data_3HYN # _entry.id 3HYN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3HYN RCSB RCSB053743 WWPDB D_1000053743 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 391897 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3HYN _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-06-22 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative signal transduction protein (YP_002936568.1) from Eubacterium rectale at 1.20 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3HYN _cell.length_a 34.797 _cell.length_b 60.962 _cell.length_c 76.701 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HYN _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative signal transduction protein' 22084.646 1 ? ? ? ? 2 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 1 ? ? ? ? 3 water nat water 18.015 301 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)SYQNANYSAFYVSEPFSESNLGANSTHDFVYYN(MSE)LR(MSE)WKGEDNSFPFNDAHDKTYNVRDGSDWEKT LKPRLHTRLDNSKNIILFLSSITANSRALREE(MSE)NYGIGTKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLWDKLP AFRDN(MSE)SSVATLHIPCTKSVIISALNNEDF(MSE)VNT(MSE)ADAEKYYYKP ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSYQNANYSAFYVSEPFSESNLGANSTHDFVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNS KNIILFLSSITANSRALREEMNYGIGTKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLWDKLPAFRDNMSSVATLHIPC TKSVIISALNNEDFMVNTMADAEKYYYKP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 391897 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 SER n 1 4 TYR n 1 5 GLN n 1 6 ASN n 1 7 ALA n 1 8 ASN n 1 9 TYR n 1 10 SER n 1 11 ALA n 1 12 PHE n 1 13 TYR n 1 14 VAL n 1 15 SER n 1 16 GLU n 1 17 PRO n 1 18 PHE n 1 19 SER n 1 20 GLU n 1 21 SER n 1 22 ASN n 1 23 LEU n 1 24 GLY n 1 25 ALA n 1 26 ASN n 1 27 SER n 1 28 THR n 1 29 HIS n 1 30 ASP n 1 31 PHE n 1 32 VAL n 1 33 TYR n 1 34 TYR n 1 35 ASN n 1 36 MSE n 1 37 LEU n 1 38 ARG n 1 39 MSE n 1 40 TRP n 1 41 LYS n 1 42 GLY n 1 43 GLU n 1 44 ASP n 1 45 ASN n 1 46 SER n 1 47 PHE n 1 48 PRO n 1 49 PHE n 1 50 ASN n 1 51 ASP n 1 52 ALA n 1 53 HIS n 1 54 ASP n 1 55 LYS n 1 56 THR n 1 57 TYR n 1 58 ASN n 1 59 VAL n 1 60 ARG n 1 61 ASP n 1 62 GLY n 1 63 SER n 1 64 ASP n 1 65 TRP n 1 66 GLU n 1 67 LYS n 1 68 THR n 1 69 LEU n 1 70 LYS n 1 71 PRO n 1 72 ARG n 1 73 LEU n 1 74 HIS n 1 75 THR n 1 76 ARG n 1 77 LEU n 1 78 ASP n 1 79 ASN n 1 80 SER n 1 81 LYS n 1 82 ASN n 1 83 ILE n 1 84 ILE n 1 85 LEU n 1 86 PHE n 1 87 LEU n 1 88 SER n 1 89 SER n 1 90 ILE n 1 91 THR n 1 92 ALA n 1 93 ASN n 1 94 SER n 1 95 ARG n 1 96 ALA n 1 97 LEU n 1 98 ARG n 1 99 GLU n 1 100 GLU n 1 101 MSE n 1 102 ASN n 1 103 TYR n 1 104 GLY n 1 105 ILE n 1 106 GLY n 1 107 THR n 1 108 LYS n 1 109 GLY n 1 110 LEU n 1 111 PRO n 1 112 VAL n 1 113 ILE n 1 114 VAL n 1 115 ILE n 1 116 TYR n 1 117 PRO n 1 118 ASP n 1 119 TYR n 1 120 ASP n 1 121 LYS n 1 122 LYS n 1 123 SER n 1 124 ASP n 1 125 ILE n 1 126 VAL n 1 127 ASP n 1 128 SER n 1 129 ASN n 1 130 GLY n 1 131 ASN n 1 132 PHE n 1 133 LYS n 1 134 LYS n 1 135 GLN n 1 136 ILE n 1 137 LYS n 1 138 ASP n 1 139 LEU n 1 140 TRP n 1 141 ASP n 1 142 LYS n 1 143 LEU n 1 144 PRO n 1 145 ALA n 1 146 PHE n 1 147 ARG n 1 148 ASP n 1 149 ASN n 1 150 MSE n 1 151 SER n 1 152 SER n 1 153 VAL n 1 154 ALA n 1 155 THR n 1 156 LEU n 1 157 HIS n 1 158 ILE n 1 159 PRO n 1 160 CYS n 1 161 THR n 1 162 LYS n 1 163 SER n 1 164 VAL n 1 165 ILE n 1 166 ILE n 1 167 SER n 1 168 ALA n 1 169 LEU n 1 170 ASN n 1 171 ASN n 1 172 GLU n 1 173 ASP n 1 174 PHE n 1 175 MSE n 1 176 VAL n 1 177 ASN n 1 178 THR n 1 179 MSE n 1 180 ALA n 