H N N 401 VAL HG22 H N N 402 VAL HG23 H N N 403 VAL HXT H N N 404 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3HVB _pdbx_initial_refinement_model.details 'PDB entry 3HVB' #