HEADER OXIDOREDUCTASE 16-JUN-09 3HVX TITLE ESCHERICHIA COLI THIOL PEROXIDASE (TPX) RESOLVING CYSTEINE TO SERINE TITLE 2 MUTANT (C95S) WITH AN INTERMOLECULAR DISULFIDE BOND COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL PEROXIDASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: SCAVENGASE P20; COMPND 5 EC: 1.11.1.15; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12 (XL-1 BLUE); SOURCE 5 GENE: B1324, JW1317, TPX, YZZJ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: XL-1 BLUE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROK1 KEYWDS OXIDOREDUCTASE, TPX, PEROXIREDOXIN, PEROXIDASE, ANTIOXIDANT EXPDTA X-RAY DIFFRACTION AUTHOR A.HALL,B.SANKARAN,P.A.KARPLUS REVDAT 4 06-SEP-23 3HVX 1 REMARK REVDAT 3 13-OCT-21 3HVX 1 REMARK SEQADV REVDAT 2 03-NOV-09 3HVX 1 JRNL REVDAT 1 20-OCT-09 3HVX 0 JRNL AUTH A.HALL,B.SANKARAN,L.B.POOLE,P.A.KARPLUS JRNL TITL STRUCTURAL CHANGES COMMON TO CATALYSIS IN THE TPX JRNL TITL 2 PEROXIREDOXIN SUBFAMILY. JRNL REF J.MOL.BIOL. V. 393 867 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19699750 JRNL DOI 10.1016/J.JMB.2009.08.040 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0046 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 32466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3598 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2229 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4988 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.275 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.341 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5062 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3224 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6900 ; 1.588 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7948 ; 0.899 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 664 ; 6.985 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;38.665 ;25.741 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 804 ;16.202 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.557 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 848 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5732 ; 0.018 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 960 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3324 ; 3.463 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1348 ; 1.268 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5364 ; 4.505 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1738 ; 4.176 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1536 ; 5.538 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5560 -0.2520 0.6230 REMARK 3 T TENSOR REMARK 3 T11: 0.0162 T22: 0.0253 REMARK 3 T33: 0.0322 T12: 0.0027 REMARK 3 T13: -0.0027 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 3.5760 L22: 2.2061 REMARK 3 L33: 1.9891 L12: -1.3183 REMARK 