HEADER STRUCTURAL PROTEIN 21-JUN-09 3HXR TITLE NUCLEOPORIN NUP120 FROM S.CEREVISIAE (AA 1-757) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPORIN NUP120; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-757; COMPND 5 SYNONYM: NUCLEAR PORE PROTEIN NUP120; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NUP120, RAT2, YKL057C, YKL314, YKL313; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-DUET KEYWDS STRUCTURAL PROTEIN, COILED COIL, MEMBRANE, MRNA TRANSPORT, NUCLEAR KEYWDS 2 PORE COMPLEX, NUCLEUS, PHOSPHOPROTEIN, PROTEIN TRANSPORT, KEYWDS 3 TRANSLOCATION, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.C.LEKSA,S.G.BROHAWN,T.U.SCHWARTZ REVDAT 3 01-NOV-17 3HXR 1 REMARK REVDAT 2 08-SEP-09 3HXR 1 JRNL REVDAT 1 28-JUL-09 3HXR 0 JRNL AUTH N.C.LEKSA,S.G.BROHAWN,T.U.SCHWARTZ JRNL TITL THE STRUCTURE OF THE SCAFFOLD NUCLEOPORIN NUP120 REVEALS A JRNL TITL 2 NEW AND UNEXPECTED DOMAIN ARCHITECTURE. JRNL REF STRUCTURE V. 17 1082 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19576787 JRNL DOI 10.1016/J.STR.2009.06.003 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0958 - 7.0598 0.99 2612 135 0.2373 0.2827 REMARK 3 2 7.0598 - 5.6063 1.00 2611 158 0.2688 0.3254 REMARK 3 3 5.6063 - 4.8984 1.00 2585 173 0.2072 0.2673 REMARK 3 4 4.8984 - 4.4509 1.00 2655 103 0.1927 0.2288 REMARK 3 5 4.4509 - 4.1321 1.00 2671 114 0.2076 0.2940 REMARK 3 6 4.1321 - 3.8886 1.00 2622 153 0.2215 0.2938 REMARK 3 7 3.8886 - 3.6939 1.00 2593 157 0.2390 0.3283 REMARK 3 8 3.6939 - 3.5332 1.00 2626 141 0.2475 0.3188 REMARK 3 9 3.5332 - 3.3972 1.00 2615 157 0.2521 0.2762 REMARK 3 10 3.3972 - 3.2800 1.00 2606 171 0.2745 0.2875 REMARK 3 11 3.2800 - 3.1774 1.00 2649 128 0.2811 0.2789 REMARK 3 12 3.1774 - 3.0866 1.00 2628 127 0.3030 0.3372 REMARK 3 13 3.0866 - 3.0000 0.97 2534 117 0.3025 0.3435 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 73.24 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.990 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 NULL REMARK 3 ANGLE : 1.915 NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 0:163) REMARK 3 ORIGIN FOR THE GROUP (A): 119.0667 38.7468 27.5949 REMARK 3 T TENSOR REMARK 3 T11: 0.1154 T22: 0.2773 REMARK 3 T33: 0.6297 T12: -0.1200 REMARK 3 T13: 0.1054 T23: -0.2461 REMARK 3 L TENSOR REMARK 3 L11: 4.4663 L22: 4.6921 REMARK 3 L33: 3.9761 L12: -0.0022 REMARK 3 L13: 2.2504 L23: 0.7876 REMARK 3 S TENSOR REMARK 3 S11: -0.1666 S12: -0.6003 S13: 1.2980 REMARK 3 S21: 0.3150 S22: 0.1346 S23: -0.8494 REMARK 3 S31: -0.2521 S32: 0.4713 S33: 0.0020 