HEADER TRANSFERASE 20-JUN-09 3HXD TITLE ENGINEERED RABGGTASE IN COMPLEX WITH A PEPTIDOMIMETIC INHIBITOR TITLE 2 (COMPOUND 9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RABGGTASE ALPHA-SUBUNIT; COMPND 5 SYNONYM: GERANYLGERANYL TRANSFERASE TYPE II SUBUNIT ALPHA, RAB COMPND 6 GERANYLGERANYLTRANSFERASE SUBUNIT ALPHA, RAB GERANYL- COMPND 7 GERANYLTRANSFERASE SUBUNIT ALPHA, RAB GG TRANSFERASE ALPHA, RAB COMPND 8 GGTASE ALPHA; COMPND 9 EC: 2.5.1.60; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETA; COMPND 14 CHAIN: B; COMPND 15 FRAGMENT: RABGGTASE BETA-SUBUNIT; COMPND 16 SYNONYM: GERANYLGERANYL TRANSFERASE TYPE II SUBUNIT BETA, GGTASE-II- COMPND 17 BETA, TYPE II PROTEIN GERANYL-GERANYLTRANSFERASE SUBUNIT BETA, RAB COMPND 18 GERANYLGERANYLTRANSFERASE SUBUNIT BETA, RAB GERANYL- COMPND 19 GERANYLTRANSFERASE SUBUNIT BETA, RAB GG TRANSFERASE BETA, RAB GGTASE COMPND 20 BETA; COMPND 21 EC: 2.5.1.60; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 CODON-PLUS RIL (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGATEV; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 12 ORGANISM_COMMON: RAT; SOURCE 13 ORGANISM_TAXID: 10116; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21 CODON-PLUS RIL (DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS PROTEIN PRENYLATION INHIBITION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.GUO,K.ALEXANDROV,H.WALDMANN,R.S.GOODY,W.BLANKENFELDT REVDAT 5 21-FEB-24 3HXD 1 REMARK SEQADV LINK REVDAT 4 26-JUL-17 3HXD 1 SOURCE REMARK REVDAT 3 17-FEB-16 3HXD 1 REMARK VERSN REVDAT 2 29-DEC-09 3HXD 1 JRNL REVDAT 1 08-SEP-09 3HXD 0 JRNL AUTH K.T.TAN,E.GUIU-ROZAS,R.S.BON,Z.GUO,C.DELON,S.WETZEL,S.ARNDT, JRNL AUTH 2 K.ALEXANDROV,H.WALDMANN,R.S.GOODY,Y.W.WU,W.BLANKENFELDT JRNL TITL DESIGN, SYNTHESIS, AND CHARACTERIZATION OF PEPTIDE-BASED RAB JRNL TITL 2 GERANYLGERANYL TRANSFERASE INHIBITORS JRNL REF J.MED.CHEM. V. 52 8025 2009 JRNL REFN ISSN 0022-2623 JRNL PMID 19894725 JRNL DOI 10.1021/JM901117D REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 48765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2588 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3557 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4969 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 339 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.20000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.943 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5252 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3518 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7150 ; 1.140 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8545 ; 4.202 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 654 ; 5.190 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;35.940 ;24.034 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 868 ;14.427 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.595 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 789 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5857 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1074 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1367 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3372 ; 0.238 