3 L13: -0.5924 L23: 0.1433 REMARK 3 S TENSOR REMARK 3 S11: -0.0778 S12: -0.2467 S13: -0.2237 REMARK 3 S21: -0.0400 S22: 0.1088 S23: 0.0619 REMARK 3 S31: 0.1556 S32: 0.0209 S33: -0.0310 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 168 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8190 -29.1210 8.4720 REMARK 3 T TENSOR REMARK 3 T11: 0.0492 T22: 0.0241 REMARK 3 T33: 0.1110 T12: -0.0161 REMARK 3 T13: 0.0077 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.3827 L22: 1.7065 REMARK 3 L33: 2.3000 L12: 0.1907 REMARK 3 L13: 0.4323 L23: 0.9879 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: -0.0048 S13: 0.2551 REMARK 3 S21: -0.1660 S22: -0.0473 S23: 0.1518 REMARK 3 S31: -0.1886 S32: -0.0118 S33: 0.0819 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 168 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4620 12.7890 -41.1460 REMARK 3 T TENSOR REMARK 3 T11: 0.0132 T22: 0.0176 REMARK 3 T33: 0.0487 T12: 0.0041 REMARK 3 T13: 0.0121 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.2706 L22: 1.8035 REMARK 3 L33: 3.1644 L12: 0.0554 REMARK 3 L13: -0.3065 L23: 1.0300 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: -0.1147 S13: -0.1259 REMARK 3 S21: 0.1488 S22: 0.0281 S23: 0.1327 REMARK 3 S31: 0.0860 S32: 0.0333 S33: -0.0515 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 168 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0380 -16.1260 -26.0510 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.0206 REMARK 3 T33: 0.0477 T12: 0.0025 REMARK 3 T13: 0.0071 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.8858 L22: 2.7308 REMARK 3 L33: 2.4946 L12: 0.8823 REMARK 3 L13: 0.1933 L23: 0.5844 REMARK 3 S TENSOR REMARK 3 S11: -0.1249 S12: 0.1366 S13: 0.1465 REMARK 3 S21: 0.0765 S22: 0.0921 S23: 0.1027 REMARK 3 S31: -0.1805 S32: -0.0081 S33: 0.0327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 62.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22000 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP V9.2 REMARK 200 STARTING MODEL: PDB ENTRY 3HVV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG 8000, 0.1 M TRIS, 0.2 M REMARK 280 MAGNESIUM CHLORIDE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.68100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 13.94220 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -60.34225 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -13.94220 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 60.34225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 -143.30 46.95 REMARK 500 LEU A 100 173.38 -59.78 REMARK 500 ASN A 102 19.31 58.72 REMARK 500 ASN A 111 55.14 -141.59 REMARK 500 VAL B 5 -164.10 -114.08 REMARK 500 ASN B 16 -139.41 64.27 REMARK 500 ALA B 44 117.44 -39.60 REMARK 500 GLU B 98 71.66 -68.26 REMARK 500 ASN C 16 -133.81 59.51 REMARK 500 LEU C 35 16.24 83.41 REMARK 500 GLU C 98 59.28 -109.63 REMARK 500 ASN C 111 48.42 -146.31 REMARK 500 GLN D 8 -91.04 54.76 REMARK 500 ASN D 16 -145.17 65.01 REMARK 500 PRO D 157 -179.49 -67.