HEADER HYDROLASE 15-JUN-09 3HVB OBSLTE 20-FEB-13 3HVB 4J40 TITLE CRYSTAL STRUCTURE OF THE DUAL-DOMAIN GGDEF-EAL MODULE OF FIMX FROM TITLE 2 PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FIMX; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GGDEF AND EAL DOMAINS: UNP RESIDUES 260-691; COMPND 5 EC: 3.1.4.52; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 ATCC: 15692; SOURCE 6 GENE: FIMX, PA4959; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPSUMO KEYWDS EAL PHOSPHODIESTERASE, BIOFILM, C-DI-GMP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.V.A.S.NAVARRO,N.DE,N.BAE,H.SONDERMANN REVDAT 3 20-FEB-13 3HVB 1 OBSLTE REVDAT 2 21-MAR-12 3HVB 1 JRNL VERSN REVDAT 1 18-AUG-09 3HVB 0 JRNL AUTH M.V.NAVARRO,N.DE,N.BAE,Q.WANG,H.SONDERMANN JRNL TITL STRUCTURAL ANALYSIS OF THE GGDEF-EAL DOMAIN-CONTAINING JRNL TITL 2 C-DI-GMP RECEPTOR FIMX. JRNL REF STRUCTURE V. 17 1104 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19679088 JRNL DOI 10.1016/J.STR.2009.06.010 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 21.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 20713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.8000 - 5.9683 0.98 2857 161 0.1921 0.2617 REMARK 3 2 5.9683 - 4.7458 0.98 2728 134 0.1755 0.1908 REMARK 3 3 4.7458 - 4.1484 0.96 2613 142 0.1582 0.2004 REMARK 3 4 4.1484 - 3.7702 0.91 2463 131 0.1889 0.2414 REMARK 3 5 3.7702 - 3.5006 0.93 2495 149 0.2189 0.2544 REMARK 3 6 3.5006 - 3.2946 0.88 2343 127 0.2529 0.2900 REMARK 3 7 3.2946 - 3.1299 0.82 2188 118 0.2724 0.3336 REMARK 3 8 3.1299 - 2.9940 0.73 1955 109 0.2958 0.3586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 52.42 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 NULL REMARK 3 ANGLE : 1.362 NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB053626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9771 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42159 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.994 REMARK 200 RESOLUTION RANGE LOW (A) : 48.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA FORMATE, PH 5.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.67550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.12550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.12550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.33775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.12550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.12550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 145.01325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.12550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.12550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.33775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.12550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.12550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 