data_3HYF # _entry.id 3HYF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HYF pdb_00003hyf 10.2210/pdb3hyf/pdb RCSB RCSB053735 ? ? WWPDB D_1000053735 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-11-16 4 'Structure model' 1 3 2017-08-16 5 'Structure model' 1 4 2023-09-06 6 'Structure model' 1 5 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Atomic model' 4 4 'Structure model' 'Refinement description' 5 4 'Structure model' 'Source and taxonomy' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Refinement description' 10 6 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 4 'Structure model' software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_initial_refinement_model 7 5 'Structure model' pdbx_struct_conn_angle 8 5 'Structure model' struct_conn 9 5 'Structure model' struct_ref_seq_dif 10 5 'Structure model' struct_site 11 6 'Structure model' entity_src_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.value' 14 5 'Structure model' '_struct_conn.pdbx_dist_value' 15 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 5 'Structure model' '_struct_ref_seq_dif.details' 21 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3HYF _pdbx_database_status.recvd_initial_deposition_date 2009-06-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lansdon, E.B.' 1 'Kirschberg, T.A.' 2 # _citation.id primary _citation.title ;RNase H active site inhibitors of human immunodeficiency virus type 1 reverse transcriptase: design, biochemical activity, and structural information. ; _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 52 _citation.page_first 5781 _citation.page_last 5784 _citation.year 2009 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19791799 _citation.pdbx_database_id_DOI 10.1021/jm900597q # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kirschberg, T.A.' 1 ? primary 'Balakrishnan, M.' 2 ? primary 'Squires, N.H.' 3 ? primary 'Barnes, T.' 4 ? primary 'Brendza, K.M.' 5 ? primary 'Chen, X.' 6 ? primary 'Eisenberg, E.J.' 7 ? primary 'Jin, W.' 8 ? primary 'Kutty, N.' 9 ? primary 'Leavitt, S.' 10 ? primary 'Liclican, A.' 11 ? primary 'Liu, Q.' 12 ? primary 'Liu, X.' 13 ? primary 'Mak, J.' 14 ? primary 'Perry, J.K.' 15 ? primary 'Wang, M.' 16 ? primary 'Watkins, W.J.' 17 ? primary 'Lansdon, E.B.' 18 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Reverse transcriptase/RNaseH' 16921.463 1 3.1.26.4 ? ? ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 2 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 5 non-polymer syn '2-(3,4-dichlorobenzyl)-5,6-dihydroxypyrimidine-4-carboxylic acid' 315.109 1 ? ? ? ? 6 water nat water 18.015 189 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'RNase HI, Ribonuclease H, RNase H' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGI ITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLF ; _entity_poly.pdbx_seq_one_letter_code_can ;MYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGI ITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 'ACETATE ION' ACT 4 GLYCEROL GOL 5 '2-(3,4-dichlorobenzyl)-5,6-dihydroxypyrimidine-4-carboxylic acid' ON1 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 TYR n 1 3 GLN n 1 4 LEU n 1 5 GLU n 1 6 LYS n 1 7 GLU n 1 8 PRO n 1 9 ILE n 1 10 VAL n 1 11 GLY n 1 12 ALA n 1 13 GLU n 1 14 THR n 1 15 PHE n 1 16 TYR n 1 17 VAL n 1 18 ASP n 1 19 GLY n 1 20 ALA n 1 21 ALA n 1 22 ASN n 1 23 ARG n 1 24 GLU n 1 25 THR n 1 26 LYS n 1 27 LEU n 1 28 GLY n 1 29 LYS n 1 30 ALA n 1 31 GLY n 1 32 TYR n 1 33 VAL n 1 34 THR n 1 35 ASN n 1 36 ARG n 1 37 GLY n 1 38 ARG n 1 39 GLN n 1 40 LYS n 1 41 VAL n 1 42 VAL n 1 43 THR n 1 44 LEU n 1 45 THR n 1 46 ASP n 1 47 THR n 1 48 THR n 1 49 ASN n 1 50 GLN n 1 51 LYS n 1 52 THR n 1 53 GLU n 1 54 LEU n 1 55 GLN n 1 56 ALA n 1 57 ILE n 1 58 TYR n 1 59 LEU n 1 60 ALA n 1 61 LEU n 1 62 GLN n 1 63 ASP n 1 64 SER n 1 65 GLY n 1 66 LEU n 1 67 GLU n 1 68 VAL n 1 69 ASN n 1 70 ILE n 1 71 VAL n 1 72 THR n 1 73 ASP n 1 74 SER n 1 75 GLN n 1 76 TYR n 1 77 ALA n 1 78 LEU n 1 79 GLY n 1 80 ILE n 1 81 ILE n 1 82 THR n 1 83 GLN n 1 84 TRP n 1 85 ILE n 1 86 HIS n 1 87 ASN n 1 88 TRP n 1 89 LYS n 1 90 LYS n 1 91 ARG n 1 92 GLY n 1 93 TRP n 1 94 LYS n 1 95 THR n 1 96 ALA n 1 97 ASP n 1 98 LYS n 1 99 LYS n 1 100 PRO n 1 101 VAL n 1 102 LYS n 1 103 ASN n 1 104 VAL n 1 105 ASP n 1 106 LEU n 1 107 VAL n 1 108 ASN n 1 109 GLN n 1 110 ILE n 1 111 ILE n 1 112 GLU n 1 113 GLN n 1 114 LEU n 1 115 ILE n 1 116 LYS n 1 117 LYS n 1 118 GLU n 1 119 LYS n 1 120 VAL n 1 121 TYR n 1 122 LEU n 1 123 ALA n 1 124 TRP n 1 125 VAL n 1 126 PRO n 1 127 ALA n 1 128 HIS n 1 129 LYS n 1 130 GLY n 1 131 ILE n 1 132 GLY n 1 133 GLY n 1 134 ASN n 1 135 GLU n 1 136 GLN n 1 137 VAL n 1 138 ASP n 1 139 LYS n 1 140 LEU n 1 141 VAL n 1 142 SER n 1 143 ALA n 1 144 GLY n 1 145 ILE n 1 146 ARG n 1 147 LYS n 1 148 VAL n 1 149 LEU n 1 150 PHE n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 2 81 ? ? 'pol, Reverse Transcriptase (amino acids 427-560)' ? ? ? ? ? ? 'Human immunodeficiency virus 1' 11676 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21 DE3' ? ? ? ? ? ? ? plasmid ? ? ? pET30b ? ? 1 3 sample ? 106 150 ? ? 'pol, Reverse Transcriptase (amino acids 427-560)' ? ? ? ? ? ? 'Human immunodeficiency virus 1' 11676 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21 DE3' ? ? ? ? ? ? ? plasmid ? ? ? pET30b ? ? 1 2 sample ? 82 105 ? ? 'pol, Reverse Transcriptase (amino acids 427-560)' ? ? ? ? ? ? 'Escherichia coli' 83333 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21 DE3' ? ? ? ? ? ? ? plasmid ? ? ? pET30b ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 ON1 non-polymer . '2-(3,4-dichlorobenzyl)-5,6-dihydroxypyrimidine-4-carboxylic acid' ? 