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 164:181) REMARK 3 ORIGIN FOR THE GROUP (A): 112.0552 56.3715 29.1313 REMARK 3 T TENSOR REMARK 3 T11: 0.7591 T22: 0.4676 REMARK 3 T33: 1.8565 T12: 0.0144 REMARK 3 T13: 0.0549 T23: -0.3242 REMARK 3 L TENSOR REMARK 3 L11: 0.1677 L22: 0.4620 REMARK 3 L33: 0.6708 L12: -0.0914 REMARK 3 L13: 0.3305 L23: -0.0889 REMARK 3 S TENSOR REMARK 3 S11: -1.0640 S12: -0.0929 S13: 0.9258 REMARK 3 S21: 0.8064 S22: -1.0157 S23: -0.1579 REMARK 3 S31: -1.6631 S32: 0.2055 S33: -0.0158 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 182:503) REMARK 3 ORIGIN FOR THE GROUP (A): 98.9678 37.1062 24.2158 REMARK 3 T TENSOR REMARK 3 T11: -0.1288 T22: 0.1459 REMARK 3 T33: 0.2489 T12: 0.0091 REMARK 3 T13: 0.1715 T23: -0.1741 REMARK 3 L TENSOR REMARK 3 L11: 3.5929 L22: 3.3406 REMARK 3 L33: 2.8649 L12: 0.5339 REMARK 3 L13: 0.7081 L23: 0.5515 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: -0.3486 S13: 1.4379 REMARK 3 S21: -0.0764 S22: -0.0981 S23: 0.4900 REMARK 3 S31: -0.3270 S32: -0.4186 S33: 0.0040 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 504:730) REMARK 3 ORIGIN FOR THE GROUP (A): 96.7892 7.5526 6.3297 REMARK 3 T TENSOR REMARK 3 T11: 0.3074 T22: 0.2522 REMARK 3 T33: -0.1910 T12: 0.0463 REMARK 3 T13: -0.1192 T23: 0.1103 REMARK 3 L TENSOR REMARK 3 L11: 5.1495 L22: 5.2153 REMARK 3 L33: 2.1341 L12: 1.0011 REMARK 3 L13: 0.8435 L23: 0.6073 REMARK 3 S TENSOR REMARK 3 S11: 0.1588 S12: 0.5858 S13: -0.1971 REMARK 3 S21: -0.5664 S22: 0.0077 S23: 0.2425 REMARK 3 S31: 0.4769 S32: -0.0011 S33: -0.0137 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HXR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053712. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19288 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 0.2M KSCN, 0.1M TRIS-HCL REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 57.30000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 ASN A 30 REMARK 465 ASN A 31 REMARK 465 SER A 32 REMARK 465 ASN A 33 REMARK 465 ASN A 34 REMARK 465 ASN A 35 REMARK 465 GLY A 36 REMARK 465 LEU A 37 REMARK 465 LYS A 38 REMARK 465 GLU A 39 REMARK 465 GLY A 40 REMARK 465 ASP A 41 REMARK 465 LYS A 42 REMARK 465 SER A 43 REMARK 465 ILE A 44 REMARK 465 SER A 45 REMARK 465 THR A 46 REMARK 465 PRO A 47 REMARK 465 VAL A 48 REMARK 465 PRO A 49 REMARK 465 GLN A 50 REMARK 465 PRO A 51 REMARK 465 TYR A 52 REMARK 465 VAL A 189 REMARK 465 ASP A 190 REMARK 465 GLY A 191 REMARK 465 VAL A 192 REMARK 465 HIS A 193 REMARK 465 TYR A 194 REMARK 465 GLU A 195 REMARK 465 PRO A 196 REMARK 465 LEU A 197 REMARK 