145.01325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 96.67550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 255 REMARK 465 ALA A 256 REMARK 465 MET A 257 REMARK 465 GLY A 258 REMARK 465 SER A 259 REMARK 465 GLU A 260 REMARK 465 GLU A 261 REMARK 465 LYS A 262 REMARK 465 LEU A 263 REMARK 465 ARG A 264 REMARK 465 GLU A 265 REMARK 465 VAL A 266 REMARK 465 SER A 267 REMARK 465 SER A 268 REMARK 465 GLN A 269 REMARK 465 ASP A 270 REMARK 465 PRO A 271 REMARK 465 VAL A 272 REMARK 465 THR A 273 REMARK 465 GLY A 274 REMARK 465 LEU A 275 REMARK 465 TYR A 276 REMARK 465 ASN A 277 REMARK 465 ARG A 278 REMARK 465 SER A 279 REMARK 465 HIS A 280 REMARK 465 PHE A 281 REMARK 465 LEU A 282 REMARK 465 ASP A 283 REMARK 465 LEU A 284 REMARK 465 MET A 285 REMARK 465 ASP A 286 REMARK 465 ALA A 287 REMARK 465 ALA A 288 REMARK 465 VAL A 289 REMARK 465 GLN A 290 REMARK 465 GLN A 291 REMARK 465 ALA A 292 REMARK 465 VAL A 293 REMARK 465 THR A 294 REMARK 465 ALA A 295 REMARK 465 ARG A 296 REMARK 465 LYS A 297 REMARK 465 PRO A 298 REMARK 465 SER A 299 REMARK 465 THR A 300 REMARK 465 LEU A 301 REMARK 465 ALA A 302 REMARK 465 TYR A 303 REMARK 465 ILE A 304 REMARK 465 HIS A 305 REMARK 465 LEU A 306 REMARK 465 ASN A 307 REMARK 465 GLY A 308 REMARK 465 TYR A 309 REMARK 465 PRO A 310 REMARK 465 SER A 311 REMARK 465 LEU A 312 REMARK 465 GLN A 313 REMARK 465 ALA A 314 REMARK 465 ASP A 315 REMARK 465 HIS A 316 REMARK 465 GLY A 317 REMARK 465 LEU A 318 REMARK 465 SER A 319 REMARK 465 GLY A 320 REMARK 465 ILE A 321 REMARK 465 ASP A 322 REMARK 465 LEU A 323 REMARK 465 LEU A 324 REMARK 465 LEU A 325 REMARK 465 GLY A 326 REMARK 465 GLN A 327 REMARK 465 LEU A 328 REMARK 465 ALA A 329 REMARK 465 GLY A 330 REMARK 465 LEU A 331 REMARK 465 MET A 332 REMARK 465 ARG A 333 REMARK 465 GLU A 334 REMARK 465 GLN A 335 REMARK 465 PHE A 336 REMARK 465 GLY A 337 REMARK 465 GLU A 338 REMARK 465 GLU A 339 REMARK 465 ALA A 340 REMARK 465 ASP A 341 REMARK 465 LEU A 342 REMARK 465 ALA A 343 REMARK 465 ARG A 344 REMARK 465 PHE A 345 REMARK 465 GLY A 346 REMARK 465 ASP A 347 REMARK 465 SER A 348 REMARK 465 ILE A 349 REMARK 465 PHE A 350 REMARK 465 ALA A 351 REMARK 465 ALA A 352 REMARK 465 LEU A 353 REMARK 465 PHE A 354 REMARK 465 LYS A 355 REMARK 465 GLY A 356 REMARK 465 LYS A 357 REMARK 465 THR A 358 REMARK 465 PRO A 359 REMARK 465 GLU A 360 REMARK 465 GLN A 361 REMARK 465 ALA A 362 REMARK 465 GLN A 363 REMARK 465 ALA A 364 REMARK 465 ALA A 365 REMARK 465 LEU A 366 REMARK 465 GLN A 367 REMARK 465 ARG A 368 REMARK 465 LEU A 369 REMARK 465 LEU A 370 REMARK 465 LYS A 371 REMARK 465 LYS A 372 REMARK 465 VAL A 373 REMARK 465 GLU A 374 REMARK 465 ASN A 375 REMARK 465 