'C12 H8 Cl2 N2 O4' 315.109 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 426 426 MET MET A . n A 1 2 TYR 2 427 427 TYR TYR A . n A 1 3 GLN 3 428 428 GLN GLN A . n A 1 4 LEU 4 429 429 LEU LEU A . n A 1 5 GLU 5 430 430 GLU GLU A . n A 1 6 LYS 6 431 431 LYS LYS A . n A 1 7 GLU 7 432 432 GLU GLU A . n A 1 8 PRO 8 433 433 PRO PRO A . n A 1 9 ILE 9 434 434 ILE ILE A . n A 1 10 VAL 10 435 435 VAL VAL A . n A 1 11 GLY 11 436 436 GLY GLY A . n A 1 12 ALA 12 437 437 ALA ALA A . n A 1 13 GLU 13 438 438 GLU GLU A . n A 1 14 THR 14 439 439 THR THR A . n A 1 15 PHE 15 440 440 PHE PHE A . n A 1 16 TYR 16 441 441 TYR TYR A . n A 1 17 VAL 17 442 442 VAL VAL A . n A 1 18 ASP 18 443 443 ASP ASP A . n A 1 19 GLY 19 444 444 GLY GLY A . n A 1 20 ALA 20 445 445 ALA ALA A . n A 1 21 ALA 21 446 446 ALA ALA A . n A 1 22 ASN 22 447 447 ASN ASN A . n A 1 23 ARG 23 448 448 ARG ARG A . n A 1 24 GLU 24 449 449 GLU GLU A . n A 1 25 THR 25 450 450 THR THR A . n A 1 26 LYS 26 451 451 LYS LYS A . n A 1 27 LEU 27 452 452 LEU LEU A . n A 1 28 GLY 28 453 453 GLY GLY A . n A 1 29 LYS 29 454 454 LYS LYS A . n A 1 30 ALA 30 455 455 ALA ALA A . n A 1 31 GLY 31 456 456 GLY GLY A . n A 1 32 TYR 32 457 457 TYR TYR A . n A 1 33 VAL 33 458 458 VAL VAL A . n A 1 34 THR 34 459 459 THR THR A . n A 1 35 ASN 35 460 460 ASN ASN A . n A 1 36 ARG 36 461 461 ARG ARG A . n A 1 37 GLY 37 462 462 GLY GLY A . n A 1 38 ARG 38 463 463 ARG ARG A . n A 1 39 GLN 39 464 464 GLN GLN A . n A 1 40 LYS 40 465 465 LYS LYS A . n A 1 41 VAL 41 466 466 VAL VAL A . n A 1 42 VAL 42 467 467 VAL VAL A . n A 1 43 THR 43 468 468 THR THR A . n A 1 44 LEU 44 469 469 LEU LEU A . n A 1 45 THR 45 470 470 THR THR A . n A 1 46 ASP 46 471 471 ASP ASP A . n A 1 47 THR 47 472 472 THR THR A . n A 1 48 THR 48 473 473 THR THR A . n A 1 49 ASN 49 474 474 ASN ASN A . n A 1 50 GLN 50 475 475 GLN GLN A . n A 1 51 LYS 51 476 476 LYS LYS A . n A 1 52 THR 52 477 477 THR THR A . n A 1 53 GLU 53 478 478 GLU GLU A . n A 1 54 LEU 54 479 479 LEU LEU A . n A 1 55 GLN 55 480 480 GLN GLN A . n A 1 56 ALA 56 481 481 ALA ALA A . n A 1 57 ILE 57 482 482 ILE ILE A . n A 1 58 TYR 58 483 483 TYR TYR A . n A 1 59 LEU 59 484 484 LEU LEU A . n A 1 60 ALA 60 485 485 ALA ALA A . n A 1 61 LEU 61 486 486 LEU LEU A . n A 1 62 GLN 62 487 487 GLN GLN A . n A 1 63 ASP 63 488 488 ASP ASP A . n A 1 64 SER 64 489 489 SER SER A . n A 1 65 GLY 65 490 490 GLY GLY A . n A 1 66 LEU 66 491 491 LEU LEU A . n A 1 67 GLU 67 492 492 GLU GLU A . n A 1 68 VAL 68 493 493 VAL VAL A . n A 1 69 ASN 69 494 494 ASN ASN A . n A 1 70 ILE 70 495 495 ILE ILE A . n A 1 71 VAL 71 496 496 VAL VAL A . n A 1 72 THR 72 497 497 THR THR A . n A 1 73 ASP 73 498 498 ASP ASP A . n A 1 74 SER 74 499 499 SER SER A . n A 1 75 GLN 75 500 500 GLN GLN A . n A 1 76 TYR 76 501 501 TYR TYR A . n A 1 77 ALA 77 502 502 ALA ALA A . n A 1 78 LEU 78 503 503 LEU LEU A . n A 1 79 GLY 79 504 504 GLY GLY A . n A 1 80 ILE 80 505 505 ILE ILE A . n A 1 81 ILE 81 506 506 ILE ILE A . n A 1 82 THR 82 79 79 THR THR A . n A 1 83 GLN 83 80 80 GLN GLN A . n A 1 84 TRP 84 81 81 TRP TRP A . n A 1 85 ILE 85 82 82 ILE ILE A . n A 1 86 HIS 86 83 83 HIS HIS A . n A 1 87 ASN 87 84 84 ASN ASN A . n A 1 88 TRP 88 85 85 TRP TRP A . n A 1 89 LYS 89 86 86 LYS LYS A . n A 1 90 LYS 90 87 87 LYS LYS A . n A 1 91 ARG 91 88 88 ARG ARG A . n A 1 92 GLY 92 89 89 GLY GLY A . n A 1 93 TRP 93 90 90 TRP TRP A . n A 1 94 LYS 94 91 ? ? ? A . n A 1 95 THR 95 92 ? ? ? A . n A 1 96 ALA 96 93 ? ? ? A . n A 1 97 ASP 97 94 ? ? ? A . n A 1 98 LYS 98 95 ? ? ? A . n A 1 99 LYS 99 96 ? ? ? A . n A 1 100 PRO 100 97 97 PRO PRO A . n A 1 101 VAL 101 98 98 VAL VAL A . n A 1 102 LYS 102 99 99 LYS LYS A . n A 1 103 ASN 103 100 100 ASN ASN A . n A 1 104 VAL 104 101 101 VAL VAL A . n A 1 105 ASP 105 102 102 ASP ASP A . n A 1 106 LEU 106 517 517 LEU LEU A . n A 1 107 VAL 107 518 518 VAL VAL A . n A 1 108 ASN 108 519 519 ASN ASN A . n A 1 109 GLN 109 520 520 GLN GLN A . n A 1 110 ILE 110 521 521 ILE ILE A . n A 1 111 ILE 111 522 522 ILE ILE A . n A 1 112 GLU 112 523 523 GLU GLU A . n A 1 113 GLN 113 524 524 GLN GLN A . n A 1 114 LEU 114 525 525 LEU LEU A . n A 1 115 ILE 115 526 526 ILE ILE A . n A 1 116 LYS 116 527 527 LYS LYS A . n A 1 117 LYS 117 528 528 LYS LYS A . n A 1 118 GLU 118 529 529 GLU GLU A . n A 1 119 LYS 119 530 530 LYS LYS A . n A 1 120 VAL 120 531 531 VAL VAL A . n A 1 121 TYR 121 532 532 TYR TYR A . n A 1 122 LEU 122 533 533 LEU LEU A . n A 1 123 ALA 123 534 534 ALA ALA A . n A 1 124 TRP 124 535 535 TRP TRP A . n A 1 125 VAL 125 536 536 VAL VAL A . n A 1 126 PRO 126 537 537 PRO PRO A . n A 1 127 ALA 127 538 538 ALA ALA A . n A 1 128 HIS 128 539 539 HIS HIS A . n A 1 129 LYS 129 540 540 LYS LYS A . n A 1 130 GLY 130 541 541 GLY GLY A . n A 1 131 ILE 131 542 542 ILE ILE A . n A 1 132 GLY 132 543 543 GLY GLY A . n A 1 133 GLY 133 544 544 GLY GLY A . n A 1 134 ASN 134 545 545 ASN ASN A . n A 1 135 GLU 135 546 546 GLU GLU A . n A 1 136 GLN 136 547 547 GLN GLN A . n A 1 137 VAL 137 548 548 VAL VAL A . n A 1 138 ASP 138 549 549 ASP ASP A . n A 1 139 LYS 139 550 550 LYS LYS A . n A 1 140 LEU 140 551 551 LEU LEU A . n A 1 141 VAL 141 552 552 VAL VAL A . n A 1 142 SER 142 553 553 SER SER A . n A 1 143 ALA 143 554 554 ALA ALA A . n A 1 144 GLY 144 555 555 GLY GLY A . n A 1 145 ILE 145 556 556 ILE ILE A . n A 1 146 ARG 146 557 557 ARG ARG A . n A 1 147 LYS 147 558 558 LYS LYS A . n A 1 148 VAL 148 559 559 VAL VAL A . n A 1 149 LEU 149 560 560 LEU LEU A . n A 1 150 PHE 