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2567 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2150 ; 0.113 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 346 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.177 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.075 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.172 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.222 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.097 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.012 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3214 ; 0.985 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1295 ; 0.981 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5160 ; 1.696 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2038 ; 2.191 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1980 ; 3.167 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0316 6.6183 15.8929 REMARK 3 T TENSOR REMARK 3 T11: -0.0133 T22: -0.0154 REMARK 3 T33: -0.0116 T12: 0.0074 REMARK 3 T13: 0.0027 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.1747 L22: 0.1630 REMARK 3 L33: 0.6158 L12: 0.0215 REMARK 3 L13: 0.3050 L23: 0.1533 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.0182 S13: -0.0569 REMARK 3 S21: -0.0028 S22: -0.0070 S23: -0.0274 REMARK 3 S31: 0.0140 S32: 0.0021 S33: 0.0033 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 331 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9126 25.8111 18.0110 REMARK 3 T TENSOR REMARK 3 T11: -0.0095 T22: -0.0075 REMARK 3 T33: -0.0200 T12: 0.0118 REMARK 3 T13: 0.0015 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.2354 L22: 0.3564 REMARK 3 L33: 0.2041 L12: 0.1029 REMARK 3 L13: 0.0041 L23: 0.1987 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: -0.0162 S13: 0.0179 REMARK 3 S21: -0.0062 S22: -0.0389 S23: 0.0050 REMARK 3 S31: -0.0053 S32: -0.0349 S33: 0.0310 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 332 B 332 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5360 16.9381 23.6417 REMARK 3 T TENSOR REMARK 3 T11: -0.0001 T22: 0.0000 REMARK 3 T33: 0.0001 T12: 0.0001 REMARK 3 T13: 0.0001 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 333 B 333 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4621 43.7533 29.2667 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 331 A 476 REMARK 3 RESIDUE RANGE : B 335 B 527 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9768 16.7695 16.7496 REMARK 3 T TENSOR REMARK 3 T11: -0.0007 T22: 0.0086 REMARK 3 T33: 0.0096 T12: -0.0012 REMARK 3 T13: 0.0024 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.0219 L22: 0.0033 REMARK 3 L33: 0.0368 L12: 0.0085 REMARK 3 L13: 0.0284 L23: 0.0110 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: 0.0069 S13: 0.0077 REMARK 3 S21: -0.0016 S22: -0.0059 S23: -0.0022 REMARK 3 S31: 0.0007 S32: -0.0004 S33: 0.0064 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 334 B 334 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6236 20.8998 23.4708 REMARK 3 T TENSOR REMARK 3 T11: -0.0004 T22: 0.0003 REMARK 3 T33: -0.0003 T12: -0.0006 REMARK 3 T13: -0.0001 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 8.8251 L22: 0.4562 