HIS A 376 REMARK 465 LEU A 377 REMARK 465 PHE A 378 REMARK 465 GLU A 379 REMARK 465 LEU A 380 REMARK 465 ASN A 381 REMARK 465 GLY A 382 REMARK 465 ARG A 383 REMARK 465 SER A 384 REMARK 465 ALA A 385 REMARK 465 GLN A 386 REMARK 465 ALA A 387 REMARK 465 THR A 388 REMARK 465 LEU A 389 REMARK 465 SER A 390 REMARK 465 ILE A 391 REMARK 465 GLY A 392 REMARK 465 VAL A 393 REMARK 465 ALA A 394 REMARK 465 GLY A 395 REMARK 465 LEU A 396 REMARK 465 ASP A 397 REMARK 465 GLU A 398 REMARK 465 LYS A 399 REMARK 465 THR A 400 REMARK 465 ALA A 401 REMARK 465 LYS A 402 REMARK 465 ALA A 403 REMARK 465 GLN A 404 REMARK 465 ASP A 405 REMARK 465 VAL A 406 REMARK 465 MET A 407 REMARK 465 ASN A 408 REMARK 465 ARG A 409 REMARK 465 ALA A 410 REMARK 465 HIS A 411 REMARK 465 ARG A 412 REMARK 465 CYS A 413 REMARK 465 ALA A 414 REMARK 465 ASP A 415 REMARK 465 ASP A 416 REMARK 465 ALA A 417 REMARK 465 ALA A 418 REMARK 465 ARG A 419 REMARK 465 LYS A 420 REMARK 465 GLY A 421 REMARK 465 GLY A 422 REMARK 465 SER A 423 REMARK 465 GLN A 424 REMARK 465 ILE A 425 REMARK 465 LYS A 426 REMARK 465 GLN A 427 REMARK 465 TYR A 428 REMARK 465 ASN A 429 REMARK 465 PRO A 430 REMARK 465 ALA A 431 REMARK 465 GLU A 432 REMARK 465 GLU A 433 REMARK 465 LEU A 434 REMARK 465 ALA A 435 REMARK 465 ALA A 436 REMARK 465 SER A 688 REMARK 465 GLY A 689 REMARK 465 ASP A 690 REMARK 465 GLU A 691 REMARK 465 GLY B 255 REMARK 465 ALA B 256 REMARK 465 MET B 257 REMARK 465 GLY B 258 REMARK 465 SER B 259 REMARK 465 GLU B 260 REMARK 465 GLU B 261 REMARK 465 LYS B 262 REMARK 465 LEU B 263 REMARK 465 ARG B 264 REMARK 465 GLU B 265 REMARK 465 VAL B 266 REMARK 465 SER B 267 REMARK 465 SER B 268 REMARK 465 GLN B 269 REMARK 465 ASP B 270 REMARK 465 PRO B 271 REMARK 465 VAL B 272 REMARK 465 THR B 273 REMARK 465 GLY B 274 REMARK 465 LEU B 275 REMARK 465 TYR B 276 REMARK 465 ASN B 277 REMARK 465 ARG B 278 REMARK 465 SER B 279 REMARK 465 HIS B 280 REMARK 465 PHE B 281 REMARK 465 LEU B 282 REMARK 465 ASP B 283 REMARK 465 LEU B 284 REMARK 465 MET B 285 REMARK 465 ASP B 286 REMARK 465 ALA B 287 REMARK 465 ALA B 288 REMARK 465 VAL B 289 REMARK 465 GLN B 290 REMARK 465 GLN B 291 REMARK 465 ALA B 292 REMARK 465 VAL B 293 REMARK 465 THR B 294 REMARK 465 ALA B 295 REMARK 465 ARG B 296 REMARK 465 LYS B 297 REMARK 465 PRO B 298 REMARK 465 SER B 299 REMARK 465 THR B 300 REMARK 465 LEU B 301 REMARK 465 ALA B 302 REMARK 465 TYR B 303 REMARK 465 ILE B 304 REMARK 465 HIS B 305 REMARK 465 LEU B 306 REMARK 465 ASN B 307 REMARK 465 GLY B 308 REMARK 465 TYR B 309 REMARK 465 PRO B 310 REMARK 465 SER B 311 REMARK 465 LEU B 312 REMARK 465 GLN B 313 REMARK 465 ALA B 314 REMARK 465 ASP B 315 REMARK 465 HIS B 316 REMARK 465 GLY B 317 REMARK 465 LEU B 318 REMARK 465 SER B 319 REMARK 465 GLY B 320 REMARK 465 