465 LEU A 198 REMARK 465 PHE A 199 REMARK 465 ASN A 200 REMARK 465 ASP A 201 REMARK 465 ASN A 202 REMARK 465 SER A 203 REMARK 465 LYS A 217 REMARK 465 SER A 218 REMARK 465 SER A 268 REMARK 465 HIS A 269 REMARK 465 PHE A 270 REMARK 465 ARG A 271 REMARK 465 LYS A 272 REMARK 465 VAL A 273 REMARK 465 GLU A 274 REMARK 465 ALA A 275 REMARK 465 LEU A 303 REMARK 465 LEU A 304 REMARK 465 VAL A 305 REMARK 465 ASP A 306 REMARK 465 SER A 307 REMARK 465 SER A 308 REMARK 465 GLY A 309 REMARK 465 ILE A 310 REMARK 465 LEU A 311 REMARK 465 THR A 312 REMARK 465 TYR A 313 REMARK 465 THR A 401 REMARK 465 GLY A 402 REMARK 465 THR A 501 REMARK 465 ASP A 502 REMARK 465 GLY A 503 REMARK 465 SER A 504 REMARK 465 GLY A 594 REMARK 465 ILE A 595 REMARK 465 PHE A 596 REMARK 465 TRP A 597 REMARK 465 LYS A 598 REMARK 465 LYS A 599 REMARK 465 ASN A 731 REMARK 465 THR A 732 REMARK 465 SER A 733 REMARK 465 HIS A 734 REMARK 465 LYS A 735 REMARK 465 ASN A 736 REMARK 465 ILE A 737 REMARK 465 ARG A 738 REMARK 465 PHE A 739 REMARK 465 PHE A 740 REMARK 465 LEU A 741 REMARK 465 GLU A 742 REMARK 465 ASN A 743 REMARK 465 VAL A 744 REMARK 465 GLU A 745 REMARK 465 CYS A 746 REMARK 465 PRO A 747 REMARK 465 PHE A 748 REMARK 465 TYR A 749 REMARK 465 LEU A 750 REMARK 465 ARG A 751 REMARK 465 HIS A 752 REMARK 465 ASN A 753 REMARK 465 GLU A 754 REMARK 465 VAL A 755 REMARK 465 GLN A 756 REMARK 465 GLU A 757 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 ARG A 210 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 232 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 338 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 374 CG CD CE NZ REMARK 470 LYS A 531 CG CD CE NZ REMARK 470 LYS A 555 CG CD CE NZ REMARK 470 LYS A 606 CG CD CE NZ REMARK 470 ARG A 669 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 691 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG MSE A 102 CG PRO A 163 1.51 REMARK 500 O THR A 302 O PHE A 315 1.85 REMARK 500 O ASP A 523 OG SER A 527 1.90 REMARK 500 CB SER A 347 OD1 ASN A 367 1.92 REMARK 500 CB ALA A 604 O GLY A 689 1.93 REMARK 500 OD2 ASP A 643 OE2 GLU A 645 1.97 REMARK 500 O LYS A 555 CG GLU A 559 1.97 REMARK 500 N ALA A 435 OD1 ASP A 439 1.98 REMARK 500 CE2 PHE A 173 O LEU A 186 1.98 REMARK 500 OD2 ASP A 403 ND2 ASN A 437 1.99 REMARK 500 O ILE A 605 CD1 PHE A 688 2.00 REMARK 500 O SER A 413 NZ LYS A 672 2.01 REMARK 500 CB VAL A 169 O PHE A 173 2.01 REMARK 500 ND2 ASN A 369 O ASN A 375 2.08 REMARK 500 N VAL A 169 O PHE A 173 2.08 REMARK 500 O LEU A 667 O GLN A 670 2.09 REMARK 500 CB LEU A 208 CG PHE A 