REMARK 3 L33: 6.6616 L12: 1.4380 REMARK 3 L13: -6.0795 L23: -0.2498 REMARK 3 S TENSOR REMARK 3 S11: 0.1232 S12: 0.0575 S13: -0.5885 REMARK 3 S21: -0.2019 S22: 0.1212 S23: -0.6066 REMARK 3 S31: 0.3411 S32: 0.2682 S33: -0.2444 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; TLS-REFINEMENT WAS USED REMARK 4 REMARK 4 3HXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51356 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.550 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 24.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30800 REMARK 200 FOR SHELL : 5.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% (W/V) PEG3350, 0.2 M CA(OAC)2, 0.1 REMARK 280 M HEPES, PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 284K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.41850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.39300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.41850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.39300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 GLY A 3 REMARK 465 ARG A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 VAL A 7 REMARK 465 LYS A 8 REMARK 465 THR A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 GLU A 12 REMARK 465 GLN A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 ALA A 16 REMARK 465 ASP A 196 REMARK 465 SER A 197 REMARK 465 GLY A 198 REMARK 465 PRO A 199 REMARK 465 GLN A 200 REMARK 465 GLY A 201 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 LYS B 33 REMARK 465 LYS B 34 REMARK 465 ASP B 35 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 19 CG CD1 CD2 REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 GLN A 23 CG CD OE1 NE2 REMARK 470 GLN A 33 CG CD OE1 NE2 REMARK 470 GLN A 37 CG CD OE1 NE2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 PHE A 175 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 194 CG CD OE1 NE2 REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 GLU B 273 CG CD OE1 OE2 REMARK 470 GLU B 274 CG CD OE1 OE2 REMARK 470 GLN B 321 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CH2 TRP B 244 CAX BD7 B 334 2.04 REMARK 500 OD1 ASN A 59 CE MET B 41 2.06 REMARK 500 OD2 ASP A 45 OG SER A 47 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 315 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 175 -146.97 -84.76 REMARK 500 ALA A 238 32.17 -77.53 REMARK 500 ASP A 285 92.43 -170.80 REMARK 500 LEU B 19 60.53 -109.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 333 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 64 O REMARK 620 2 MET B 66 O 88.4 REMARK 620 3 HOH B 415 O 99.5 66.8 REMARK 620 4 HOH B 509 O 77.9 119.0 57.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 332 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 238 OD2 REMARK 620 2 ASP B 238 OD1 51.9 REMARK 620 3 CYS B 240 SG 112.0 94.8 REMARK 620 4 CYS B 240 SG 102.5 79.6 15.2 REMARK 620 5 HIS B 290 NE2 115.3 86.5 119.5 117.3 REMARK 620 6 BD7 B 334 NBF 100.8 151.3 105.5 119.9 100.