ILE B 321 REMARK 465 ASP B 322 REMARK 465 LEU B 323 REMARK 465 LEU B 324 REMARK 465 LEU B 325 REMARK 465 GLY B 326 REMARK 465 GLN B 327 REMARK 465 LEU B 328 REMARK 465 ALA B 329 REMARK 465 GLY B 330 REMARK 465 LEU B 331 REMARK 465 MET B 332 REMARK 465 ARG B 333 REMARK 465 GLU B 334 REMARK 465 GLN B 335 REMARK 465 PHE B 336 REMARK 465 GLY B 337 REMARK 465 GLU B 338 REMARK 465 GLU B 339 REMARK 465 ALA B 340 REMARK 465 ASP B 341 REMARK 465 LEU B 342 REMARK 465 ALA B 343 REMARK 465 ARG B 344 REMARK 465 PHE B 345 REMARK 465 GLY B 346 REMARK 465 ASP B 347 REMARK 465 SER B 348 REMARK 465 ILE B 349 REMARK 465 PHE B 350 REMARK 465 ALA B 351 REMARK 465 ALA B 352 REMARK 465 LEU B 353 REMARK 465 PHE B 354 REMARK 465 LYS B 355 REMARK 465 GLY B 356 REMARK 465 LYS B 357 REMARK 465 THR B 358 REMARK 465 PRO B 359 REMARK 465 GLU B 360 REMARK 465 GLN B 361 REMARK 465 ALA B 362 REMARK 465 GLN B 363 REMARK 465 ALA B 364 REMARK 465 ALA B 365 REMARK 465 LEU B 366 REMARK 465 GLN B 367 REMARK 465 ARG B 368 REMARK 465 LEU B 369 REMARK 465 LEU B 370 REMARK 465 LYS B 371 REMARK 465 LYS B 372 REMARK 465 VAL B 373 REMARK 465 GLU B 374 REMARK 465 ASN B 375 REMARK 465 HIS B 376 REMARK 465 LEU B 377 REMARK 465 PHE B 378 REMARK 465 GLU B 379 REMARK 465 LEU B 380 REMARK 465 ASN B 381 REMARK 465 GLY B 382 REMARK 465 ARG B 383 REMARK 465 SER B 384 REMARK 465 ALA B 385 REMARK 465 GLN B 386 REMARK 465 ALA B 387 REMARK 465 THR B 388 REMARK 465 LEU B 389 REMARK 465 SER B 390 REMARK 465 ILE B 391 REMARK 465 GLY B 392 REMARK 465 VAL B 393 REMARK 465 ALA B 394 REMARK 465 GLY B 395 REMARK 465 LEU B 396 REMARK 465 ASP B 397 REMARK 465 GLU B 398 REMARK 465 LYS B 399 REMARK 465 THR B 400 REMARK 465 ALA B 401 REMARK 465 LYS B 402 REMARK 465 ALA B 403 REMARK 465 GLN B 404 REMARK 465 ASP B 405 REMARK 465 VAL B 406 REMARK 465 MET B 407 REMARK 465 ASN B 408 REMARK 465 ARG B 409 REMARK 465 ALA B 410 REMARK 465 HIS B 411 REMARK 465 ARG B 412 REMARK 465 CYS B 413 REMARK 465 ALA B 414 REMARK 465 ASP B 415 REMARK 465 ASP B 416 REMARK 465 ALA B 417 REMARK 465 ALA B 418 REMARK 465 ARG B 419 REMARK 465 LYS B 420 REMARK 465 GLY B 421 REMARK 465 GLY B 422 REMARK 465 SER B 423 REMARK 465 GLN B 424 REMARK 465 ILE B 425 REMARK 465 LYS B 426 REMARK 465 GLN B 427 REMARK 465 TYR B 428 REMARK 465 ASN B 429 REMARK 465 PRO B 430 REMARK 465 ALA B 431 REMARK 465 GLU B 432 REMARK 465 GLU B 433 REMARK 465 LEU B 434 REMARK 465 ALA B 435 REMARK 465 ALA B 436 REMARK 465 SER B 688 REMARK 465 GLY B 689 REMARK 465 ASP B 690 REMARK 465 GLU B 691 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 574 NZ LYS A 576 7555 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 456 128.83 -39.35 REMARK 500 ARG A 467 8.01 -155.09 REMARK 500 GLN A 486 157.12 -46.38 REMARK 500 TYR A 574 60.83 -118.97 REMARK 500 HIS A 589 63.40 64.47 REMARK 500 VAL A 622 55.37 -98.38 REMARK 500 GLN A 645 28.88 41.18 REMARK 500 GLN A 676 122.21 -176.87 REMARK 500 TYR A 684 125.41 -38.36 REMARK 500 HIS B 471 -177.15 42.65 REMARK 500 ALA B 503 -66.38 -23.40 REMARK 500 ALA B 523 46.99 -77.35 REMARK 500 LYS B 524 -2.39 -145.53 REMARK 500 ALA B 537 -71.18 -41.32 REMARK 500 TYR B 574 59.11 -114.07 REMARK 500 SER B 655 145.99 175.91 REMARK 500 GLN B 676 133.85 -174.99 REMARK 500 TYR B 684 117.96 -39.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HV8 RELATED DB: PDB REMARK 900 FIMX EAL DOMAIN C-DI-GMP BOUND REMARK 900 RELATED ID: 3HV9 RELATED DB: PDB REMARK 900 FIMX EAL DOMAIN C-DI-GMP FREE REMARK 900 RELATED ID: 3HVA RELATED DB: PDB REMARK 900 FIMX GGDEF DOMAIN DBREF 3HVB A 260 691 UNP Q9HUK6 Q9HUK6_PSEAE 260 691 DBREF 3HVB B 260 691 UNP Q9HUK6 Q9HUK6_PSEAE 260 691 SEQADV 3HVB GLY A 255 UNP Q9HUK6 EXPRESSION TAG SEQADV 3HVB ALA A 256 UNP Q9HUK6 EXPRESSION TAG SEQADV 3HVB MET A 257 UNP Q9HUK6 EXPRESSION TAG SEQADV 3HVB GLY A 258 UNP Q9HUK6 EXPRESSION TAG SEQADV 3HVB SER A 259 UNP Q9HUK6 EXPRESSION TAG SEQADV 3HVB GLY B 255 UNP Q9HUK6 EXPRESSION TAG SEQADV 3HVB ALA B 256 UNP Q9HUK6 EXPRESSION TAG SEQADV 3HVB MET B 257 UNP Q9HUK6 EXPRESSION TAG SEQADV 3HVB GLY B 258 UNP Q9HUK6 EXPRESSION TAG SEQADV 3HVB SER B 259 UNP Q9HUK6 EXPRESSION TAG SEQRES 1 A 437 GLY ALA MET GLY SER GLU GLU LYS LEU ARG GLU VAL SER SEQRES 2 A 437 SER GLN ASP PRO VAL THR GLY LEU TYR ASN ARG SER HIS SEQRES 3 A 437 PHE LEU ASP LEU MET ASP ALA ALA VAL GLN GLN ALA VAL SEQRES 4 A 437 THR ALA ARG LYS PRO SER THR LEU ALA TYR ILE HIS LEU SEQRES 5 A 437 ASN GLY TYR PRO SER LEU GLN ALA ASP HIS GLY LEU SER SEQRES 6 A 437 GLY ILE ASP LEU LEU LEU GLY GLN LEU ALA GLY LEU MET SEQRES 7 A 437 ARG GLU GLN PHE GLY GLU GLU ALA ASP LEU ALA ARG PHE SEQRES 8 A 437 GLY ASP SER ILE PHE ALA ALA LEU PHE LYS GLY LYS THR SEQRES 9 A 437 PRO GLU GLN ALA GLN ALA ALA LEU GLN ARG LEU LEU LYS SEQRES 10 A 437 LYS VAL GLU ASN HIS LEU PHE GLU LEU ASN GLY ARG SER SEQRES 11 A 437 ALA GLN ALA THR LEU SER ILE GLY VAL ALA GLY LEU ASP SEQRES 12 A 437 GLU LYS THR ALA LYS ALA GLN ASP VAL MET ASN ARG ALA SEQRES 13 A 437 HIS ARG CYS ALA ASP ASP ALA ALA ARG LYS GLY GLY SER SEQRES 14 A 437 GLN ILE LYS GLN TYR ASN PRO ALA GLU GLU LEU ALA ALA SEQRES 15 A 437 ALA ALA GLN ARG GLY ASP VAL ILE ALA ILE LEU GLN GLN SEQRES 16 A 437 ALA LEU GLU THR ASN SER PHE ARG LEU LEU PHE GLN PRO SEQRES 17 A 437 VAL ILE SER LEU ARG GLY ASP SER HIS GLU ASN TYR GLU SEQRES 18 A 437 VAL LEU LEU ARG LEU LEU ASN PRO GLN GLY GLN GLU VAL SEQRES 19 A 437 PRO PRO ALA GLU PHE LEU HIS ALA ALA LYS GLU ALA GLY SEQRES 20 A 437 LEU ALA GLU LYS ILE ASP ARG TRP VAL ILE LEU ASN SER SEQRES 21 A 437 ILE LYS LEU LEU ALA GLU HIS ARG