251 2.13 REMARK 500 OD2 ASP A 247 OG1 THR A 249 2.13 REMARK 500 O LEU A 443 N LEU A 446 2.14 REMARK 500 O LEU A 293 CD1 LEU A 297 2.14 REMARK 500 OE2 GLU A 716 NH2 ARG A 725 2.17 REMARK 500 CD2 PHE A 173 O LEU A 186 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 226 CB CYS A 226 SG -0.098 REMARK 500 CYS A 241 CB CYS A 241 SG -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 74 N - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 PRO A 171 C - N - CD ANGL. DEV. = -16.0 DEGREES REMARK 500 ASP A 180 N - CA - C ANGL. DEV. = -20.6 DEGREES REMARK 500 GLY A 181 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 ASN A 240 N - CA - C ANGL. DEV. = 18.0 DEGREES REMARK 500 CYS A 241 CA - CB - SG ANGL. DEV. = -12.8 DEGREES REMARK 500 TYR A 257 CB - CA - C ANGL. DEV. = -14.8 DEGREES REMARK 500 TYR A 257 N - CA - C ANGL. DEV. = -33.2 DEGREES REMARK 500 ASP A 258 N - CA - CB ANGL. DEV. = -14.7 DEGREES REMARK 500 ASP A 258 N - CA - C ANGL. DEV. = -32.1 DEGREES REMARK 500 ASP A 370 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 TYR A 466 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 PHE A 562 N - CA - C ANGL. DEV. = -21.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 77 -4.69 84.24 REMARK 500 GLN A 104 127.79 -33.73 REMARK 500 ARG A 105 -1.54 66.18 REMARK 500 THR A 107 41.92 -98.70 REMARK 500 TYR A 156 3.41 80.65 REMARK 500 HIS A 164 -65.11 -143.54 REMARK 500 THR A 209 71.10 -164.29 REMARK 500 SER A 215 -18.24 -146.15 REMARK 500 ASP A 221 -134.58 59.86 REMARK 500 SER A 222 168.46 126.50 REMARK 500 HIS A 230 -128.51 50.34 REMARK 500 GLN A 255 -178.34 151.17 REMARK 500 MSE A 259 -132.22 54.93 REMARK 500 VAL A 260 -0.70 83.40 REMARK 500 ASP A 264 -130.00 63.05 REMARK 500 GLU A 278 78.58 -103.57 REMARK 500 ASN A 284 -132.00 52.10 REMARK 500 ASN A 318 -171.69 167.26 REMARK 500 SER A 326 -65.73 -139.99 REMARK 500 GLU A 371 -1.87 85.91 REMARK 500 PHE A 373 44.34 131.70 REMARK 500 HIS A 436 -134.26 62.85 REMARK 500 ALA A 444 -34.07 -37.94 REMARK 500 SER A 461 -21.97 -143.58 REMARK 500 PRO A 541 134.38 -37.91 REMARK 500 ILE A 605 -120.56 61.78 REMARK 500 ASP A 608 113.48 -167.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 689 15.