150 561 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN 1 601 601 MN MN A . C 2 MN 1 602 602 MN MN A . D 3 ACT 1 650 650 ACT ACT A . E 4 GOL 1 698 698 GOL GOL A . F 4 GOL 1 699 699 GOL GOL A . G 5 ON1 1 701 701 ON1 ON1 A . H 6 HOH 1 1 1 HOH HOH A . H 6 HOH 2 2 2 HOH HOH A . H 6 HOH 3 3 3 HOH HOH A . H 6 HOH 4 4 4 HOH HOH A . H 6 HOH 5 5 5 HOH HOH A . H 6 HOH 6 6 6 HOH HOH A . H 6 HOH 7 7 7 HOH HOH A . H 6 HOH 8 8 8 HOH HOH A . H 6 HOH 9 9 9 HOH HOH A . H 6 HOH 10 10 10 HOH HOH A . H 6 HOH 11 11 11 HOH HOH A . H 6 HOH 12 12 12 HOH HOH A . H 6 HOH 13 13 13 HOH HOH A . H 6 HOH 14 14 14 HOH HOH A . H 6 HOH 15 15 15 HOH HOH A . H 6 HOH 16 16 16 HOH HOH A . H 6 HOH 17 17 17 HOH HOH A . H 6 HOH 18 18 18 HOH HOH A . H 6 HOH 19 19 19 HOH HOH A . H 6 HOH 20 20 20 HOH HOH A . H 6 HOH 21 21 21 HOH HOH A . H 6 HOH 22 22 22 HOH HOH A . H 6 HOH 23 23 23 HOH HOH A . H 6 HOH 24 24 24 HOH HOH A . H 6 HOH 25 25 25 HOH HOH A . H 6 HOH 26 26 26 HOH HOH A . H 6 HOH 27 27 27 HOH HOH A . H 6 HOH 28 28 28 HOH HOH A . H 6 HOH 29 29 29 HOH HOH A . H 6 HOH 30 30 30 HOH HOH A . H 6 HOH 31 31 31 HOH HOH A . H 6 HOH 32 32 32 HOH HOH A . H 6 HOH 33 33 33 HOH HOH A . H 6 HOH 34 34 34 HOH HOH A . H 6 HOH 35 35 35 HOH HOH A . H 6 HOH 36 36 36 HOH HOH A . H 6 HOH 37 37 37 HOH HOH A . H 6 HOH 38 38 38 HOH HOH A . H 6 HOH 39 39 39 HOH HOH A . H 6 HOH 40 40 40 HOH HOH A . H 6 HOH 41 41 41 HOH HOH A . H 6 HOH 42 42 42 HOH HOH A . H 6 HOH 43 43 43 HOH HOH A . H 6 HOH 44 44 44 HOH HOH A . H 6 HOH 45 45 45 HOH HOH A . H 6 HOH 46 46 46 HOH HOH A . H 6 HOH 47 47 47 HOH HOH A . H 6 HOH 48 48 48 HOH HOH A . H 6 HOH 49 49 49 HOH HOH A . H 6 HOH 50 50 50 HOH HOH A . H 6 HOH 51 51 51 HOH HOH A . H 6 HOH 52 52 52 HOH HOH A . H 6 HOH 53 53 53 HOH HOH A . H 6 HOH 54 54 54 HOH HOH A . H 6 HOH 55 55 55 HOH HOH A . H 6 HOH 56 56 56 HOH HOH A . H 6 HOH 57 57 57 HOH HOH A . H 6 HOH 58 58 58 HOH HOH A . H 6 HOH 59 59 59 HOH HOH A . H 6 HOH 60 60 60 HOH HOH A . H 6 HOH 61 61 61 HOH HOH A . H 6 HOH 62 62 62 HOH HOH A . H 6 HOH 63 63 63 HOH HOH A . H 6 HOH 64 64 64 HOH HOH A . H 6 HOH 65 65 65 HOH HOH A . H 6 HOH 66 66 66 HOH HOH A . H 6 HOH 67 67 67 HOH HOH A . H 6 HOH 68 68 68 HOH HOH A . H 6 HOH 69 69 69 HOH HOH A . H 6 HOH 70 70 70 HOH HOH A . H 6 HOH 71 71 71 HOH HOH A . H 6 HOH 72 72 72 HOH HOH A . H 6 HOH 73 73 73 HOH HOH A . H 6 HOH 74 74 74 HOH HOH A . H 6 HOH 75 75 75 HOH HOH A . H 6 HOH 76 76 76 HOH HOH A . H 6 HOH 77 77 77 HOH HOH A . H 6 HOH 78 78 78 HOH HOH A . H 6 HOH 79 103 103 HOH HOH A . H 6 HOH 80 104 104 HOH HOH A . H 6 HOH 81 105 105 HOH HOH A . H 6 HOH 82 106 106 HOH HOH A . H 6 HOH 83 107 107 HOH HOH A . H 6 HOH 84 108 108 HOH HOH A . H 6 HOH 85 109 109 HOH HOH A . H 6 HOH 86 110 110 HOH HOH A . H 6 HOH 87 111 111 HOH HOH A . H 6 HOH 88 112 112 HOH HOH A . H 6 HOH 89 113 113 HOH HOH A . H 6 HOH 90 114 114 HOH HOH A . H 6 HOH 91 115 115 HOH HOH A . H 6 HOH 92 116 116 HOH HOH A . H 6 HOH 93 117 117 HOH HOH A . H 6 HOH 94 118 118 HOH HOH A . H 6 HOH 95 119 119 HOH HOH A . H 6 HOH 96 120 120 HOH HOH A . H 6 HOH 97 121 121 HOH HOH A . H 6 HOH 98 122 122 HOH HOH A . H 6 HOH 99 123 123 HOH HOH A . H 6 HOH 100 124 124 HOH HOH A . H 6 HOH 101 125 125 HOH HOH A . H 6 HOH 102 126 126 HOH HOH A . H 6 HOH 103 127 127 HOH HOH A . H 6 HOH 104 128 128 HOH HOH A . H 6 HOH 105 129 129 HOH HOH A . H 6 HOH 106 130 130 HOH HOH A . H 6 HOH 107 131 131 HOH HOH A . H 6 HOH 108 132 132 HOH HOH A . H 6 HOH 109 133 133 HOH HOH A . H 6 HOH 110 134 134 HOH HOH A . H 6 HOH 111 135 135 HOH HOH A . H 6 HOH 112 136 136 HOH HOH A . H 6 HOH 113 137 137 HOH HOH A . H 6 HOH 114 138 138 HOH HOH A . H 6 HOH 115 139 139 HOH HOH A . H 6 HOH 116 140 140 HOH HOH A . H 6 HOH 117 141 141 HOH HOH A . H 6 HOH 118 142 142 HOH HOH A . H 6 HOH 119 143 143 HOH HOH A . H 6 HOH 120 144 144 HOH HOH A . H 6 HOH 121 145 145 HOH HOH A . H 6 HOH 122 146 146 HOH HOH A . H 6 HOH 123 147 147 HOH HOH A . H 6 HOH 124 148 148 HOH HOH A . H 6 HOH 125 149 149 HOH HOH A . H 6 HOH 126 150 150 HOH HOH A . H 6 HOH 127 151 151 HOH HOH A . H 6 HOH 128 152 152 HOH HOH A . H 6 HOH 129 153 153 HOH HOH A . H 6 HOH 130 154 154 HOH HOH A . H 6 HOH 131 155 155 HOH HOH A . H 6 HOH 132 156 156 HOH HOH A . H 6 HOH 133 157 157 HOH HOH A . H 6 HOH 134 158 158 HOH HOH A . H 6 HOH 135 159 159 HOH HOH A . H 6 HOH 136 160 160 HOH HOH A . H 6 HOH 137 161 161 HOH HOH A . H 6 HOH 138 162 162 HOH HOH A . H 6 HOH 139 163 163 HOH HOH A . H 6 HOH 140 164 164 HOH HOH A . H 6 HOH 141 165 165 HOH HOH A . H 6 HOH 142 166 166 HOH HOH A . H 6 HOH 143 167 167 HOH HOH A . H 6 HOH 144 168 168 HOH HOH A . H 6 HOH 145 169 169 HOH HOH A . H 6 HOH 146 170 170 HOH HOH A . H 6 HOH 147 171 171 HOH HOH A . H 6 HOH 148 172 172 HOH HOH A . H 6 HOH 149 173 173 HOH HOH A . H 6 HOH 150 174 174 HOH HOH A . H 6 HOH 151 175 175 HOH HOH A . H 6 HOH 152 176 176 HOH HOH A . H 6 HOH 153 177 177 HOH HOH A . H 6 HOH 154 178 178 HOH HOH A . H 6 HOH 155 179 179 HOH HOH A . H 6 HOH 156 180 180 HOH HOH A . H 6 HOH 157 181 181 HOH HOH A . H 6 HOH 158 182 182 HOH HOH A . H 6 HOH 159 183 183 HOH HOH A . H 6 HOH 160 184 184 HOH HOH A . H 6 HOH 161 185 185 HOH HOH A . H 6 HOH 162 186 186 HOH HOH A . H 6 HOH 163 187 187 HOH HOH A . H 6 HOH 164 603 603 HOH HOH A . H 6 HOH 165 604 604 HOH HOH A . H 6 HOH 166 605 79 HOH HOH A . H 6 HOH 167 606 80 HOH HOH A . H 6 HOH 168 607 81 HOH HOH A . H 6 HOH 169 608 82 HOH HOH A . H 6 HOH 170 609 83 HOH HOH A . H 6 HOH 171 610 84 HOH HOH A . H 6 HOH 172 611 85 HOH HOH A . H 6 HOH 173 612 86 HOH HOH A . H 6 HOH 174 613 87 HOH HOH A . H 6 HOH 175 614 88 HOH HOH A . H 6 HOH 176 615 89 HOH HOH A . H 6 HOH 177 616 90 HOH HOH A . H 6 HOH 178 617 91 HOH HOH A . H 6 HOH 179 618 92 HOH HOH A . H 6 HOH 180 619 93 HOH HOH A . H 6 HOH 181 620 94 HOH HOH A . H 6 HOH 182 621 95 HOH HOH A . H 6 HOH 183 622 96 HOH HOH A . H 6 HOH 184 623 97 HOH HOH A . H 6 HOH 185 624 98 HOH HOH A . H 6 HOH 186 625 99 HOH HOH A . H 6 HOH 187 626 100 HOH HOH A . H 6 HOH 188 627 101 HOH HOH A . H 6 HOH 189 628 102 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BOS 'data collection' . ? 