HEADER TRANSCRIPTION REGULATOR 22-JUN-09 3HYI TITLE CRYSTAL STRUCTURE OF FULL-LENGTH DUF199/WHIA FROM THERMATOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DUF199/WHIA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM1708, TM_1708; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS LAGLIDADG, HOMING ENDONUCLEASE, HELIX-TURN-HELIX, HTH, TRANSCRIPTION KEYWDS 2 REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR B.K.KAISER,M.C.CLIFTON,B.W.SHEN,B.L.STODDARD REVDAT 5 21-FEB-24 3HYI 1 REMARK REVDAT 4 01-NOV-17 3HYI 1 REMARK REVDAT 3 13-JUL-11 3HYI 1 VERSN REVDAT 2 10-NOV-09 3HYI 1 JRNL REVDAT 1 01-SEP-09 3HYI 0 JRNL AUTH B.K.KAISER,M.C.CLIFTON,B.W.SHEN,B.L.STODDARD JRNL TITL THE STRUCTURE OF A BACTERIAL DUF199/WHIA PROTEIN: JRNL TITL 2 DOMESTICATION OF AN INVASIVE ENDONUCLEASE JRNL REF STRUCTURE V. 17 1368 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19836336 JRNL DOI 10.1016/J.STR.2009.08.008 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 12702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 666 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 883 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2175 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.430 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.279 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.213 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.218 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2234 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1508 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3018 ; 0.868 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3687 ; 0.767 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 5.933 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;36.638 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;14.767 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.323 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 362 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2464 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 454 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 475 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1464 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1096 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1205 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 63 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.241 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.129 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1420 ; 0.192 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 577 ; 0.025 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2284 ; 0.358 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 821 ; 0.466 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 731 ; 0.796 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4712 2.6220 -4.1095 REMARK 3 T TENSOR REMARK 3 T11: 0.0723 T22: 0.0389 REMARK 3 T33: 0.0186 T12: -0.0226 REMARK 3 T13: 0.0146 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 3.0153 L22: 3.5815 REMARK 3 L33: 3.1587 L12: -0.0737 REMARK 3 L13: -0.4827 L23: -0.1233 REMARK 3 S TENSOR REMARK 3 S11: 0.1229 S12: -0.1967 S13: 0.2366 REMARK 3 S21: 0.0379 S22: -0.0003 S23: -0.1975 REMARK 3 S31: -0.2376 S32: 0.2061 S33: -0.1226 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7997 -15.2265 -2.7482 REMARK 3 T TENSOR REMARK 3 T11: 0.0749 T22: -0.0037 REMARK 3 T33: 0.1495 