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 3HXR A 1 757 UNP P35729 NU120_YEAST 1 757 SEQADV 3HXR GLY A -3 UNP P35729 EXPRESSION TAG SEQADV 3HXR PRO A -2 UNP P35729 EXPRESSION TAG SEQADV 3HXR GLY A -1 UNP P35729 EXPRESSION TAG SEQADV 3HXR SER A 0 UNP P35729 EXPRESSION TAG SEQRES 1 A 761 GLY PRO GLY SER MSE ALA CYS LEU SER ARG ILE ASP ALA SEQRES 2 A 761 ASN LEU LEU GLN TYR TYR GLU LYS PRO GLU PRO ASN ASN SEQRES 3 A 761 THR VAL ASP LEU TYR VAL SER ASN ASN SER ASN ASN ASN SEQRES 4 A 761 GLY LEU LYS GLU GLY ASP LYS SER ILE SER THR PRO VAL SEQRES 5 A 761 PRO GLN PRO TYR GLY SER GLU TYR SER ASN CYS LEU LEU SEQRES 6 A 761 LEU SER ASN SER GLU TYR ILE CYS TYR HIS PHE SER SER SEQRES 7 A 761 ARG SER THR LEU LEU THR PHE TYR PRO LEU SER ASP ALA SEQRES 8 A 761 TYR HIS GLY LYS THR ILE ASN ILE HIS LEU PRO ASN ALA SEQRES 9 A 761 SER MSE ASN GLN ARG TYR THR LEU THR ILE GLN GLU VAL SEQRES 10 A 761 GLU GLN GLN LEU LEU VAL ASN VAL ILE LEU LYS ASP GLY SEQRES 11 A 761 SER PHE LEU THR LEU GLN LEU PRO LEU SER PHE LEU PHE SEQRES 12 A 761 SER SER ALA ASN THR LEU ASN GLY GLU TRP PHE HIS LEU SEQRES 13 A 761 GLN ASN PRO TYR ASP PHE THR VAL ARG VAL PRO HIS PHE SEQRES 14 A 761 LEU PHE TYR VAL SER PRO GLN PHE SER VAL VAL PHE LEU SEQRES 15 A 761 GLU ASP GLY GLY LEU LEU GLY LEU LYS LYS VAL ASP GLY SEQRES 16 A 761 VAL HIS TYR GLU PRO LEU LEU PHE ASN ASP ASN SER TYR SEQRES 17 A 761 LEU LYS SER LEU THR ARG PHE PHE SER ARG SER SER LYS SEQRES 18 A 761 SER ASP TYR ASP SER VAL ILE SER CYS LYS LEU PHE HIS SEQRES 19 A 761 GLU ARG TYR LEU ILE VAL LEU THR GLN ASN CYS HIS LEU SEQRES 20 A 761 LYS ILE TRP ASP LEU THR SER PHE THR LEU ILE GLN ASP SEQRES 21 A 761 TYR ASP MSE VAL SER GLN SER ASP SER ASP PRO SER HIS SEQRES 22 A 761 PHE ARG LYS VAL GLU ALA VAL GLY GLU TYR LEU SER LEU SEQRES 23 A 761 TYR ASN ASN THR LEU VAL THR LEU LEU PRO LEU GLU ASN SEQRES 24 A 761 GLY LEU PHE GLN MSE GLY THR LEU LEU VAL ASP SER SER SEQRES 25 A 761 GLY ILE LEU THR TYR THR PHE GLN ASN ASN ILE PRO THR SEQRES 26 A 761 ASN LEU SER ALA SER ALA ILE TRP SER ILE VAL ASP LEU SEQRES 27 A 761 VAL LEU THR ARG PRO LEU GLU LEU ASN VAL GLU ALA SER SEQRES 28 A 761 TYR LEU ASN LEU ILE VAL LEU TRP LYS SER GLY THR ALA SEQRES 29 A 761 SER LYS LEU GLN ILE LEU ASN VAL ASN ASP GLU SER PHE SEQRES 30 A 761 LYS ASN TYR GLU TRP ILE GLU SER VAL ASN LYS SER LEU SEQRES 31 A 761 VAL ASP LEU GLN SER GLU HIS ASP LEU ASP ILE VAL THR SEQRES 32 A 761 LYS THR GLY ASP VAL GLU ARG GLY PHE CYS ASN LEU LYS SEQRES 33 A 761 SER ARG TYR GLY THR GLN ILE PHE GLU ARG ALA GLN GLN SEQRES 34 A 761 ILE LEU SER GLU ASN LYS ILE ILE MSE ALA HIS ASN GLU SEQRES 35 A 761 ASP GLU GLU TYR LEU ALA ASN LEU GLU THR ILE LEU ARG SEQRES 36 A 761 ASP VAL LYS THR ALA PHE ASN GLU ALA SER SER ILE THR SEQRES 37 A 761 LEU TYR GLY ASP GLU ILE ILE LEU VAL ASN CYS PHE GLN SEQRES 38 A 761 PRO TYR ASN HIS SER LEU TYR LYS LEU ASN THR THR VAL SEQRES 39 A 761 GLU ASN TRP PHE TYR ASN MSE HIS SER