HEADER OXIDOREDUCTASE 22-JUN-09 3HY2 TITLE CRYSTAL STRUCTURE OF SULFIREDOXIN IN COMPLEX WITH PEROXIREDOXIN I AND TITLE 2 ATP:MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIREDOXIN-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THIOREDOXIN PEROXIDASE 2, THIOREDOXIN-DEPENDENT PEROXIDE COMPND 5 REDUCTASE 2, PROLIFERATION-ASSOCIATED GENE PROTEIN, PAG, NATURAL COMPND 6 KILLER CELL-ENHANCING FACTOR A, NKEF-A; COMPND 7 EC: 1.11.1.15; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: SULFIREDOXIN-1; COMPND 12 CHAIN: X, Y; COMPND 13 FRAGMENT: UNP RESIDUES 32 TO 137; COMPND 14 EC: 1.8.98.2; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRDX1, PAGA, PAGB, TDPX2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: C20ORF139, SRX, SRXN1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-PROTEIN COMPLEX, REDOX BIOLOGY, PROTEIN REPAIR, SULFUR KEYWDS 2 CHEMISTRY, ANTIOXIDANT, DISULFIDE BOND, OXIDOREDUCTASE, PEROXIDASE, KEYWDS 3 PHOSPHOPROTEIN, REDOX-ACTIVE CENTER, ATP-BINDING, MAGNESIUM, KEYWDS 4 NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.J.JONSSON,L.C.JOHNSON,W.T.LOWTHER REVDAT 5 13-OCT-21 3HY2 1 REMARK SEQADV LINK REVDAT 4 18-SEP-13 3HY2 1 REMARK VERSN REVDAT 3 08-DEC-09 3HY2 1 JRNL REVDAT 2 20-OCT-09 3HY2 1 JRNL REVDAT 1 06-OCT-09 3HY2 0 JRNL AUTH T.J.JONSSON,L.C.JOHNSON,W.T.LOWTHER JRNL TITL PROTEIN ENGINEERING OF THE QUATERNARY JRNL TITL 2 SULFIREDOXIN-PEROXIREDOXIN ENZYME-SUBSTRATE COMPLEX REVEALS JRNL TITL 3 THE MOLECULAR BASIS FOR CYSTEINE SULFINIC ACID JRNL TITL 4 PHOSPHORYLATION JRNL REF J.BIOL.CHEM. V. 284 33305 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19812042 JRNL DOI 10.1074/JBC.M109.036400 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2090 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2812 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4450 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 321 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.544 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4634 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6321 ; 1.473 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 6.153 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;34.431 ;24.229 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 735 ;15.217 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.217 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 695 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3538 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2006 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3120 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 353 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.156 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2930 ; 0.883 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4636 ; 1.439 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1944 ; 2.196 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1685 ; 3.370 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41701 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7-9.5% PEG 6000, 100 MM HEPES PH 