T12: 0.0207 REMARK 3 T13: -0.0403 T23: 0.0521 REMARK 3 L TENSOR REMARK 3 L11: 6.6713 L22: 5.8565 REMARK 3 L33: 5.8363 L12: -3.5353 REMARK 3 L13: -0.7316 L23: 1.1701 REMARK 3 S TENSOR REMARK 3 S11: -0.2201 S12: -0.4460 S13: -0.3086 REMARK 3 S21: 0.2579 S22: 0.2382 S23: -0.1982 REMARK 3 S31: 0.3473 S32: 0.3789 S33: -0.0182 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8533 -51.5733 -19.1305 REMARK 3 T TENSOR REMARK 3 T11: 0.1513 T22: 0.0538 REMARK 3 T33: 0.1015 T12: -0.0420 REMARK 3 T13: 0.0246 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 18.3655 L22: 14.1259 REMARK 3 L33: 5.0693 L12: -13.1408 REMARK 3 L13: -3.8558 L23: 3.8948 REMARK 3 S TENSOR REMARK 3 S11: 0.2591 S12: 0.2673 S13: 0.6521 REMARK 3 S21: -0.0436 S22: -0.1477 S23: -0.1924 REMARK 3 S31: -0.5133 S32: -0.2630 S33: -0.1114 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 227 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2314 -64.1376 -23.0215 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.0846 REMARK 3 T33: -0.0006 T12: 0.0614 REMARK 3 T13: -0.0222 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 1.7199 L22: 10.2860 REMARK 3 L33: 7.1428 L12: 2.0365 REMARK 3 L13: 1.2022 L23: 6.1968 REMARK 3 S TENSOR REMARK 3 S11: -0.1369 S12: -0.0828 S13: 0.0868 REMARK 3 S21: -0.0897 S22: -0.0436 S23: 0.1906 REMARK 3 S31: -0.0331 S32: 0.0568 S33: 0.1805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : R-AXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : D*TREK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13400 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: N-TERMINAL "LAGLIDADG" DOMAIN OF T. MARITIMA REMARK 200 DUF199/WHIA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.0, 0.2 M NACL, 10% REMARK 280 PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.82400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.60750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.65150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.60750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.82400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.65150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 ARG A 6 REMARK 465 SER A 81 REMARK 465 HIS A 82 REMARK 465 ASN A 83 REMARK 465 ILE A 84 REMARK 465 LYS A 295 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 42 CD1 CD2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 ARG A 47 CD NE CZ NH1 NH2 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 89 CD1 REMARK 470 LEU A 138 CD1 CD2 REMARK 470 PHE A 139 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 140 OE1 OE2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 LEU A 144 CD1 CD2 REMARK 470 LEU A 146 CD1 CD2 REMARK 470 ARG A 148 CD NE CZ NH1 NH2 REMARK 470 LYS A 149 CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 ILE A 161 CD1 REMARK 470 ILE A 162 CD1 REMARK 470 LEU A 164 CG CD1 CD2 REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 166 CG OD1 ND2 REMARK 470 ARG A 168 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 176 CD CE NZ REMARK 470 ARG A 189 CD NE CZ NH1 NH2 REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 ARG A 201 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 202 CD CE NZ REMARK 470 VAL A 203 CG1 CG2 REMARK 470 ILE A 204 CG1 CG2 CD1 REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 227 CZ NH1 NH2 REMARK 470 ARG A 230 CD NE CZ NH1 NH2 REMARK 470 GLU A 237 CD OE1 OE2 REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 ARG A 257 CZ NH1 NH2 REMARK 470 LYS A 268 CE NZ REMARK 470 LYS A 274 NZ REMARK 470 LYS A 282 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 165 -64.58 73.11 REMARK 500 GLN A 188 -66.25 -130.90 REMARK 500 ASP A 206 103.14 -12.