1 AMoRE phasing . ? 2 CNX refinement 2005 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3HYF _cell.length_a 39.717 _cell.length_b 90.326 _cell.length_c 113.334 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HYF _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3HYF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.00 _exptl_crystal.density_percent_sol 59.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details ;1.0M MgSO4, 100mM sodium acetate pH 4.6, 5mM manganese chloride, 5mM TCEP, 1.5mM inhibitor, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2008-12-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal, cylindrically bent, Si(220)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3HYF _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 29.10 _reflns.d_resolution_high 1.6 _reflns.number_obs 26856 _reflns.number_all 26856 _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 37.5 _reflns.B_iso_Wilson_estimate 17.8 _reflns.pdbx_redundancy 5.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.63 _reflns_shell.percent_possible_all 76.4 _reflns_shell.Rmerge_I_obs 0.347 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1019 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3HYF _refine.ls_number_reflns_obs 22030 _refine.ls_number_reflns_all 22881 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 78272.72 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.10 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 96.1 _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.196 _refine.ls_R_factor_R_free 0.232 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 1050 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 30.3 _refine.aniso_B[1][1] 8.19 _refine.aniso_B[2][2] -6.18 _refine.aniso_B[3][3] -2.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.396692 _refine.solvent_model_param_bsol 70.5694 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB code 1HRH' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3HYF _refine_analyze.Luzzati_coordinate_error_obs 0.19 _refine_analyze.Luzzati_sigma_a_obs 0.13 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.22 _refine_analyze.Luzzati_sigma_a_free 0.10 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1135 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 189 _refine_hist.number_atoms_total 1362 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 29.10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 19.4 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.62 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 5.54 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 7.15 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 9.93 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 11.21 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_R_work 3192 _refine_ls_shell.R_factor_R_work 0.247 _refine_ls_shell.percent_reflns_obs 89.0 _refine_ls_shell.R_factor_R_free 0.218 _refine_ls_shell.R_factor_R_free_error 0.017 _refine_ls_shell.percent_reflns_R_free 5.0 _refine_ls_shell.number_reflns_R_free 168 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine.entry_id 3HYF _pdbx_refine.R_factor_all_no_cutoff 0.235 _pdbx_refine.R_factor_obs_no_cutoff 0.233 _pdbx_refine.free_R_factor_no_cutoff 0.266 _pdbx_refine.free_R_error_no_cutoff 0.008 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 4.8 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1096 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.p protein.top 'X-RAY DIFFRACTION' 2 on1.par on1.top 'X-RAY DIFFRACTION' 3 water_rep.par water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3HYF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3HYF _struct.title 'Crystal structure of HIV-1 RNase H p15 with engineered E. coli loop and active site inhibitor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HYF _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;RNase H, HIV-1, hydrolase, di-valent metal nucleic acid cleavage mechanism, di-valent metal coordination, Aspartyl protease, DNA integration, DNA recombination, Endonuclease, Multifunctional enzyme, Nuclease, Nucleotidyltransferase, Protease, RNA-directed DNA polymerase, Transferase, Magnesium, Metal-binding ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q72547_9HIV1 Q72547 1 ;YQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGII ; 427 ? 2 UNP RNH_ECOLI P0A7Y4 1 TQWIHNWKKRGWKTADKKPVKNVD 79 ? 3 UNP Q72547_9HIV1 Q72547 1 LVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLF 517 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3HYF A 2 ? 81 ? Q72547 427 ? 506 ? 427 506 2 2 3HYF A 82 ? 105 ? P0A7Y4 79 ? 102 ? 79 102 3 3 3HYF A 106 ? 150 ? Q72547 517 ? 561 ? 517 561 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3HYF _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q72547 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num 426 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 48 ? SER A 64 ? THR A 473 SER A 489 1 ? 17 HELX_P HELX_P2 2 SER A 74 ? ARG A 91 ? SER A 499 ARG A 88 1 ? 18 HELX_P HELX_P3 3 ASN A 103 ? ILE A 115 ? ASN A 100 ILE A 526 1 ? 