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 169 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 171 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HVS RELATED DB: PDB REMARK 900 E. COLI TPX WILD TYPE DISULFIDE FORM AT 1.8 A RESOLUTION REMARK 900 RELATED ID: 3HVV RELATED DB: PDB REMARK 900 E. COLI TPX C65S MUTANT AT 1.75 A RESOLUTION REMARK 900 RELATED ID: 1QXH RELATED DB: PDB REMARK 900 E. COLI TPX WILD TYPE DISULFIDE FORM AT 2.2 A RESOLUTION REMARK 900 RELATED ID: 3I43 RELATED DB: PDB REMARK 900 E. COLI TPX WILD TYPE DISULFIDE FORM AT 2.8 A RESOLUTION USED TO REMARK 900 CONFIRM THE PRESENCE OF AN INTACT DISULFIDE IN 3HVS DBREF 3HVX A 2 168 UNP P0A862 TPX_ECOLI 2 168 DBREF 3HVX B 2 168 UNP P0A862 TPX_ECOLI 2 168 DBREF 3HVX C 2 168 UNP P0A862 TPX_ECOLI 2 168 DBREF 3HVX D 2 168 UNP P0A862 TPX_ECOLI 2 168 SEQADV 3HVX SER A 82 UNP P0A862 CYS 82 ENGINEERED MUTATION SEQADV 3HVX SER A 95 UNP P0A862 CYS 95 ENGINEERED MUTATION SEQADV 3HVX SER B 82 UNP P0A862 CYS 82 ENGINEERED MUTATION SEQADV 3HVX SER B 95 UNP P0A862 CYS 95 ENGINEERED MUTATION SEQADV 3HVX SER C 82 UNP P0A862 CYS 82 ENGINEERED MUTATION SEQADV 3HVX SER C 95 UNP P0A862 CYS 95 ENGINEERED MUTATION SEQADV 3HVX SER D 82 UNP P0A862 CYS 82 ENGINEERED MUTATION SEQADV 3HVX SER D 95 UNP P0A862 CYS 95 ENGINEERED MUTATION SEQRES 1 A 167 SER GLN THR VAL HIS PHE GLN GLY ASN PRO VAL THR VAL SEQRES 2 A 167 ALA ASN SER ILE PRO GLN ALA GLY SER LYS ALA GLN THR SEQRES 3 A 167 PHE THR LEU VAL ALA LYS ASP LEU SER ASP VAL THR LEU SEQRES 4 A 167 GLY GLN PHE ALA GLY LYS ARG LYS VAL LEU ASN ILE PHE SEQRES 5 A 167 PRO SER ILE ASP THR GLY VAL CYS ALA ALA SER VAL ARG SEQRES 6 A 167 LYS PHE ASN GLN LEU ALA THR GLU ILE ASP ASN THR VAL SEQRES 7 A 167 VAL LEU SER ILE SER ALA ASP LEU PRO PHE ALA GLN SER SEQRES 8 A 167 ARG PHE SER GLY ALA GLU GLY LEU ASN ASN VAL ILE THR SEQRES 9 A 167 LEU SER THR PHE ARG ASN ALA GLU PHE LEU GLN ALA TYR SEQRES 10 A 167 GLY VAL ALA ILE ALA ASP GLY PRO LEU LYS GLY LEU ALA SEQRES 11 A 167 ALA ARG ALA VAL VAL VAL ILE ASP GLU ASN ASP ASN VAL SEQRES 12 A 167 ILE PHE SER GLN LEU VAL ASP GLU ILE THR THR GLU PRO SEQRES 13 A 167 ASP TYR GLU ALA ALA LEU ALA VAL LEU LYS ALA SEQRES 1 B 167 SER GLN THR VAL HIS PHE GLN GLY ASN PRO VAL THR VAL SEQRES 2 B 167 ALA ASN SER ILE PRO GLN ALA GLY SER LYS ALA GLN THR SEQRES 3 B 167 PHE THR LEU VAL ALA LYS ASP LEU SER ASP VAL THR LEU SEQRES 4 B 167 GLY GLN PHE ALA GLY LYS ARG LYS VAL LEU ASN ILE PHE SEQRES 5 B 167 PRO SER ILE ASP THR GLY VAL CYS ALA ALA SER VAL ARG SEQRES 6 B 167 LYS PHE ASN GLN LEU ALA THR GLU ILE ASP ASN THR VAL SEQRES 7 B 167 VAL LEU SER ILE SER ALA ASP LEU PRO PHE ALA