7.6, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.66500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.92500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.92500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.66500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF PEROXIREDOXIN REMARK 300 MOLECULE IS A DECAMER I.E. FIVE DIMERS THAT FORM A RING OR DONUT- REMARK 300 LIKE STRUCTURE. THIS STRUCTURE, HOWEVER, IS AN ENGINEERED DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, X, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 VAL A 188 REMARK 465 GLN A 189 REMARK 465 LYS A 190 REMARK 465 SER A 191 REMARK 465 LYS A 192 REMARK 465 GLU A 193 REMARK 465 TYR A 194 REMARK 465 PHE A 195 REMARK 465 SER A 196 REMARK 465 LYS A 197 REMARK 465 GLN A 198 REMARK 465 LYS A 199 REMARK 465 GLY A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 HIS A 206 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 187 REMARK 465 VAL B 188 REMARK 465 GLN B 189 REMARK 465 LYS B 190 REMARK 465 SER B 191 REMARK 465 LYS B 192 REMARK 465 GLU B 193 REMARK 465 TYR B 194 REMARK 465 PHE B 195 REMARK 465 SER B 196 REMARK 465 LYS B 197 REMARK 465 GLN B 198 REMARK 465 LYS B 199 REMARK 465 GLY B 200 REMARK 465 HIS B 201 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 465 HIS B 206 REMARK 465 GLY X 28 REMARK 465 HIS X 29 REMARK 465 PRO X 30 REMARK 465 MET X 31 REMARK 465 SER X 32 REMARK 465 ILE X 33 REMARK 465 HIS X 34 REMARK 465 SER X 35 REMARK 465 GLY X 36 REMARK 465 GLY Y 28 REMARK 465 HIS Y 29 REMARK 465 PRO Y 30 REMARK 465 MET Y 31 REMARK 465 SER Y 32 REMARK 465 ILE Y 33 REMARK 465 HIS Y 34 REMARK 465 SER Y 35 REMARK 465 GLY Y 36 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA Y 39 NZ LYS Y 116 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA X 39 -72.11 -40.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 207 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 245 O REMARK 620 2 HOH A 248 O 105.0 REMARK 620 3 ATP X 1 O1G 85.6 167.0 REMARK 620 4 ATP X 1 O2B 164.0 90.0 78.8 REMARK 620 5 ATP X 1 O1A 93.7 98.0 88.6 89.7 REMARK 620 6 HOH X 140 O 90.3 84.9 87.6 85.3 174.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 207 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 275 O REMARK 620 2 HOH B 282 O 95.4 REMARK 620 3 ATP Y 2 O1G 94.2 169.7 REMARK 620 4 ATP Y 2 O2B 175.9 86.2 84.5 REMARK 620 5 ATP Y 2 O1A 91.0 92.0 91.7 85.3 REMARK 620 6 HOH Y 138 O 96.0 84.2 90.9 87.8 172.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP X 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP Y 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XW4 RELATED DB: PDB REMARK 900 RELATED ID: 1XW3 RELATED DB: PDB REMARK 900 RELATED ID: 3CYI RELATED DB: PDB REMARK 900 RELATED ID: 2RII RELATED DB: PDB DBREF 3HY2 A 1 199 UNP Q06830 PRDX1_HUMAN 1 199 DBREF 3HY2 B 1 199 UNP Q06830 PRDX1_HUMAN 1 199 DBREF 3HY2 X 32 137 UNP Q9BYN0 SRXN1_HUMAN 32 137 DBREF 3HY2 Y 32 137 UNP Q9BYN0 SRXN1_HUMAN 32 137 SEQADV 3HY2 ASP A 52 UNP Q06830 CYS 52 ENGINEERED MUTATION SEQADV 3HY2 SER A 71 UNP Q06830 CYS 71 ENGINEERED MUTATION SEQADV 3HY2 GLU A 83 UNP Q06830 CYS 83 ENGINEERED