13 HELX_P HELX_P4 4 ILE A 131 ? ALA A 143 ? ILE A 542 ALA A 554 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 18 OD1 ? ? ? 1_555 B MN . MN ? ? A ASP 443 A MN 601 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc2 metalc ? ? A ASP 18 OD2 ? ? ? 1_555 C MN . MN ? ? A ASP 443 A MN 602 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc3 metalc ? ? A GLU 53 OE1 ? ? ? 1_555 B MN . MN ? ? A GLU 478 A MN 601 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc4 metalc ? ? A ASP 73 OD2 ? ? ? 1_555 B MN . MN ? ? A ASP 498 A MN 601 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc5 metalc ? ? A ASP 138 OD2 ? ? ? 1_555 C MN . MN ? ? A ASP 549 A MN 602 1_555 ? ? ? ? ? ? ? 2.142 ? ? metalc6 metalc ? ? B MN . MN ? ? ? 1_555 G ON1 . O4 ? ? A MN 601 A ON1 701 1_555 ? ? ? ? ? ? ? 2.224 ? ? metalc7 metalc ? ? B MN . MN ? ? ? 1_555 G ON1 . O1 ? ? A MN 601 A ON1 701 1_555 ? ? ? ? ? ? ? 2.061 ? ? metalc8 metalc ? ? C MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 602 A HOH 603 1_555 ? ? ? ? ? ? ? 2.156 ? ? metalc9 metalc ? ? C MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 602 A HOH 604 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc10 metalc ? ? C MN . MN ? ? ? 1_555 G ON1 . O1 ? ? A MN 602 A ON1 701 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc11 metalc ? ? C MN . MN ? ? ? 1_555 G ON1 . O2 ? ? A MN 602 A ON1 701 1_555 ? ? ? ? ? ? ? 2.171 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 18 ? A ASP 443 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 OE1 ? A GLU 53 ? A GLU 478 ? 1_555 88.6 ? 2 OD1 ? A ASP 18 ? A ASP 443 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 OD2 ? A ASP 73 ? A ASP 498 ? 1_555 100.7 ? 3 OE1 ? A GLU 53 ? A GLU 478 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 OD2 ? A ASP 73 ? A ASP 498 ? 1_555 124.4 ? 4 OD1 ? A ASP 18 ? A ASP 443 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 O4 ? G ON1 . ? A ON1 701 ? 1_555 170.8 ? 5 OE1 ? A GLU 53 ? A GLU 478 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 O4 ? G ON1 . ? A ON1 701 ? 1_555 83.3 ? 6 OD2 ? A ASP 73 ? A ASP 498 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 O4 ? G ON1 . ? A ON1 701 ? 1_555 87.5 ? 7 OD1 ? A ASP 18 ? A ASP 443 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 O1 ? G ON1 . ? A ON1 701 ? 1_555 93.3 ? 8 OE1 ? A GLU 53 ? A GLU 478 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 O1 ? G ON1 . ? A ON1 701 ? 1_555 119.3 ? 9 OD2 ? A ASP 73 ? A ASP 498 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 O1 ? G ON1 . ? A ON1 701 ? 1_555 114.8 ? 10 O4 ? G ON1 . ? A ON1 701 ? 1_555 MN ? B MN . ? A MN 601 ? 1_555 O1 ? G ON1 . ? A ON1 701 ? 1_555 87.0 ? 11 OD2 ? A ASP 18 ? A ASP 443 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 OD2 ? A ASP 138 ? A ASP 549 ? 1_555 98.9 ? 12 OD2 ? A ASP 18 ? A ASP 443 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O ? H HOH . ? A HOH 603 ? 1_555 92.3 ? 13 OD2 ? A ASP 138 ? A ASP 549 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O ? H HOH . ? A HOH 603 ? 1_555 93.1 ? 14 OD2 ? A ASP 18 ? A ASP 443 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O ? H HOH . ? A HOH 604 ? 1_555 91.8 ? 15 OD2 ? A ASP 138 ? A ASP 549 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O ? H HOH . ? A HOH 604 ? 1_555 89.5 ? 16 O ? H HOH . ? A HOH 603 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O ? H HOH . ? A HOH 604 ? 1_555 174.8 ? 17 OD2 ? A ASP 18 ? A ASP 443 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O1 ? G ON1 . ? A ON1 701 ? 1_555 101.2 ? 18 OD2 ? A ASP 138 ? A ASP 549 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O1 ? G ON1 . ? A ON1 701 ? 1_555 159.3 ? 19 O ? H HOH . ? A HOH 603 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O1 ? G ON1 . ? A ON1 701 ? 1_555 91.3 ? 20 O ? H HOH . ? A HOH 604 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O1 ? G ON1 . ? A ON1 701 ? 1_555 84.8 ? 21 OD2 ? A ASP 18 ? A ASP 443 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O2 ? G ON1 . ? A ON1 701 ? 1_555 178.5 ? 22 OD2 ? A ASP 138 ? A ASP 549 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O2 ? G ON1 . ? A ON1 701 ? 1_555 82.0 ? 23 O ? H HOH . ? A HOH 603 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O2 ? G ON1 . ? A ON1 701 ? 1_555 88.8 ? 24 O ? H HOH . ? A HOH 604 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O2 ? G ON1 . ? A ON1 701 ? 1_555 87.0 ? 25 O1 ? G ON1 . ? A ON1 701 ? 1_555 MN ? C MN . ? A MN 602 ? 1_555 O2 ? G ON1 . ? A ON1 701 ? 1_555 77.8 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 39 ? LEU A 44 ? GLN A 464 LEU A 469 A 2 GLY A 28 ? THR A 34 ? GLY A 453 THR A 459 A 3 GLU A 13 ? ALA A 21 ? GLU A 438 ALA A 446 A 4 GLU A 67 ? THR A 72 ? GLU A 492 THR A 497 A 5 LYS A 119 ? TRP A 124 ? LYS A 530 TRP A 535 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 44 ? O LEU A 469 N GLY A 28 ? N GLY A 453 A 2 3 O VAL A 33 ? O VAL A 458 N TYR A 16 ? N TYR A 441 A 3 4 N PHE A 15 ? N PHE A 440 O VAL A 71 ? O VAL A 496 A 4 5 N ILE A 70 ? N ILE A 495 O TYR A 121 ? O TYR A 532 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 601 ? 5 'BINDING SITE FOR RESIDUE MN A 601' AC2 Software A MN 602 ? 6 'BINDING SITE FOR RESIDUE MN A 602' AC3 Software A ACT 650 ? 4 'BINDING SITE FOR RESIDUE ACT A 650' AC4 Software A GOL 698 ? 6 'BINDING SITE FOR RESIDUE GOL A 698' AC5 Software A GOL 699 ? 5 'BINDING SITE FOR RESIDUE GOL A 699' AC6 Software A ON1 701 ? 16 'BINDING SITE FOR RESIDUE ON1 A 701' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 18 ? ASP A 443 . ? 1_555 ? 2 AC1 5 GLU A 53 ? GLU A 478 . ? 