GLN SER SEQRES 8 B 167 ARG PHE SER GLY ALA GLU GLY LEU ASN ASN VAL ILE THR SEQRES 9 B 167 LEU SER THR PHE ARG ASN ALA GLU PHE LEU GLN ALA TYR SEQRES 10 B 167 GLY VAL ALA ILE ALA ASP GLY PRO LEU LYS GLY LEU ALA SEQRES 11 B 167 ALA ARG ALA VAL VAL VAL ILE ASP GLU ASN ASP ASN VAL SEQRES 12 B 167 ILE PHE SER GLN LEU VAL ASP GLU ILE THR THR GLU PRO SEQRES 13 B 167 ASP TYR GLU ALA ALA LEU ALA VAL LEU LYS ALA SEQRES 1 C 167 SER GLN THR VAL HIS PHE GLN GLY ASN PRO VAL THR VAL SEQRES 2 C 167 ALA ASN SER ILE PRO GLN ALA GLY SER LYS ALA GLN THR SEQRES 3 C 167 PHE THR LEU VAL ALA LYS ASP LEU SER ASP VAL THR LEU SEQRES 4 C 167 GLY GLN PHE ALA GLY LYS ARG LYS VAL LEU ASN ILE PHE SEQRES 5 C 167 PRO SER ILE ASP THR GLY VAL CYS ALA ALA SER VAL ARG SEQRES 6 C 167 LYS PHE ASN GLN LEU ALA THR GLU ILE ASP ASN THR VAL SEQRES 7 C 167 VAL LEU SER ILE SER ALA ASP LEU PRO PHE ALA GLN SER SEQRES 8 C 167 ARG PHE SER GLY ALA GLU GLY LEU ASN ASN VAL ILE THR SEQRES 9 C 167 LEU SER THR PHE ARG ASN ALA GLU PHE LEU GLN ALA TYR SEQRES 10 C 167 GLY VAL ALA ILE ALA ASP GLY PRO LEU LYS GLY LEU ALA SEQRES 11 C 167 ALA ARG ALA VAL VAL VAL ILE ASP GLU ASN ASP ASN VAL SEQRES 12 C 167 ILE PHE SER GLN LEU VAL ASP GLU ILE THR THR GLU PRO SEQRES 13 C 167 ASP TYR GLU ALA ALA LEU ALA VAL LEU LYS ALA SEQRES 1 D 167 SER GLN THR VAL HIS PHE GLN GLY ASN PRO VAL THR VAL SEQRES 2 D 167 ALA ASN SER ILE PRO GLN ALA GLY SER LYS ALA GLN THR SEQRES 3 D 167 PHE THR LEU VAL ALA LYS ASP LEU SER ASP VAL THR LEU SEQRES 4 D 167 GLY GLN PHE ALA GLY LYS ARG LYS VAL LEU ASN ILE PHE SEQRES 5 D 167 PRO SER ILE ASP THR GLY VAL CYS ALA ALA SER VAL ARG SEQRES 6 D 167 LYS PHE ASN GLN LEU ALA THR GLU ILE ASP ASN THR VAL SEQRES 7 D 167 VAL LEU SER ILE SER ALA ASP LEU PRO PHE ALA GLN SER SEQRES 8 D 167 ARG PHE SER GLY ALA GLU GLY LEU ASN ASN VAL ILE THR SEQRES 9 D 167 LEU SER THR PHE ARG ASN ALA GLU PHE LEU GLN ALA TYR SEQRES 10 D 167 GLY VAL ALA ILE ALA ASP GLY PRO LEU LYS GLY LEU ALA SEQRES 11 D 167 ALA ARG ALA VAL VAL VAL ILE ASP GLU ASN ASP ASN VAL SEQRES 12 D 167 ILE PHE SER GLN LEU VAL ASP GLU ILE THR THR GLU PRO SEQRES 13 D 167 ASP TYR GLU ALA ALA LEU ALA VAL LEU LYS ALA HET CL A 169 1 HET CL A 170 1 HET CL B 169 1 HET CL B 170 1 HET CL B 171 1 HET CL C 1 1 HET CL C 169 1 HET CL C 170 1 HET CL D 169 1 HET CL D 170 1 HET CL D 171 1 HETNAM CL CHLORIDE ION FORMUL 5 CL 11(CL 1-) FORMUL 16 HOH *690(H2 O) HELIX 1 1 GLY A 41 ALA A 44 5 4 HELIX 2 2 CYS A 61 ILE A 75 1 15 HELIX 3 3 LEU A 87 GLY A 96 1 10 HELIX 4 4 ALA A 112 TYR A 118 1 7 HELIX 5 5 ASP A 124 LYS A 128 5 5 HELIX 6 6 ASP A 158 LYS A 167 1 10 HELIX 7 7 GLY B 41 ALA B 44 5 4 HELIX 8 8 CYS B 61 GLU B 74 1 14 HELIX 9 9 LEU B 87 GLY B 96 1 10 HELIX 10 10 ALA B 112 TYR B 118 1 7 HELIX 11 11 ASP B 158 VAL B 165 1 8 HELIX 12 12 GLY C 41 ALA C 44 5 4 HELIX 13 13 CYS C 61 GLU C 74 1 14 