GLU THR ASP GLY SEQRES 40 A 761 SER GLU LEU PHE LYS TYR LEU ARG THR LEU ASN GLY PHE SEQRES 41 A 761 ALA SER THR LEU SER ASN ASP VAL LEU ARG SER ILE SER SEQRES 42 A 761 LYS LYS PHE LEU ASP ILE ILE THR GLY GLU LEU PRO ASP SEQRES 43 A 761 SER MSE THR THR VAL GLU LYS PHE THR ASP ILE PHE LYS SEQRES 44 A 761 ASN CYS LEU GLU ASN GLN PHE GLU ILE THR ASN LEU LYS SEQRES 45 A 761 ILE LEU PHE ASP GLU LEU ASN SER PHE ASP ILE PRO VAL SEQRES 46 A 761 VAL LEU ASN ASP LEU ILE ASN ASN GLN MSE LYS PRO GLY SEQRES 47 A 761 ILE PHE TRP LYS LYS ASP PHE ILE SER ALA ILE LYS PHE SEQRES 48 A 761 ASP GLY PHE THR SER ILE ILE SER LEU GLU SER LEU HIS SEQRES 49 A 761 GLN LEU LEU SER ILE HIS TYR ARG ILE THR LEU GLN VAL SEQRES 50 A 761 LEU LEU THR PHE VAL LEU PHE ASP LEU ASP THR GLU ILE SEQRES 51 A 761 PHE GLY GLN HIS ILE SER THR LEU LEU ASP LEU HIS TYR SEQRES 52 A 761 LYS GLN PHE LEU LEU LEU ASN LEU TYR ARG GLN ASP LYS SEQRES 53 A 761 CYS LEU LEU ALA GLU VAL LEU LEU LYS ASP SER SER GLU SEQRES 54 A 761 PHE SER PHE GLY VAL LYS PHE PHE ASN TYR GLY GLN LEU SEQRES 55 A 761 ILE ALA TYR ILE ASP SER LEU ASN SER ASN VAL TYR ASN SEQRES 56 A 761 ALA SER ILE THR GLU ASN SER PHE PHE MSE THR PHE PHE SEQRES 57 A 761 ARG SER TYR ILE ILE GLU ASN THR SER HIS LYS ASN ILE SEQRES 58 A 761 ARG PHE PHE LEU GLU ASN VAL GLU CYS PRO PHE TYR LEU SEQRES 59 A 761 ARG HIS ASN GLU VAL GLN GLU MODRES 3HXR MSE A 1 MET SELENOMETHIONINE MODRES 3HXR MSE A 102 MET SELENOMETHIONINE MODRES 3HXR MSE A 259 MET SELENOMETHIONINE MODRES 3HXR MSE A 300 MET SELENOMETHIONINE MODRES 3HXR MSE A 434 MET SELENOMETHIONINE MODRES 3HXR MSE A 497 MET SELENOMETHIONINE MODRES 3HXR MSE A 544 MET SELENOMETHIONINE MODRES 3HXR MSE A 591 MET SELENOMETHIONINE MODRES 3HXR MSE A 721 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 102 8 HET MSE A 259 8 HET MSE A 300 8 HET MSE A 434 8 HET MSE A 497 8 HET MSE A 544 8 HET MSE A 591 8 HET MSE A 721 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 9(C5 H11 N O2 SE) HELIX 1 1 LEU A 135 SER A 140 1 6 HELIX 2 2 ASN A 369 LYS A 374 1 6 HELIX 3 3 SER A 385 HIS A 393 1 9 HELIX 4 4 ASP A 403 TYR A 415 1 13 HELIX 5 5 GLY A 416 ASN A 430 1 15 HELIX 6 6 ASP A 439 ASN A 458 1 20 HELIX 7 7 THR A 488 ASN A 496 1 9 HELIX 8 8 GLU A 505 SER A 518 1 14 HELIX 9 9 SER A 521 GLY A 538 1 18 HELIX 10 10 THR A 545 LEU A 558 1 14 HELIX 11 11 GLU A 563 ASN A 575 1 13 HELIX 12 12 ASP A 578 ASN A 589 1 12 HELIX 13 13 GLY A 609 PHE A 640 1 32 HELIX 14 14 PHE A 647 GLN A 670 1 24 HELIX 15 15 ASP A 671 SER A 683 1 13 HELIX 16 16 ASN A 694 ASN A 711 1 18 HELIX 17 17 SER A 718 