1_555 ? 3 AC1 5 ASP A 73 ? ASP A 498 . ? 1_555 ? 4 AC1 5 MN C . ? MN A 602 . ? 1_555 ? 5 AC1 5 ON1 G . ? ON1 A 701 . ? 1_555 ? 6 AC2 6 ASP A 18 ? ASP A 443 . ? 1_555 ? 7 AC2 6 ASP A 138 ? ASP A 549 . ? 1_555 ? 8 AC2 6 MN B . ? MN A 601 . ? 1_555 ? 9 AC2 6 HOH H . ? HOH A 603 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH A 604 . ? 1_555 ? 11 AC2 6 ON1 G . ? ON1 A 701 . ? 1_555 ? 12 AC3 4 HOH H . ? HOH A 166 . ? 1_555 ? 13 AC3 4 TYR A 16 ? TYR A 441 . ? 1_555 ? 14 AC3 4 GLY A 133 ? GLY A 544 . ? 1_555 ? 15 AC3 4 GLN A 136 ? GLN A 547 . ? 1_555 ? 16 AC4 6 HOH H . ? HOH A 10 . ? 1_555 ? 17 AC4 6 HOH H . ? HOH A 33 . ? 1_555 ? 18 AC4 6 HOH H . ? HOH A 180 . ? 1_555 ? 19 AC4 6 HOH H . ? HOH A 184 . ? 1_555 ? 20 AC4 6 ARG A 36 ? ARG A 461 . ? 1_555 ? 21 AC4 6 GLY A 65 ? GLY A 490 . ? 1_555 ? 22 AC5 5 HOH H . ? HOH A 182 . ? 1_555 ? 23 AC5 5 ARG A 23 ? ARG A 448 . ? 8_565 ? 24 AC5 5 THR A 48 ? THR A 473 . ? 1_555 ? 25 AC5 5 ASN A 49 ? ASN A 474 . ? 1_555 ? 26 AC5 5 GLN A 50 ? GLN A 475 . ? 1_555 ? 27 AC6 16 HOH H . ? HOH A 4 . ? 1_555 ? 28 AC6 16 HOH H . ? HOH A 7 . ? 1_555 ? 29 AC6 16 HOH H . ? HOH A 15 . ? 1_555 ? 30 AC6 16 HOH H . ? HOH A 41 . ? 1_555 ? 31 AC6 16 ASP A 18 ? ASP A 443 . ? 1_555 ? 32 AC6 16 GLU A 53 ? GLU A 478 . ? 1_555 ? 33 AC6 16 ASP A 73 ? ASP A 498 . ? 1_555 ? 34 AC6 16 GLN A 75 ? GLN A 500 . ? 8_565 ? 35 AC6 16 ALA A 127 ? ALA A 538 . ? 1_555 ? 36 AC6 16 HIS A 128 ? HIS A 539 . ? 1_555 ? 37 AC6 16 ASP A 138 ? ASP A 549 . ? 1_555 ? 38 AC6 16 ARG A 146 ? ARG A 557 . ? 1_555 ? 39 AC6 16 MN B . ? MN A 601 . ? 1_555 ? 40 AC6 16 MN C . ? MN A 602 . ? 1_555 ? 41 AC6 16 HOH H . ? HOH A 603 . ? 1_555 ? 42 AC6 16 HOH H . ? HOH A 604 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 NE1 A TRP 85 ? ? 1_555 NE1 A TRP 85 ? ? 7_555 1.94 2 1 O A HOH 176 ? ? 1_555 O A HOH 176 ? ? 6_565 2.09 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 558 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -47.06 _pdbx_validate_torsion.psi -79.29 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 116 ? H HOH . 2 1 A HOH 606 ? H HOH . 3 1 A HOH 608 ? H HOH . 4 1 A HOH 609 ? H HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 91 ? A LYS 94 2 1 Y 1 A THR 92 ? A THR 95 3 1 Y 1 A ALA 93 ? A ALA 96 4 1 Y 1 A ASP 94 ? A ASP 97 5 1 Y 1 A LYS 95 ? A LYS 98 6 1 Y 1 A LYS 96 ? A LYS 99 7 1 Y 1 A PHE 561 ? A PHE 150 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 GLN N N N N 81 GLN CA C N S 82 GLN C C N N 83 GLN O O N N 84 GLN CB C N N 85 GLN CG C N N 86 GLN CD C N N 87 GLN OE1 O N N 88 GLN NE2 N N N 89 GLN OXT O N N 90 GLN H H N N 91 GLN H2 H N N 92 GLN HA H N N 93 GLN HB2 H N N 94 GLN HB3 H N N 95 GLN HG2 H N N 96 GLN HG3 H N N 97 GLN HE21 H N N 98 GLN HE22 H N N 99 GLN HXT H N N 100 GLU N N N N 101 GLU CA C N S 102 GLU C C N N 103 GLU O O N N 104 GLU CB C N N 105 GLU CG C N N 106 GLU CD C N N 107 GLU OE1 O N N 108 GLU OE2 O N N 109 GLU OXT O N N 110 GLU H H N N 111 GLU H2 H N N 112 GLU HA H N N 113 GLU HB2 H N N 114 GLU HB3 H N N 115 GLU HG2 H N N 116 GLU HG3 H N N 117 GLU HE2 H N N 118 GLU HXT H N N 119 GLY N N N N 120 GLY CA C N N 121 GLY C C N N 122 GLY O O N N 123 GLY OXT O N N 124 GLY H H N N 125 GLY H2 H N N 126 GLY HA2 H N N 127 GLY HA3 H N N 128 GLY HXT H N N 129 GOL C1 C N N 130 GOL O1 O N N 131 GOL C2 C N N 132 GOL O2 O N N 133 GOL C3 C N N 134 GOL O3 O N N 135 GOL H11 H N N 136 GOL H12 H N N 137 GOL HO1 H N N 138 GOL H2 H N N 139 GOL HO2 H N N 140 GOL H31 H N N 141 GOL H32 H N N 142 GOL HO3 H N N 143 HIS N N N N 144 HIS CA C N S 145 HIS C C N N 146 HIS O O N N 147 HIS CB C N N 148 HIS CG C Y N 149 HIS ND1 N Y N 150 HIS CD2 C Y N 151 HIS CE1 C Y N 152 HIS NE2 N Y N 153 HIS OXT O N N 154 HIS H H N N 155 HIS H2 H N N 156 HIS HA H N N 157 HIS HB2 H N N 158 HIS HB3 H N N 159 HIS HD1 H N N 160 HIS HD2 H N N 161 HIS HE1 H N N 162 HIS HE2 H N N 163 HIS HXT H N N 164 HOH O O N N 165 HOH H1 H N N 166 HOH H2 H N N 167 ILE N N N N 168 ILE CA C N S 169 ILE C C N N 170 ILE O O N N 171 ILE CB C N S 172 ILE CG1 C N N 173 ILE CG2 C N N 174 ILE CD1 C N N 175 ILE OXT O N N 176 ILE H H N N 177 ILE H2 H N N 178 ILE HA H N N 179 ILE HB H N N 180 ILE HG12 H N N 181 ILE HG13 H N N 182 ILE HG21 H N N 183 ILE HG22 H N N 184 ILE HG23 H N N 185 ILE HD11 H N N 186 ILE HD12 H N N 187 ILE HD13 H N N 188 ILE HXT H N N 189 LEU N N N N 190 LEU CA C N S 191 LEU C C N N 192 LEU O O N N 193 LEU CB C N N 194 LEU CG C N N 195 LEU CD1 C N N 196 LEU CD2 C N N 197 LEU OXT O N N 198 LEU H H N N 199 LEU H2 H N N 200 LEU HA H N N 201 LEU HB2 H N N 202 LEU HB3 H N N 203 LEU HG H N N 204 LEU HD11 H N N 205 LEU HD12 H N N 206 LEU HD13 H N N 207 LEU HD21 H N N 208 LEU HD22 H N N 209 LEU HD23 H N N 210 LEU HXT H N N 211 LYS N N N N 212 LYS CA C N S 213 LYS C C N N 214 LYS O O N N 215 LYS CB C N N 216 LYS CG C N N 217 LYS CD C N N 218 LYS CE C N N 219 LYS NZ N N N 220 LYS OXT O N N 221 LYS H H N N 222 LYS H2 H N N 223 LYS HA H N N 224 LYS HB2 H N N 225 LYS HB3 H N N 226 LYS HG2 H N N 227 LYS HG3 H N N 228 LYS HD2 H N N 229 LYS HD3 H N N 230 LYS HE2 H N N 231 LYS HE3 H N N 232 LYS HZ1 H N N 233 LYS HZ2 H N N 234 LYS HZ3 H N N 235 LYS HXT H N N 236 MET N N N N 237 MET CA C N S 238 MET C C N N 239 MET O O N N 240 MET CB C N N 241 MET CG C N N 242 MET SD S N N 243 MET CE C N N 244 MET OXT O N N 245 MET H H N N 246 MET H2 H N N 247 MET HA H N N 248 MET HB2 H N N 249 MET HB3 H N N 250 MET HG2 H N N 251 MET HG3 H N N 252 MET HE1 H N N 253 MET HE2 H N N 254 MET HE3 H N N 255 MET HXT H N N 256 MN MN MN N N 257 ON1 C1 C Y N 258 ON1 N1 N Y N 259 ON1 O1 O N N 260 ON1 CL1 CL N N 261 ON1 C2 C Y