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BD7 B 334 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HXB RELATED DB: PDB REMARK 900 RELATED ID: 3HXC RELATED DB: PDB REMARK 900 RELATED ID: 3HXE RELATED DB: PDB REMARK 900 RELATED ID: 3HXF RELATED DB: PDB DBREF 3HXD A 1 237 UNP Q08602 PGTA_RAT 1 237 DBREF 3HXD A 242 330 UNP Q08602 PGTA_RAT 353 441 DBREF 3HXD B 1 331 UNP Q08603 PGTB2_RAT 1 331 SEQADV 3HXD HIS A 0 UNP Q08602 EXPRESSION TAG SEQADV 3HXD ALA A 238 UNP Q08602 LINKER SEQADV 3HXD GLY A 239 UNP Q08602 LINKER SEQADV 3HXD SER A 240 UNP Q08602 LINKER SEQADV 3HXD GLY A 241 UNP Q08602 LINKER SEQRES 1 A 331 HIS MET HIS GLY ARG LEU LYS VAL LYS THR SER GLU GLU SEQRES 2 A 331 GLN ALA GLU ALA LYS ARG LEU GLU ARG GLU GLN LYS LEU SEQRES 3 A 331 LYS LEU TYR GLN SER ALA THR GLN ALA VAL PHE GLN LYS SEQRES 4 A 331 ARG GLN ALA GLY GLU LEU ASP GLU SER VAL LEU GLU LEU SEQRES 5 A 331 THR SER GLN ILE LEU GLY ALA ASN PRO ASP PHE ALA THR SEQRES 6 A 331 LEU TRP ASN CYS ARG ARG GLU VAL LEU GLN HIS LEU GLU SEQRES 7 A 331 THR GLU LYS SER PRO GLU GLU SER ALA ALA LEU VAL LYS SEQRES 8 A 331 ALA GLU LEU GLY PHE LEU GLU SER CYS LEU ARG VAL ASN SEQRES 9 A 331 PRO LYS SER TYR GLY THR TRP HIS HIS ARG CYS TRP LEU SEQRES 10 A 331 LEU SER ARG LEU PRO GLU PRO ASN TRP ALA ARG GLU LEU SEQRES 11 A 331 GLU LEU CYS ALA ARG PHE LEU GLU ALA ASP GLU ARG ASN SEQRES 12 A 331 PHE HIS CYS TRP ASP TYR ARG ARG PHE VAL ALA ALA GLN SEQRES 13 A 331 ALA ALA VAL ALA PRO ALA GLU GLU LEU ALA PHE THR ASP SEQRES 14 A 331 SER LEU ILE THR ARG ASN PHE SER ASN TYR SER SER TRP SEQRES 15 A 331 HIS TYR ARG SER CYS LEU LEU PRO GLN LEU HIS PRO GLN SEQRES 16 A 331 PRO ASP SER GLY PRO GLN GLY ARG LEU PRO GLU ASN VAL SEQRES 17 A 331 LEU LEU LYS GLU LEU GLU LEU VAL GLN ASN ALA PHE PHE SEQRES 18 A 331 THR ASP PRO ASN ASP GLN SER ALA TRP PHE TYR HIS ARG SEQRES 19 A 331 TRP LEU LEU GLY ALA GLY SER GLY ARG CYS GLU LEU SER SEQRES 20 A 331 VAL GLU LYS SER THR VAL LEU GLN SER GLU LEU GLU SER SEQRES 21 A 331 CYS LYS GLU LEU GLN GLU LEU GLU PRO GLU ASN LYS TRP SEQRES 22 A 331 CYS LEU LEU THR ILE ILE LEU LEU MET ARG ALA LEU ASP SEQRES 23 A 331 PRO LEU LEU TYR GLU LYS GLU THR LEU GLN TYR PHE SER SEQRES 24 A 331 THR LEU LYS ALA VAL ASP PRO MET ARG ALA ALA TYR LEU SEQRES 25 A 331 ASP ASP LEU ARG SER LYS PHE LEU LEU GLU ASN SER VAL SEQRES 26 A 331 LEU LYS MET GLU TYR ALA SEQRES 1 B 331 MET GLY THR GLN GLN LYS ASP VAL THR ILE LYS SER ASP SEQRES 2 B 331 ALA PRO ASP THR LEU LEU LEU GLU LYS HIS ALA ASP TYR SEQRES 3 B 331 ILE ALA SER TYR GLY SER LYS LYS ASP ASP TYR GLU TYR SEQRES 4 B 331 CYS MET SER GLU TYR LEU ARG MET SER GLY VAL TYR TRP SEQRES 5 B 331 GLY LEU THR VAL MET ASP LEU MET GLY GLN LEU HIS ARG SEQRES 6 B 331 MET ASN LYS GLU GLU ILE LEU VAL PHE ILE LYS SER CYS SEQRES 7 B 331 GLN HIS GLU CYS GLY GLY VAL SER ALA SER ILE GLY HIS SEQRES 8 B 331 ASP PRO HIS LEU LEU TYR THR LEU SER ALA VAL GLN ILE SEQRES 9 B 331 LEU THR LEU TYR ASP SER ILE HIS VAL ILE ASN VAL ASP SEQRES 10 B 331 LYS VAL VAL ALA TYR VAL GLN SER LEU GLN LYS GLU ASP SEQRES 11 B 331 GLY SER PHE ALA GLY ASP ILE TRP GLY GLU ILE ASP THR SEQRES 12 B 331 ARG PHE SER PHE CYS ALA VAL ALA THR LEU ALA LEU LEU SEQRES 13 B 331 GLY LYS LEU ASP ALA ILE ASN VAL GLU LYS ALA ILE GLU SEQRES 14 B 331 PHE VAL LEU SER CYS MET ASN PHE ASP GLY GLY PHE GLY SEQRES 15 B 331 CYS ARG PRO GLY SER GLU SER HIS ALA GLY GLN ILE TYR SEQRES 16 B 331 CYS CYS THR GLY PHE