HELIX 14 14 LEU C 87 GLY C 96 1 10 HELIX 15 15 ALA C 112 TYR C 118 1 7 HELIX 16 16 ASP C 158 ALA C 168 1 11 HELIX 17 17 GLY D 41 ALA D 44 5 4 HELIX 18 18 CYS D 61 GLU D 74 1 14 HELIX 19 19 LEU D 87 GLY D 96 1 10 HELIX 20 20 ALA D 112 TYR D 118 1 7 HELIX 21 21 ASP D 158 LYS D 167 1 10 SHEET 1 A 2 GLN A 3 PHE A 7 0 SHEET 2 A 2 ASN A 10 VAL A 14 -1 O VAL A 14 N GLN A 3 SHEET 1 B 2 THR A 29 VAL A 31 0 SHEET 2 B 2 ASP A 37 THR A 39 -1 O VAL A 38 N LEU A 30 SHEET 1 C 5 VAL A 103 SER A 107 0 SHEET 2 C 5 THR A 78 SER A 84 1 N SER A 82 O ILE A 104 SHEET 3 C 5 ARG A 47 ILE A 52 1 N VAL A 49 O LEU A 81 SHEET 4 C 5 ALA A 134 ILE A 138 -1 O VAL A 136 N LEU A 50 SHEET 5 C 5 VAL A 144 LEU A 149 -1 O ILE A 145 N VAL A 137 SHEET 1 D 2 GLN B 3 PHE B 7 0 SHEET 2 D 2 ASN B 10 VAL B 14 -1 O VAL B 14 N GLN B 3 SHEET 1 E 2 THR B 29 VAL B 31 0 SHEET 2 E 2 ASP B 37 THR B 39 -1 O VAL B 38 N LEU B 30 SHEET 1 F 5 VAL B 103 SER B 107 0 SHEET 2 F 5 THR B 78 SER B 84 1 N VAL B 80 O ILE B 104 SHEET 3 F 5 ARG B 47 PHE B 53 1 N PHE B 53 O ILE B 83 SHEET 4 F 5 ALA B 134 ILE B 138 -1 O VAL B 136 N LEU B 50 SHEET 5 F 5 VAL B 144 LEU B 149 -1 O PHE B 146 N VAL B 137 SHEET 1 G 2 GLN C 3 PHE C 7 0 SHEET 2 G 2 ASN C 10 VAL C 14 -1 O VAL C 14 N GLN C 3 SHEET 1 H 2 THR C 29 VAL C 31 0 SHEET 2 H 2 ASP C 37 THR C 39 -1 O VAL C 38 N LEU C 30 SHEET 1 I 5 VAL C 103 SER C 107 0 SHEET 2 I 5 THR C 78 SER C 84 1 N VAL C 80 O ILE C 104 SHEET 3 I 5 ARG C 47 PHE C 53 1 N VAL C 49 O VAL C 79 SHEET 4 I 5 ALA C 134 ILE C 138 -1 O VAL C 136 N LEU C 50 SHEET 5 I 5 VAL C 144 LEU C 149 -1 O ILE C 145 N VAL C 137 SHEET 1 J 2 GLN D 3 PHE D 7 0 SHEET 2 J 2 ASN D 10 VAL D 14 -1 O VAL D 14 N GLN D 3 SHEET 1 K 2 THR D 29 VAL D 31 0 SHEET 2 K 2 ASP D 37 THR D 39 -1 O VAL D 38 N LEU D 30 SHEET 1 L 5 VAL D 103 SER D 107 0 SHEET 2 L 5 THR D 78 SER D 84 1 N VAL D 80 O ILE D 104 SHEET 3 L 5 ARG D 47 ILE D 52 1 N VAL D 49 O LEU D 81 SHEET 4 L 5 ALA D 134 ILE D 138 -1 O VAL D 136 N LEU D 50 SHEET 5 L 5 VAL D 144 LEU D 149 -1 O PHE D 146 N VAL D 137 SSBOND 1 CYS A 61 CYS B 61 1555 1555 2.06 SSBOND 2 CYS C 61 CYS D 61 1555 1555 2.06 SITE 1 AC1 6 THR A 27 PHE A 28 THR A 39 LEU A 40 SITE 2 AC1 6 GLY A 41 HOH A 213 SITE 1 AC2 2 GLN A 148 ASP A 151 SITE 1 AC3 3 GLN B 148 LEU B 149 ASP B 151 SITE 1 AC4 3 THR B 27 LEU B 40 GLY B 41 SITE 1 AC5 2 ARG B 133 HOH B 336 SITE 1 AC6 3 THR C 27 LEU C 40 GLY C 41 SITE 1 AC7 3 ARG C 133 GLU C 156 HOH C 593 SITE 1 AC8 2 GLN C 148 ASP C 151 SITE 1 AC9 5 THR D 27 PHE D 28 THR D 39 LEU D 40 SITE 2 AC9 5 GLY D 41 SITE 1 BC1 4 GLN D 8 GLU D 152 ILE D 153 THR D 154 SITE 1 BC2 2 GLN D 148 ASP D 151 CRYST1 44.719 123.362 61.932 90.00 103.01 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022362 0.000000 0.005168 0.00000 SCALE2 0.000000 0.008106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016572 0.00000