ALA LYS GLY HIS GLN SEQRES 22 A 437 THR LYS LEU PHE VAL HIS LEU SER SER ALA SER LEU GLN SEQRES 23 A 437 ASP PRO GLY LEU LEU PRO TRP LEU GLY VAL ALA LEU LYS SEQRES 24 A 437 ALA ALA ARG LEU PRO PRO GLU SER LEU VAL PHE GLN ILE SEQRES 25 A 437 SER GLU ALA ASP ALA THR SER TYR LEU LYS GLN ALA LYS SEQRES 26 A 437 GLN LEU THR GLN GLY LEU ALA THR LEU HIS CYS GLN ALA SEQRES 27 A 437 ALA ILE SER GLN PHE GLY CYS SER LEU ASN PRO PHE ASN SEQRES 28 A 437 ALA LEU LYS HIS LEU THR VAL GLN PHE ILE LYS ILE ASP SEQRES 29 A 437 GLY SER PHE VAL GLN ASP LEU ASN GLN VAL GLU ASN GLN SEQRES 30 A 437 GLU ILE LEU LYS GLY LEU ILE ALA GLU LEU HIS GLU GLN SEQRES 31 A 437 GLN LYS LEU SER ILE VAL PRO PHE VAL GLU SER ALA SER SEQRES 32 A 437 VAL LEU ALA THR LEU TRP GLN ALA GLY ALA THR TYR ILE SEQRES 33 A 437 GLN GLY TYR TYR LEU GLN GLY PRO SER GLN ALA MET ASP SEQRES 34 A 437 TYR ASP PHE SER SER GLY ASP GLU SEQRES 1 B 437 GLY ALA MET GLY SER GLU GLU LYS LEU ARG GLU VAL SER SEQRES 2 B 437 SER GLN ASP PRO VAL THR GLY LEU TYR ASN ARG SER HIS SEQRES 3 B 437 PHE LEU ASP LEU MET ASP ALA ALA VAL GLN GLN ALA VAL SEQRES 4 B 437 THR ALA ARG LYS PRO SER THR LEU ALA TYR ILE HIS LEU SEQRES 5 B 437 ASN GLY TYR PRO SER LEU GLN ALA ASP HIS GLY LEU SER SEQRES 6 B 437 GLY ILE ASP LEU LEU LEU GLY GLN LEU ALA GLY LEU MET SEQRES 7 B 437 ARG GLU GLN PHE GLY GLU GLU ALA ASP LEU ALA ARG PHE SEQRES 8 B 437 GLY ASP SER ILE PHE ALA ALA LEU PHE LYS GLY LYS THR SEQRES 9 B 437 PRO GLU GLN ALA GLN ALA ALA LEU GLN ARG LEU LEU LYS SEQRES 10 B 437 LYS VAL GLU ASN HIS LEU PHE GLU LEU ASN GLY ARG SER SEQRES 11 B 437 ALA GLN ALA THR LEU SER ILE GLY VAL ALA GLY LEU ASP SEQRES 12 B 437 GLU LYS THR ALA LYS ALA GLN ASP VAL MET ASN ARG ALA SEQRES 13 B 437 HIS ARG CYS ALA ASP ASP ALA ALA ARG LYS GLY GLY SER SEQRES 14 B 437 GLN ILE LYS GLN TYR ASN PRO ALA GLU GLU LEU ALA ALA SEQRES 15 B 437 ALA ALA GLN ARG GLY ASP VAL ILE ALA ILE LEU GLN GLN SEQRES 16 B 437 ALA LEU GLU THR ASN SER PHE ARG LEU LEU PHE GLN PRO SEQRES 17 B 437 VAL ILE SER LEU ARG GLY ASP SER HIS GLU ASN TYR GLU SEQRES 18 B 437 VAL LEU LEU ARG LEU LEU ASN PRO GLN GLY GLN GLU VAL SEQRES 19 B 437 PRO PRO ALA GLU PHE LEU HIS ALA ALA LYS GLU ALA GLY SEQRES 20 B 437 LEU ALA GLU LYS ILE ASP ARG TRP VAL ILE LEU ASN SER SEQRES 21 B 437 ILE LYS LEU LEU ALA GLU HIS ARG ALA LYS GLY HIS GLN SEQRES 22 B 437 THR LYS LEU PHE VAL HIS LEU SER SER ALA SER LEU GLN SEQRES 23 B 437 ASP PRO GLY LEU LEU PRO TRP LEU GLY VAL ALA LEU LYS SEQRES 24 B 437 ALA ALA ARG LEU PRO PRO GLU SER LEU VAL PHE GLN ILE SEQRES 25 B 437 SER GLU ALA ASP ALA THR SER TYR LEU LYS GLN ALA LYS SEQRES 26 B 437 GLN LEU THR GLN GLY LEU ALA THR LEU HIS CYS GLN ALA SEQRES 27 B 437 ALA ILE SER GLN PHE GLY CYS SER LEU ASN PRO PHE ASN SEQRES 28 B 437 ALA LEU LYS HIS LEU THR