MUTATION SEQADV 3HY2 GLU A 86 UNP Q06830 ALA 86 ENGINEERED MUTATION SEQADV 3HY2 SER A 173 UNP Q06830 CYS 173 ENGINEERED MUTATION SEQADV 3HY2 CYS A 185 UNP Q06830 LYS 185 ENGINEERED MUTATION SEQADV 3HY2 GLY A 200 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS A 201 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS A 202 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS A 203 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS A 204 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS A 205 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS A 206 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 ASP B 52 UNP Q06830 CYS 52 ENGINEERED MUTATION SEQADV 3HY2 SER B 71 UNP Q06830 CYS 71 ENGINEERED MUTATION SEQADV 3HY2 GLU B 83 UNP Q06830 CYS 83 ENGINEERED MUTATION SEQADV 3HY2 GLU B 86 UNP Q06830 ALA 86 ENGINEERED MUTATION SEQADV 3HY2 SER B 173 UNP Q06830 CYS 173 ENGINEERED MUTATION SEQADV 3HY2 CYS B 185 UNP Q06830 LYS 185 ENGINEERED MUTATION SEQADV 3HY2 GLY B 200 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS B 201 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS B 202 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS B 203 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS B 204 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS B 205 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 HIS B 206 UNP Q06830 EXPRESSION TAG SEQADV 3HY2 GLY X 28 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 HIS X 29 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 PRO X 30 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 MET X 31 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 CYS X 43 UNP Q9BYN0 ASN 43 ENGINEERED MUTATION SEQADV 3HY2 ALA X 99 UNP Q9BYN0 CYS 99 ENGINEERED MUTATION SEQADV 3HY2 GLY Y 28 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 HIS Y 29 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 PRO Y 30 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 MET Y 31 UNP Q9BYN0 EXPRESSION TAG SEQADV 3HY2 CYS Y 43 UNP Q9BYN0 ASN 43 ENGINEERED MUTATION SEQADV 3HY2 ALA Y 99 UNP Q9BYN0 CYS 99 ENGINEERED MUTATION SEQRES 1 A 206 MET SER SER GLY ASN ALA LYS ILE GLY HIS PRO ALA PRO SEQRES 2 A 206 ASN PHE LYS ALA THR ALA VAL MET PRO ASP GLY GLN PHE SEQRES 3 A 206 LYS ASP ILE SER LEU SER ASP TYR LYS GLY LYS TYR VAL SEQRES 4 A 206 VAL PHE PHE PHE TYR PRO LEU ASP PHE THR PHE VAL ASP SEQRES 5 A 206 PRO THR GLU ILE ILE ALA PHE SER ASP ARG ALA GLU GLU SEQRES 6 A 206 PHE LYS LYS LEU ASN SER GLN VAL ILE GLY ALA SER VAL SEQRES 7 A 206 ASP SER HIS PHE GLU HIS LEU GLU TRP VAL ASN THR PRO SEQRES 8 A 206 LYS LYS GLN GLY GLY LEU GLY PRO MET ASN ILE PRO LEU SEQRES 9 A 206 VAL SER ASP PRO LYS ARG THR ILE ALA GLN ASP TYR GLY SEQRES 10 A 206 VAL LEU LYS ALA ASP GLU GLY ILE SER PHE ARG GLY LEU SEQRES 11 A 206 PHE ILE ILE ASP ASP LYS GLY ILE LEU ARG GLN ILE THR SEQRES 12 A 206 VAL ASN ASP LEU PRO VAL GLY ARG SER VAL ASP GLU THR SEQRES 13 A 206 LEU ARG LEU VAL GLN ALA PHE GLN PHE THR ASP LYS HIS SEQRES 14 A 206 GLY GLU VAL SER PRO ALA GLY TRP LYS PRO GLY SER ASP SEQRES 15 A 206 THR ILE CYS PRO ASP VAL GLN LYS SER LYS