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 205 ASP A 206 -147.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3731 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 297 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HYJ RELATED DB: PDB REMARK 900 N-TERMINAL DOMAIN OF DUF199/WHIA DBREF 3HYI A 1 295 UNP Q9X234 Q9X234_THEMA 1 295 SEQRES 1 A 295 MET VAL SER LEU LEU ARG ARG THR PHE SER GLU GLU ILE SEQRES 2 A 295 LYS GLU GLU LEU VAL ASN VAL PRO PHE GLY SER ARG GLU SEQRES 3 A 295 GLU VAL ILE SER GLU LEU LEU GLY PHE ILE LYS ALA ARG SEQRES 4 A 295 GLY ASP LEU ASP VAL LYS SER ARG HIS ILE VAL PHE SER SEQRES 5 A 295 LEU HIS SER PHE ALA ALA SER ARG ARG LEU LEU ASN LEU SEQRES 6 A 295 MET LYS TYR LEU SER LYS PRO VAL SER GLU ILE ILE VAL SEQRES 7 A 295 GLU LYS SER HIS ASN ILE LYS LYS ARG TYR ILE LYS ILE SEQRES 8 A 295 THR ALA GLU TYR SER GLU SER PHE MET VAL ILE GLU PRO SEQRES 9 A 295 PHE PHE ASP VAL ALA LEU PHE VAL SER PHE LEU ARG GLY SEQRES 10 A 295 LEU PHE LEU SER GLY GLY SER MET THR ASN PRO ARG TYR SEQRES 11 A 295 HIS TYR HIS LEU GLU ILE ASN LEU PHE GLU GLU GLU THR SEQRES 12 A 295 LEU ALA LEU THR ARG LYS SER LEU LYS ASP PHE PHE ASN SEQRES 13 A 295 ILE ASN ALA GLY ILE ILE GLU LEU ARG ASN THR ARG LYS SEQRES 14 A 295 LEU TYR ILE LYS SER ILE LYS ASP ILE LEU VAL PHE LEU SEQRES 15 A 295 GLU ALA ILE GLY VAL GLN ARG LYS LEU GLU GLU ILE ASP SEQRES 16 A 295 ARG ILE VAL THR GLU ARG LYS VAL ILE GLY ASP VAL ASN SEQRES 17 A 295 ARG THR VAL ASN PHE ILE GLU ALA ASN ALA ILE ARG THR SEQRES 18 A 295 ALA ASN SER THR ALA ARG GLN ILE ARG ALA ILE GLU LEU SEQRES 19 A 295 ILE LYS GLU ASN MET GLY LEU GLU ASN LEU PRO GLU ASP SEQRES 20 A 295 LEU ARG ARG VAL ALA LEU VAL ARG LEU ARG ASN LYS GLU SEQRES 21 A 295 LEU SER LEU ARG GLU LEU GLY LYS LYS LEU ASN LEU THR SEQRES 22 A 295 LYS SER GLN ILE TYR SER LYS LEU LYS ARG ILE ILE LYS SEQRES 23 A 295 ILE ALA GLU ARG PHE GLY ASP VAL LYS HET GOL A3731 6 HET GOL A 296 6 HET NA A 297 1 HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 NA NA 1+ FORMUL 5 HOH *62(H2 O) HELIX 1 1 THR A 8 LEU A 17 1 10 HELIX 2 2 SER A 24 ARG A 39 1 16 HELIX 3 3 SER A 55 LEU A 69 1 15 HELIX 4 4 SER A 96 VAL A 101 5 6 HELIX 5 5 ASP A 107 GLY A 122 1 16 HELIX 6 6 GLU A 140 ASN A 156 1 17 HELIX 7 7 SER A 174 ILE A 185 1 12 HELIX 8 8 GLN A 188 LYS A 202 1 15 HELIX 9 9 ASP A 206 MET A 239 1 34 HELIX 10 10 GLY A 240 LEU A 244 5 5 HELIX 11 11 PRO A 245 ASN A 258 1 14 HELIX 12 12 SER A 262 LYS A 269 1 8 HELIX 13 13 THR A 273 GLU A 289 1 17 SHEET 1 A 4 GLY A 40 ASP A 43 0 SHEET 2 A 4 HIS A 48 LEU A 53 -1 O VAL A 50 N ASP A 41 SHEET 3 A 4 TYR A 88 GLU A 94 -1 O ILE A 89 N LEU A 53 SHEET 4 A 4 VAL A 73 GLU A 79 -1 N ILE A 77 O LYS A 90 SHEET 1 B 4 GLY A 123 MET A 125 0 SHEET 2 B 4 LEU A 134 LEU A 138 -1 O GLU A 135 N SER A 124 SHEET 3 B 4 ARG A 168 ILE A 172 -1 O LEU A 170 N ILE A 136 SHEET 4 B 4 GLY A 160 GLU A 163 -1 N ILE A 162 O LYS A 169 SITE 1 AC1 3 ARG A 7 THR A 8 GLU A 11 SITE 1 AC2 3 SER A 70 LYS A 71 GLU A 94 SITE 1 AC3 1 ASN A 258 CRYST1 51.648 61.303 97.215 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019362 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010286 0.00000