N 262 ON1 N2 N Y N 263 ON1 O2 O N N 264 ON1 CL2 CL N N 265 ON1 C3 C Y N 266 ON1 O3 O N N 267 ON1 C4 C Y N 268 ON1 O4 O N N 269 ON1 C5 C Y N 270 ON1 C6 C Y N 271 ON1 C7 C N N 272 ON1 C8 C Y N 273 ON1 C9 C Y N 274 ON1 C10 C Y N 275 ON1 C11 C Y N 276 ON1 C12 C N N 277 ON1 H1 H N N 278 ON1 HO3 H N N 279 ON1 H4 H N N 280 ON1 H5 H N N 281 ON1 H7 H N N 282 ON1 H7A H N N 283 ON1 H71 H N N 284 ON1 H8 H N N 285 PHE N N N N 286 PHE CA C N S 287 PHE C C N N 288 PHE O O N N 289 PHE CB C N N 290 PHE CG C Y N 291 PHE CD1 C Y N 292 PHE CD2 C Y N 293 PHE CE1 C Y N 294 PHE CE2 C Y N 295 PHE CZ C Y N 296 PHE OXT O N N 297 PHE H H N N 298 PHE H2 H N N 299 PHE HA H N N 300 PHE HB2 H N N 301 PHE HB3 H N N 302 PHE HD1 H N N 303 PHE HD2 H N N 304 PHE HE1 H N N 305 PHE HE2 H N N 306 PHE HZ H N N 307 PHE HXT H N N 308 PRO N N N N 309 PRO CA C N S 310 PRO C C N N 311 PRO O O N N 312 PRO CB C N N 313 PRO CG C N N 314 PRO CD C N N 315 PRO OXT O N N 316 PRO H H N N 317 PRO HA H N N 318 PRO HB2 H N N 319 PRO HB3 H N N 320 PRO HG2 H N N 321 PRO HG3 H N N 322 PRO HD2 H N N 323 PRO HD3 H N N 324 PRO HXT H N N 325 SER N N N N 326 SER CA C N S 327 SER C C N N 328 SER O O N N 329 SER CB C N N 330 SER OG O N N 331 SER OXT O N N 332 SER H H N N 333 SER H2 H N N 334 SER HA H N N 335 SER HB2 H N N 336 SER HB3 H N N 337 SER HG H N N 338 SER HXT H N N 339 THR N N N N 340 THR CA C N S 341 THR C C N N 342 THR O O N N 343 THR CB C N R 344 THR OG1 O N N 345 THR CG2 C N N 346 THR OXT O N N 347 THR H H N N 348 THR H2 H N N 349 THR HA H N N 350 THR HB H N N 351 THR HG1 H N N 352 THR HG21 H N N 353 THR HG22 H N N 354 THR HG23 H N N 355 THR HXT H N N 356 TRP N N N N 357 TRP CA C N S 358 TRP C C N N 359 TRP O O N N 360 TRP CB C N N 361 TRP CG C Y N 362 TRP CD1 C Y N 363 TRP CD2 C Y N 364 TRP NE1 N Y N 365 TRP CE2 C Y N 366 TRP CE3 C Y N 367 TRP CZ2 C Y N 368 TRP CZ3 C Y N 369 TRP CH2 C Y N 370 TRP OXT O N N 371 TRP H H N N 372 TRP H2 H N N 373 TRP HA H N N 374 TRP HB2 H N N 375 TRP HB3 H N N 376 TRP HD1 H N N 377 TRP HE1 H N N 378 TRP HE3 H N N 379 TRP HZ2 H N N 380 TRP HZ3 H N N 381 TRP HH2 H N N 382 TRP HXT H N N 383 TYR N N N N 384 TYR CA C N S 385 TYR C C N N 386 TYR O O N N 387 TYR CB C N N 388 TYR CG C Y N 389 TYR CD1 C Y N 390 TYR CD2 C Y N 391 TYR CE1 C Y N 392 TYR CE2 C Y N 393 TYR CZ C Y N 394 TYR OH O N N 395 TYR OXT O N N 396 TYR H H N N 397 TYR H2 H N N 398 TYR HA H N N 399 TYR HB2 H N N 400 TYR HB3 H N N 401 TYR HD1 H N N 402 TYR HD2 H N N 403 TYR HE1 H N N 404 TYR HE2 H N N 405 TYR HH H N N 406 TYR HXT H N N 407 VAL N N N N 408 VAL CA C N S 409 VAL C C N N 410 VAL O O N N 411 VAL CB C N N 412 VAL CG1 C N N 413 VAL CG2 C N N 414 VAL OXT O N N 415 VAL H H N N 416 VAL H2 H N N 417 VAL HA H N N 418 VAL HB H N N 419 VAL HG11 H N N 420 VAL HG12 H N N 421 VAL HG13 H N N 422 VAL HG21 H N N 423 VAL HG22 H N N 424 VAL HG23 H N N 425 VAL HXT H N N 426 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 GLN N CA sing N N 76 GLN N H sing N N 77 GLN N H2 sing N N 78 GLN CA C sing N N 79 GLN CA CB sing N N 80 GLN CA HA sing N N 81 GLN C O doub N N 82 GLN C OXT sing N N 83 GLN CB CG sing N N 84 GLN CB HB2 sing N N 85 GLN CB HB3 sing N N 86 GLN CG CD sing N N 87 GLN CG HG2 sing N N 88 GLN CG HG3 sing N N 89 GLN CD OE1 doub N N 90 GLN CD NE2 sing N N 91 GLN NE2 HE21 sing N N 92 GLN NE2 HE22 sing N N 93 GLN OXT HXT sing N N 94 GLU N CA sing N N 95 GLU N H sing N N 96 GLU N H2 sing N N 97 GLU CA C sing N N 98 GLU CA CB sing N N 99 GLU CA HA sing N N 100 GLU C O doub N N 101 GLU C OXT sing N N 102 GLU CB CG sing N N 103 GLU CB HB2 sing N N 104 GLU CB HB3 sing N N 105 GLU CG CD sing N N 106 GLU CG HG2 sing N N 107 GLU CG HG3 sing N N 108 GLU CD OE1 doub N N 109 GLU CD OE2 sing N N 110 GLU OE2 HE2 sing N N 111 GLU OXT HXT sing N N 112 GLY N CA sing N N 113 GLY N H sing N N 114 GLY N H2 sing N N 115 GLY CA C sing N N 116 GLY CA HA2 sing N N 117 GLY CA HA3 sing N N 118 GLY C O doub N N 119 GLY C OXT sing N N 120 GLY OXT HXT sing N N 121 GOL C1 O1 sing N N 122 GOL C1 C2 sing N N 123 GOL C1 H11 sing N N 124 GOL C1 H12 sing N N 125 GOL O1 HO1 sing N N 126 GOL C2 O2 sing N N 127 GOL C2 C3 sing N N 128 GOL C2 H2 sing N N 129 GOL O2 HO2 sing N N 130 GOL C3 O3 sing N N 131 GOL C3 H31 sing N N 132 GOL C3 H32 sing N N 133 GOL O3 HO3 sing N N 134 HIS N CA sing N N 135 HIS N H sing N N 136 HIS N H2 sing N N 137 HIS CA C sing N N 138 HIS CA CB sing N N 139 HIS CA HA sing N N 140 HIS C O doub N N 141 HIS C OXT sing N N 142 HIS CB CG sing N N 143 HIS CB HB2 sing N N 144 HIS CB HB3 sing N N 145 HIS CG ND1 sing Y N 146 HIS CG CD2 doub Y N 147 HIS ND1 CE1 doub Y N 148 HIS ND1 HD1 sing N N 149 HIS CD2 NE2 sing Y N 150 HIS CD2 HD2 sing N N 151 HIS CE1 NE2 sing Y N 152 HIS CE1 HE1 sing N N 153 HIS NE2 HE2 sing N N 154 HIS OXT HXT sing N N 155 HOH O H1 sing N N 156 HOH O H2 sing N N 157 ILE N CA sing N N 158 ILE N H sing N N 159 ILE N H2 sing N N 160 ILE CA C sing N N 161 ILE CA CB sing N N 162 ILE CA HA sing N N 163 ILE C O doub N N 164 ILE C OXT sing N N 165 ILE CB CG1 sing N N 166 ILE CB CG2 sing N N 167 ILE CB HB sing N N 168 ILE CG1 CD1 sing N N 169 ILE CG1 HG12 sing N N 170 ILE CG1 HG13 sing N N 171 ILE CG2 HG21 sing N N 172 ILE CG2 HG22 sing N N 173 ILE CG2 HG23 sing N N 174 ILE CD1 HD11 sing N N 175 ILE CD1 HD12 sing N N 176 ILE CD1 HD13 sing N N 177 ILE OXT HXT sing N N 178 LEU N CA sing N N 179 LEU N H sing N N 180 LEU N H2 sing N N 181 LEU CA C sing N N 182 LEU CA CB sing N N 183 LEU CA HA sing N N 184 LEU C O doub N N 185 LEU C OXT sing N N 186 LEU CB CG sing N N 187 LEU CB HB2 sing N N 188 LEU CB HB3 sing N N 189 LEU CG CD1 sing