LEU ALA ILE THR SER GLN LEU HIS SEQRES 17 B 331 GLN VAL ASN SER ASP LEU LEU GLY TRP TRP LEU CYS GLU SEQRES 18 B 331 ARG GLN LEU PRO SER GLY GLY LEU ASN GLY ARG PRO GLU SEQRES 19 B 331 LYS LEU PRO ASP VAL CYS TYR SER TRP TRP VAL LEU ALA SEQRES 20 B 331 SER LEU LYS ILE ILE GLY ARG LEU HIS TRP ILE ASP ARG SEQRES 21 B 331 GLU LYS LEU ARG SER PHE ILE LEU ALA CYS GLN ASP GLU SEQRES 22 B 331 GLU THR GLY GLY PHE ALA ASP ARG PRO GLY ASP MET VAL SEQRES 23 B 331 ASP PRO PHE HIS THR LEU PHE GLY ILE ALA GLY LEU SER SEQRES 24 B 331 LEU LEU GLY GLU GLU GLN ILE LYS PRO VAL SER PRO VAL SEQRES 25 B 331 PHE CYS MET PRO GLU GLU VAL LEU GLN ARG VAL ASN VAL SEQRES 26 B 331 GLN PRO GLU LEU VAL SER HET ZN B 332 1 HET CA B 333 1 HET BD7 B 334 46 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM BD7 N-[(BENZYLOXY)CARBONYL]-L-HISTIDYL-N-METHYL-L- HETNAM 2 BD7 PHENYLALANYL-N-HYDROXY-L-TYROSINAMIDE FORMUL 3 ZN ZN 2+ FORMUL 4 CA CA 2+ FORMUL 5 BD7 C33 H36 N6 O7 FORMUL 6 HOH *339(H2 O) HELIX 1 1 LYS A 17 GLY A 42 1 26 HELIX 2 2 ASP A 45 ASN A 59 1 15 HELIX 3 3 PHE A 62 GLU A 79 1 18 HELIX 4 4 SER A 81 ASN A 103 1 23 HELIX 5 5 SER A 106 LEU A 120 1 15 HELIX 6 6 ASN A 124 ASP A 139 1 16 HELIX 7 7 ASN A 142 ALA A 156 1 15 HELIX 8 8 ALA A 159 ASN A 174 1 16 HELIX 9 9 ASN A 177 HIS A 192 1 16 HELIX 10 10 PRO A 204 ASP A 222 1 19 HELIX 11 11 ASP A 225 ALA A 238 1 14 HELIX 12 12 GLY A 241 LEU A 245 5 5 HELIX 13 13 SER A 246 GLU A 267 1 22 HELIX 14 14 ASN A 270 ASP A 285 1 16 HELIX 15 15 TYR A 289 ASP A 304 1 16 HELIX 16 16 ARG A 307 GLU A 328 1 22 HELIX 17 17 LEU B 19 SER B 29 1 11 HELIX 18 18 ASP B 36 SER B 42 1 7 HELIX 19 19 LEU B 45 MET B 60 1 16 HELIX 20 20 GLN B 62 MET B 66 5 5 HELIX 21 21 ASN B 67 GLN B 79 1 13 HELIX 22 22 HIS B 94 TYR B 108 1 15 HELIX 23 23 SER B 110 ILE B 114 5 5 HELIX 24 24 ASN B 115 LEU B 126 1 12 HELIX 25 25 ASP B 142 GLY B 157 1 16 HELIX 26 26 LYS B 158 ILE B 162 5 5 HELIX 27 27 ASN B 163 SER B 173 1 11 HELIX 28 28 HIS B 190 THR B 204 1 15 HELIX 29 29 GLN B 206 VAL B 210 5 5 HELIX 30 30 ASN B 211 GLU B 221 1 11 HELIX 31 31 ASP B 238 ILE B 252 1 15 HELIX 32 32 ARG B 254 ILE B 258 5 5 HELIX 33 33 ASP B 259 CYS B 270 1 12 HELIX 34 34 ASP B 287 LEU B 301 1 15 HELIX 35 35 PRO B 316 ASN B 324 1 9 LINK O HIS B 64 CA CA B 333 1555 1555 2.30 LINK O MET B 66 CA CA B 333 1555 1555 2.38 LINK OD2 ASP B 238 ZN ZN B 332 1555 1555 2.23 LINK OD1 ASP B 238 ZN ZN B 332 1555 1555 2.69 LINK SG ACYS B 240 ZN ZN B 332 1555 1555 2.61 LINK SG BCYS B 240 ZN ZN B 332 1555 1555 2.26 LINK NE2 HIS B 290 ZN ZN B 332 1555 1555 2.33 LINK ZN ZN B 332 NBF BD7 B 334 1555 1555 2.06 LINK CA CA B 333 O HOH B 415 1555 1555 2.34 LINK CA CA B 333 O HOH B 509 1555 1555 2.50 SITE 1 AC1 4 ASP B 238 CYS B 240 HIS B 290 BD7 B 334 SITE 1 AC2 6 ALA A 138 HOH A 400 HIS B 64 MET B 66 SITE 2 AC2 6 HOH B 415 HOH B 509 SITE 1 AC3 16 TRP B 52 LEU B 96 ARG B 144 PHE B 147 SITE 2 AC3 16 CYS B 148 GLY B 192 GLN B 193 CYS B 196 SITE 3 AC3 16 ASP B 238 TYR B 241 TRP B 244 PHE B 289 SITE 4 AC3 16 HIS B 290 ZN B 332 HOH B 373 HOH B 380 CRYST1 66.837 90.786 115.100 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014962 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008688 0.00000