VAL GLN PHE ILE LYS ILE ASP SEQRES 29 B 437 GLY SER PHE VAL GLN ASP LEU ASN GLN VAL GLU ASN GLN SEQRES 30 B 437 GLU ILE LEU LYS GLY LEU ILE ALA GLU LEU HIS GLU GLN SEQRES 31 B 437 GLN LYS LEU SER ILE VAL PRO PHE VAL GLU SER ALA SER SEQRES 32 B 437 VAL LEU ALA THR LEU TRP GLN ALA GLY ALA THR TYR ILE SEQRES 33 B 437 GLN GLY TYR TYR LEU GLN GLY PRO SER GLN ALA MET ASP SEQRES 34 B 437 TYR ASP PHE SER SER GLY ASP GLU HELIX 1 1 ASP A 442 GLN A 449 1 8 HELIX 2 2 PRO A 489 ALA A 500 1 12 HELIX 3 3 LEU A 502 ALA A 523 1 22 HELIX 4 4 SER A 535 ASP A 541 1 7 HELIX 5 5 GLY A 543 ALA A 554 1 12 HELIX 6 6 GLU A 568 TYR A 574 1 7 HELIX 7 7 TYR A 574 LEU A 588 1 15 HELIX 8 8 ASN A 602 LYS A 608 1 7 HELIX 9 9 GLY A 619 VAL A 622 5 4 HELIX 10 10 GLN A 627 GLN A 644 1 18 HELIX 11 11 SER A 655 GLY A 666 1 12 HELIX 12 12 ASP B 442 ASN B 454 1 13 HELIX 13 13 PRO B 489 ALA B 500 1 12 HELIX 14 14 LEU B 502 ALA B 523 1 22 HELIX 15 15 SER B 535 ASP B 541 1 7 HELIX 16 16 GLY B 543 GLY B 549 1 7 HELIX 17 17 VAL B 550 ALA B 551 5 2 HELIX 18 18 LEU B 552 ARG B 556 5 5 HELIX 19 19 GLU B 568 TYR B 574 1 7 HELIX 20 20 TYR B 574 LEU B 588 1 15 HELIX 21 21 PHE B 604 HIS B 609 5 6 HELIX 22 22 GLY B 619 GLN B 623 5 5 HELIX 23 23 GLN B 627 GLN B 644 1 18 HELIX 24 24 SER B 655 GLY B 666 1 12 SHEET 1 A 9 ARG A 457 PRO A 462 0 SHEET 2 A 9 GLU A 472 LEU A 481 -1 O GLU A 475 N GLN A 461 SHEET 3 A 9 THR A 528 HIS A 533 1 O PHE A 531 N TYR A 474 SHEET 4 A 9 LEU A 562 SER A 567 1 O GLN A 565 N VAL A 532 SHEET 5 A 9 GLN A 591 PHE A 597 1 O GLN A 591 N PHE A 564 SHEET 6 A 9 PHE A 614 ILE A 617 1 O LYS A 616 N ILE A 594 SHEET 7 A 9 LEU A 647 VAL A 650 1 O ILE A 649 N ILE A 617 SHEET 8 A 9 TYR A 669 ILE A 670 1 O TYR A 669 N SER A 648 SHEET 9 A 9 ILE A 464 SER A 465 -1 N ILE A 464 O ILE A 670 SHEET 1 B 3 ARG A 457 PRO A 462 0 SHEET 2 B 3 GLU A 472 LEU A 481 -1 O GLU A 475 N GLN A 461 SHEET 3 B 3 GLU A 487 VAL A 488 -1 O VAL A 488 N LEU A 480 SHEET 1 C 9 ARG B 457 PRO B 462 0 SHEET 2 C 9 GLU B 472 LEU B 481 -1 O GLU B 475 N GLN B 461 SHEET 3 C 9 THR B 528 HIS B 533 1 O LYS B 529 N GLU B 472 SHEET 4 C 9 LEU B 562 SER B 567 1 O VAL B 563 N LEU B 530 SHEET 5 C 9 GLN B 591 PHE B 597 1 O ALA B 593 N PHE B 564 SHEET 6 C 9 PHE B 614 ILE B 617 1 O LYS B 616 N PHE B 597 SHEET 7 C 9 LEU B 647 VAL B 650 1 O ILE B 649 N ILE B 617 SHEET 8 C 9 TYR B 669 ILE B 670 1 O TYR B 669 N SER B 648 SHEET 9 C 9 ILE B 464 SER B 465 -1 N ILE B 464 O ILE B 670 SHEET 1 D 3 ARG B 457 PRO B 462 0 SHEET 2 D 3 GLU B 472 LEU B 481 -1 O GLU B 475 N GLN B 461 SHEET 3 D 3 GLU B 487 VAL B 488 -1 O VAL B 488 N LEU B 480 CISPEP 1 ALA A 437 ALA A 438 0 -6.16 CISPEP 2 ALA B 437 ALA B 438 0 0.05 CRYST1 106.251 106.251 193.351 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005172 0.00000