GLU TYR PHE SEQRES 16 A 206 SER LYS GLN LYS GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 206 MET SER SER GLY ASN ALA LYS ILE GLY HIS PRO ALA PRO SEQRES 2 B 206 ASN PHE LYS ALA THR ALA VAL MET PRO ASP GLY GLN PHE SEQRES 3 B 206 LYS ASP ILE SER LEU SER ASP TYR LYS GLY LYS TYR VAL SEQRES 4 B 206 VAL PHE PHE PHE TYR PRO LEU ASP PHE THR PHE VAL ASP SEQRES 5 B 206 PRO THR GLU ILE ILE ALA PHE SER ASP ARG ALA GLU GLU SEQRES 6 B 206 PHE LYS LYS LEU ASN SER GLN VAL ILE GLY ALA SER VAL SEQRES 7 B 206 ASP SER HIS PHE GLU HIS LEU GLU TRP VAL ASN THR PRO SEQRES 8 B 206 LYS LYS GLN GLY GLY LEU GLY PRO MET ASN ILE PRO LEU SEQRES 9 B 206 VAL SER ASP PRO LYS ARG THR ILE ALA GLN ASP TYR GLY SEQRES 10 B 206 VAL LEU LYS ALA ASP GLU GLY ILE SER PHE ARG GLY LEU SEQRES 11 B 206 PHE ILE ILE ASP ASP LYS GLY ILE LEU ARG GLN ILE THR SEQRES 12 B 206 VAL ASN ASP LEU PRO VAL GLY ARG SER VAL ASP GLU THR SEQRES 13 B 206 LEU ARG LEU VAL GLN ALA PHE GLN PHE THR ASP LYS HIS SEQRES 14 B 206 GLY GLU VAL SER PRO ALA GLY TRP LYS PRO GLY SER ASP SEQRES 15 B 206 THR ILE CYS PRO ASP VAL GLN LYS SER LYS GLU TYR PHE SEQRES 16 B 206 SER LYS GLN LYS GLY HIS HIS HIS HIS HIS HIS SEQRES 1 X 110 GLY HIS PRO MET SER ILE HIS SER GLY ARG ILE ALA ALA SEQRES 2 X 110 VAL HIS CYS VAL PRO LEU SER VAL LEU ILE ARG PRO LEU SEQRES 3 X 110 PRO SER VAL LEU ASP PRO ALA LYS VAL GLN SER LEU VAL SEQRES 4 X 110 ASP THR ILE ARG GLU ASP PRO ASP SER VAL PRO PRO ILE SEQRES 5 X 110 ASP VAL LEU TRP ILE LYS GLY ALA GLN GLY GLY ASP TYR SEQRES 6 X 110 PHE TYR SER PHE GLY GLY ALA HIS ARG TYR ALA ALA TYR SEQRES 7 X 110 GLN GLN LEU GLN ARG GLU THR ILE PRO ALA LYS LEU VAL SEQRES 8 X 110 GLN SER THR LEU SER ASP LEU ARG VAL TYR LEU GLY ALA SEQRES 9 X 110 SER THR PRO ASP LEU GLN SEQRES 1 Y 110 GLY HIS PRO MET SER ILE HIS SER GLY ARG ILE ALA ALA SEQRES 2 Y 110 VAL HIS CYS VAL PRO LEU SER VAL LEU ILE ARG PRO LEU SEQRES 3 Y 110 PRO SER VAL LEU ASP PRO ALA LYS VAL GLN SER LEU VAL SEQRES 4 Y 110 ASP THR ILE ARG GLU ASP PRO ASP SER VAL PRO PRO ILE SEQRES 5 Y 110 ASP VAL LEU TRP ILE LYS GLY ALA GLN GLY GLY ASP TYR SEQRES 6 Y 110 PHE TYR SER PHE GLY GLY ALA HIS ARG TYR ALA ALA TYR SEQRES 7 Y 110 GLN GLN LEU GLN ARG GLU THR ILE PRO ALA LYS LEU VAL SEQRES 8 Y 110 GLN SER THR LEU SER ASP LEU ARG VAL TYR LEU GLY ALA SEQRES 9 Y 110 SER THR PRO ASP LEU GLN HET MG A 207 1 HET MG B 207 1 HET ATP X 1 31 HET ATP Y 2 31 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 5 MG 2(MG 2+) FORMUL 7 ATP 2(C10 H16 N5 O13 P3) FORMUL 9 HOH *321(H2 O) HELIX 1 1 SER A 32 LYS A 35 5 4 HELIX 2 2 PRO A 53 ARG A 62 1 10 HELIX 3 3 ARG A 62 LEU A 69 1 8 HELIX 4 4 SER A 80 ASN A 89 1 10 HELIX 5 5 PRO A 91 GLY A 95 5 5 HELIX 6 6 ARG A 110 TYR A 116 1 7 HELIX 7 7 SER A 152 HIS A 169 1 18 HELIX 8 8 GLY A 180 ILE A 184 5 5 HELIX 9 9 SER B 32 LYS B 35 5 4 HELIX 10 10 PRO B 53 ARG B 62 1 10 HELIX 11 11 ARG B 62 LYS B 68 1 7 HELIX 12 12 SER B 80 ASN B 89 1 10 HELIX 13 13 PRO B 91 GLY B 95 5 5 HELIX 14 14 ARG B 110 TYR B 116 1 7 HELIX 15 15 SER B 152 HIS B 169 1 18 HELIX 16 16 GLY B 180 ILE B 184 5 5 HELIX 17 17 ASP X 58 ASP X 72 1 15 HELIX 18 18 PRO X 73 VAL X 76 5 4 HELIX 