GLU A 730 1 13 SHEET 1 A 4 LEU A 4 ASN A 10 0 SHEET 2 A 4 ASN A 480 LEU A 486 -1 O LEU A 483 N ILE A 7 SHEET 3 A 4 ILE A 470 CYS A 475 -1 N VAL A 473 O SER A 482 SHEET 4 A 4 ALA A 460 TYR A 466 -1 N THR A 464 O LEU A 472 SHEET 1 B 5 THR A 23 LEU A 26 0 SHEET 2 B 5 THR A 92 HIS A 96 1 O ASN A 94 N VAL A 24 SHEET 3 B 5 LEU A 78 PRO A 83 -1 N LEU A 79 O ILE A 95 SHEET 4 B 5 TYR A 67 PHE A 72 -1 N CYS A 69 O TYR A 82 SHEET 5 B 5 TYR A 56 LEU A 61 -1 N LEU A 60 O ILE A 68 SHEET 1 C 3 LEU A 108 GLU A 112 0 SHEET 2 C 3 GLN A 116 ILE A 122 -1 O LEU A 118 N GLN A 111 SHEET 3 C 3 PHE A 128 PRO A 134 -1 O LEU A 133 N LEU A 117 SHEET 1 D 3 PHE A 165 VAL A 169 0 SHEET 2 D 3 PHE A 173 PHE A 177 -1 O PHE A 173 N VAL A 169 SHEET 3 D 3 LEU A 183 LEU A 186 -1 O LEU A 184 N VAL A 176 SHEET 1 E 3 VAL A 223 PHE A 229 0 SHEET 2 E 3 TYR A 233 THR A 238 -1 O TYR A 233 N PHE A 229 SHEET 3 E 3 LEU A 243 LYS A 244 -1 O LYS A 244 N VAL A 236 SHEET 1 F 3 LEU A 280 TYR A 283 0 SHEET 2 F 3 THR A 286 LEU A 291 -1 O THR A 286 N TYR A 283 SHEET 3 F 3 LEU A 297 GLY A 301 -1 O LEU A 297 N LEU A 291 SHEET 1 G 4 SER A 330 THR A 337 0 SHEET 2 G 4 LEU A 349 SER A 357 -1 O LEU A 354 N VAL A 332 SHEET 3 G 4 ALA A 360 VAL A 368 -1 O LYS A 362 N TRP A 355 SHEET 4 G 4 TYR A 376 ILE A 379 -1 O ILE A 379 N ILE A 365 LINK C SER A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N ALA A 2 1555 1555 1.32 LINK C SER A 101 N MSE A 102 1555 1555 1.33 LINK C MSE A 102 N ASN A 103 1555 1555 1.32 LINK C ASP A 258 N MSE A 259 1555 1555 1.33 LINK C MSE A 259 N VAL A 260 1555 1555 1.33 LINK C GLN A 299 N MSE A 300 1555 1555 1.33 LINK C MSE A 300 N GLY A 301 1555 1555 1.32 LINK C ILE A 433 N MSE A 434 1555 1555 1.33 LINK C MSE A 434 N ALA A 435 1555 1555 1.33 LINK C ASN A 496 N MSE A 497 1555 1555 1.31 LINK C MSE A 497 N HIS A 498 1555 1555 1.32 LINK C SER A 543 N MSE A 544 1555 1555 1.32 LINK C MSE A 544 N THR A 545 1555 1555 1.33 LINK C GLN A 590 N MSE A 591 1555 1555 1.31 LINK C MSE A 591 N LYS A 592 1555 1555 1.32 LINK C PHE A 720 N MSE A 721 1555 1555 1.32 LINK C MSE A 721 N THR A 722 1555 1555 1.32 CISPEP 1 PRO A 18 GLU A 19 0 0.68 CISPEP 2 SER A 74 ARG A 75 0 -15.20 CISPEP 3 ASN A 240 CYS A 241 0 5.04 CISPEP 4 LEU A 248 THR A 249 0 -7.34 CISPEP 5 MSE A 259 VAL A 260 0 -0.08 CISPEP 6 LEU A 293 GLU A 294 0 -3.22 CISPEP 7 GLY A 467 ASP A 468 0 4.96 CISPEP 8 ILE A 602 SER A 603 0 -3.19 CISPEP 9 SER A 603 ALA A 604 0 -1.04 CISPEP 10 ASP A 608 GLY A 609 0 11.35 CRYST1 114.600 153.690 52.980 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018875 0.00000