N N 190 LEU CG CD2 sing N N 191 LEU CG HG sing N N 192 LEU CD1 HD11 sing N N 193 LEU CD1 HD12 sing N N 194 LEU CD1 HD13 sing N N 195 LEU CD2 HD21 sing N N 196 LEU CD2 HD22 sing N N 197 LEU CD2 HD23 sing N N 198 LEU OXT HXT sing N N 199 LYS N CA sing N N 200 LYS N H sing N N 201 LYS N H2 sing N N 202 LYS CA C sing N N 203 LYS CA CB sing N N 204 LYS CA HA sing N N 205 LYS C O doub N N 206 LYS C OXT sing N N 207 LYS CB CG sing N N 208 LYS CB HB2 sing N N 209 LYS CB HB3 sing N N 210 LYS CG CD sing N N 211 LYS CG HG2 sing N N 212 LYS CG HG3 sing N N 213 LYS CD CE sing N N 214 LYS CD HD2 sing N N 215 LYS CD HD3 sing N N 216 LYS CE NZ sing N N 217 LYS CE HE2 sing N N 218 LYS CE HE3 sing N N 219 LYS NZ HZ1 sing N N 220 LYS NZ HZ2 sing N N 221 LYS NZ HZ3 sing N N 222 LYS OXT HXT sing N N 223 MET N CA sing N N 224 MET N H sing N N 225 MET N H2 sing N N 226 MET CA C sing N N 227 MET CA CB sing N N 228 MET CA HA sing N N 229 MET C O doub N N 230 MET C OXT sing N N 231 MET CB CG sing N N 232 MET CB HB2 sing N N 233 MET CB HB3 sing N N 234 MET CG SD sing N N 235 MET CG HG2 sing N N 236 MET CG HG3 sing N N 237 MET SD CE sing N N 238 MET CE HE1 sing N N 239 MET CE HE2 sing N N 240 MET CE HE3 sing N N 241 MET OXT HXT sing N N 242 ON1 C1 C2 sing Y N 243 ON1 C1 H1 sing N N 244 ON1 N1 C8 sing Y N 245 ON1 O1 C10 sing N N 246 ON1 C2 CL2 sing N N 247 ON1 C3 CL1 sing N N 248 ON1 C3 C2 doub Y N 249 ON1 O3 HO3 sing N N 250 ON1 C4 C3 sing Y N 251 ON1 C4 H4 sing N N 252 ON1 O4 C12 doub N N 253 ON1 C5 C4 doub Y N 254 ON1 C5 C6 sing Y N 255 ON1 C5 H5 sing N N 256 ON1 C6 C1 doub Y N 257 ON1 C7 C6 sing N N 258 ON1 C7 H7 sing N N 259 ON1 C7 H7A sing N N 260 ON1 C8 N2 doub Y N 261 ON1 C8 C7 sing N N 262 ON1 C9 N1 doub Y N 263 ON1 C9 C10 sing Y N 264 ON1 C10 C11 doub Y N 265 ON1 C11 N2 sing Y N 266 ON1 C11 O2 sing N N 267 ON1 C12 O3 sing N N 268 ON1 C12 C9 sing N N 269 ON1 O1 H71 sing N N 270 ON1 O2 H8 sing N N 271 PHE N CA sing N N 272 PHE N H sing N N 273 PHE N H2 sing N N 274 PHE CA C sing N N 275 PHE CA CB sing N N 276 PHE CA HA sing N N 277 PHE C O doub N N 278 PHE C OXT sing N N 279 PHE CB CG sing N N 280 PHE CB HB2 sing N N 281 PHE CB HB3 sing N N 282 PHE CG CD1 doub Y N 283 PHE CG CD2 sing Y N 284 PHE CD1 CE1 sing Y N 285 PHE CD1 HD1 sing N N 286 PHE CD2 CE2 doub Y N 287 PHE CD2 HD2 sing N N 288 PHE CE1 CZ doub Y N 289 PHE CE1 HE1 sing N N 290 PHE CE2 CZ sing Y N 291 PHE CE2 HE2 sing N N 292 PHE CZ HZ sing N N 293 PHE OXT HXT sing N N 294 PRO N CA sing N N 295 PRO N CD sing N N 296 PRO N H sing N N 297 PRO CA C sing N N 298 PRO CA CB sing N N 299 PRO CA HA sing N N 300 PRO C O doub N N 301 PRO C OXT sing N N 302 PRO CB CG sing N N 303 PRO CB HB2 sing N N 304 PRO CB HB3 sing N N 305 PRO CG CD sing N N 306 PRO CG HG2 sing N N 307 PRO CG HG3 sing N N 308 PRO CD HD2 sing N N 309 PRO CD HD3 sing N N 310 PRO OXT HXT sing N N 311 SER N CA sing N N 312 SER N H sing N N 313 SER N H2 sing N N 314 SER CA C sing N N 315 SER CA CB sing N N 316 SER CA HA sing N N 317 SER C O doub N N 318 SER C OXT sing N N 319 SER CB OG sing N N 320 SER CB HB2 sing N N 321 SER CB HB3 sing N N 322 SER OG HG sing N N 323 SER OXT HXT sing N N 324 THR N CA sing N N 325 THR N H sing N N 326 THR N H2 sing N N 327 THR CA C sing N N 328 THR CA CB sing N N 329 THR CA HA sing N N 330 THR C O doub N N 331 THR C OXT sing N N 332 THR CB OG1 sing N N 333 THR CB CG2 sing N N 334 THR CB HB sing N N 335 THR OG1 HG1 sing N N 336 THR CG2 HG21 sing N N 337 THR CG2 HG22 sing N N 338 THR CG2 HG23 sing N N 339 THR OXT HXT sing N N 340 TRP N CA sing N N 341 TRP N H sing N N 342 TRP N H2 sing N N 343 TRP CA C sing N N 344 TRP CA CB sing N N 345 TRP CA HA sing N N 346 TRP C O doub N N 347 TRP C OXT sing N N 348 TRP CB CG sing N N 349 TRP CB HB2 sing N N 350 TRP CB HB3 sing N N 351 TRP CG CD1 doub Y N 352 TRP CG CD2 sing Y N 353 TRP CD1 NE1 sing Y N 354 TRP CD1 HD1 sing N N 355 TRP CD2 CE2 doub Y N 356 TRP CD2 CE3 sing Y N 357 TRP NE1 CE2 sing Y N 358 TRP NE1 HE1 sing N N 359 TRP CE2 CZ2 sing Y N 360 TRP CE3 CZ3 doub Y N 361 TRP CE3 HE3 sing N N 362 TRP CZ2 CH2 doub Y N 363 TRP CZ2 HZ2 sing N N 364 TRP CZ3 CH2 sing Y N 365 TRP CZ3 HZ3 sing N N 366 TRP CH2 HH2 sing N N 367 TRP OXT HXT sing N N 368 TYR N CA sing N N 369 TYR N H sing N N 370 TYR N H2 sing N N 371 TYR CA C sing N N 372 TYR CA CB sing N N 373 TYR CA HA sing N N 374 TYR C O doub N N 375 TYR C OXT sing N N 376 TYR CB CG sing N N 377 TYR CB HB2 sing N N 378 TYR CB HB3 sing N N 379 TYR CG CD1 doub Y N 380 TYR CG CD2 sing Y N 381 TYR CD1 CE1 sing Y N 382 TYR CD1 HD1 sing N N 383 TYR CD2 CE2 doub Y N 384 TYR CD2 HD2 sing N N 385 TYR CE1 CZ doub Y N 386 TYR CE1 HE1 sing N N 387 TYR CE2 CZ sing Y N 388 TYR CE2 HE2 sing N N 389 TYR CZ OH sing N N 390 TYR OH HH sing N N 391 TYR OXT HXT sing N N 392 VAL N CA sing N N 393 VAL N H sing N N 394 VAL N H2 sing N N 395 VAL CA C sing N N 396 VAL CA CB sing N N 397 VAL CA HA sing N N 398 VAL C O doub N N 399 VAL C OXT sing N N 400 VAL CB CG1 sing N N 401 VAL CB CG2 sing N N 402 VAL CB HB sing N N 403 VAL CG1 HG11 sing N N 404 VAL CG1 HG12 sing N N 405 VAL CG1 HG13 sing N N 406 VAL CG2 HG21 sing N N 407 VAL CG2 HG22 sing N N 408 VAL CG2 HG23 sing N N 409 VAL OXT HXT sing N N 410 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1HRH _pdbx_initial_refinement_model.details 'PDB code 1HRH' # _atom_sites.entry_id 3HYF _atom_sites.fract_transf_matrix[1][1] 0.025178 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011071 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008823 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MN N O S # loop_