19 19 GLY X 98 LEU X 108 1 11 HELIX 20 20 THR X 121 GLY X 130 1 10 HELIX 21 21 ALA X 131 THR X 133 5 3 HELIX 22 22 ASP Y 58 ASP Y 72 1 15 HELIX 23 23 PRO Y 73 VAL Y 76 5 4 HELIX 24 24 GLY Y 98 LEU Y 108 1 11 HELIX 25 25 THR Y 121 GLY Y 130 1 10 HELIX 26 26 ALA Y 131 THR Y 133 5 3 SHEET 1 A14 PHE A 26 SER A 30 0 SHEET 2 A14 LYS A 16 VAL A 20 -1 N ALA A 19 O LYS A 27 SHEET 3 A14 LEU A 104 SER A 106 -1 O LEU A 104 N VAL A 20 SHEET 4 A14 SER A 71 SER A 77 1 N GLY A 75 O VAL A 105 SHEET 5 A14 TYR A 38 PHE A 43 1 N VAL A 40 O ILE A 74 SHEET 6 A14 ARG A 128 ILE A 133 -1 O ILE A 133 N VAL A 39 SHEET 7 A14 LEU A 139 ASN A 145 -1 O THR A 143 N LEU A 130 SHEET 8 A14 LEU B 139 ASN B 145 -1 O VAL B 144 N ILE A 142 SHEET 9 A14 ARG B 128 ILE B 133 -1 N ILE B 132 O ARG B 140 SHEET 10 A14 TYR B 38 PHE B 43 -1 N PHE B 43 O GLY B 129 SHEET 11 A14 SER B 71 SER B 77 1 O ILE B 74 N VAL B 40 SHEET 12 A14 LEU B 104 SER B 106 1 O VAL B 105 N GLY B 75 SHEET 13 A14 LYS B 16 VAL B 20 -1 N VAL B 20 O LEU B 104 SHEET 14 A14 PHE B 26 SER B 30 -1 O LYS B 27 N ALA B 19 SHEET 1 B 2 LEU B 119 LYS B 120 0 SHEET 2 B 2 ILE B 125 SER B 126 -1 O ILE B 125 N LYS B 120 SHEET 1 C 5 HIS X 42 PRO X 45 0 SHEET 2 C 5 THR X 112 SER X 120 -1 O ALA X 115 N HIS X 42 SHEET 3 C 5 ILE X 79 LYS X 85 1 N VAL X 81 O VAL X 118 SHEET 4 C 5 ASP X 91 SER X 95 -1 O TYR X 92 N ILE X 84 SHEET 5 C 5 LEU X 49 ILE X 50 1 N ILE X 50 O PHE X 93 SHEET 1 D 5 HIS Y 42 PRO Y 45 0 SHEET 2 D 5 THR Y 112 SER Y 120 -1 O ALA Y 115 N HIS Y 42 SHEET 3 D 5 ILE Y 79 LYS Y 85 1 N VAL Y 81 O LYS Y 116 SHEET 4 D 5 ASP Y 91 SER Y 95 -1 O TYR Y 92 N ILE Y 84 SHEET 5 D 5 LEU Y 49 ILE Y 50 1 N ILE Y 50 O PHE Y 93 SSBOND 1 CYS A 185 CYS Y 43 1555 1555 2.08 SSBOND 2 CYS B 185 CYS X 43 1555 1555 2.05 LINK MG MG A 207 O HOH A 245 1555 1555 2.05 LINK MG MG A 207 O HOH A 248 1555 1555 2.05 LINK MG MG A 207 O1G ATP X 1 1555 1555 2.15 LINK MG MG A 207 O2B ATP X 1 1555 1555 2.19 LINK MG MG A 207 O1A ATP X 1 1555 1555 2.02 LINK MG MG A 207 O HOH X 140 1555 1555 2.21 LINK MG MG B 207 O HOH B 275 1555 1555 2.10 LINK MG MG B 207 O HOH B 282 1555 1555 2.06 LINK MG MG B 207 O1G ATP Y 2 1555 1555 2.08 LINK MG MG B 207 O2B ATP Y 2 1555 1555 2.20 LINK MG MG B 207 O1A ATP Y 2 1555 1555 2.04 LINK MG MG B 207 O HOH Y 138 1555 1555 2.15 SITE 1 AC1 20 ASP A 52 LYS A 93 MG A 207 HOH A 245 SITE 2 AC1 20 HOH A 248 HOH A 275 LYS X 61 SER X 64 SITE 3 AC1 20 LEU X 65 THR X 68 SER X 75 PRO X 77 SITE 4 AC1 20 GLY X 98 ALA X 99 HIS X 100 ARG X 101 SITE 5 AC1 20 HOH X 140 HOH X 176 HOH X 217 HOH X 318 SITE 1 AC2 21 ASP B 52 LYS B 93 MG B 207 HOH B 275 SITE 2 AC2 21 HOH B 282 HOH B 315 LYS Y 61 SER Y 64 SITE 3 AC2 21 LEU Y 65 THR Y 68 SER Y 75 PRO Y 77 SITE 4 AC2 21 GLY Y 98 ALA Y 99 HIS Y 100 ARG Y 101 SITE 5 AC2 21 HOH Y 138 HOH Y 207 HOH Y 242 HOH Y 254 SITE 6 AC2 21 HOH Y 293 SITE 1 AC3 5 ASP A 52 HOH A 245 HOH A 248 ATP X 1 SITE 2 AC3 5 HOH X 140 SITE 1 AC4 5 ASP B 52 HOH B 275 HOH B 282 ATP Y 2 SITE 2 AC4 5 HOH Y 138 CRYST1 57.330 92.410 131.850 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017443 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007584 0.00000