1 181 ASP n 1 182 ALA n 1 183 GLU n 1 184 LYS n 1 185 TYR n 1 186 TYR n 1 187 TYR n 1 188 LYS n 1 189 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene YP_002936568.1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Eubacterium rectale ATCC 33656' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 515619 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 33656 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3HYN _struct_ref.pdbx_db_accession 3HYN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GMSYQNANYSAFYVSEPFSESNLGANSTHDFVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNS KNIILFLSSITANSRALREEMNYGIGTKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLWDKLPAFRDNMSSVATLHIPC TKSVIISALNNEDFMVNTMADAEKYYYKP ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HYN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 189 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3HYN _struct_ref_seq.db_align_beg 0 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 188 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 188 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3HYN # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.84 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 33.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '40.0000% MPD, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-05-13 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97922 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength 0.97922 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3HYN _reflns.d_resolution_high 1.20 _reflns.d_resolution_low 32.461 _reflns.number_obs 51559 _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.percent_possible_obs 99.300 _reflns.B_iso_Wilson_estimate 8.178 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.100 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.20 1.24 14177 ? 4529 0.374 2.4 ? ? ? ? ? 95.00 ? 1 1.24 1.29 18177 ? 5194 0.318 3.0 ? ? ? ? ? 100.00 ? 2 1.29 1.35 18508 ? 5256 0.268 3.7 ? ? ? ? ? 100.00 ? 3 1.35 1.42 17865 ? 5057 0.224 4.5 ? ? ? ? ? 99.90 ? 4 1.42 1.51 18528 ? 5220 0.188 5.5 ? ? ? ? ? 100.00 ? 5 1.51 1.63 18782 ? 5289 0.147 7.4 ? ? ? ? ? 99.90 ? 6 1.63 1.79 17854 ? 5055 0.121 9.2 ? ? ? ? ? 99.70 ? 7 1.79 2.05 20302 ? 5232 0.092 12.0 ? ? ? ? ? 99.60 ? 8 2.05 2.58 32414 ? 5240 0.077 17.9 ? ? ? ? ? 99.80 ? 9 2.58 32.461 36452 ? 5483 0.056 23.6 ? ? ? ? ? 99.00 ? 10 # _refine.entry_id 3HYN _refine.ls_d_res_high 1.200 _refine.ls_d_res_low 32.461 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.350 _refine.ls_number_reflns_obs 51494 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.85 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. (4R)-2-METHYLPENTANE-2,4-DIOL (MRD) MODELED IS PRESENT IN CRYSTALLIZATION SOLUTION. 4. CISPEPTIDE 28-29 ARE SUPPORTED BY DENSITY. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.118 _refine.ls_R_factor_R_work 0.117 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.139 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 2621 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 12.960 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.040 _refine.aniso_B[2][2] -0.010 _refine.aniso_B[3][3] -0.030 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.982 _refine.correlation_coeff_Fo_to_Fc_free 0.978 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.036 _refine.pdbx_overall_ESU_R_Free 0.034 _refine.overall_SU_ML 0.021 _refine.overall_SU_B 1.059 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 77.73 _refine.B_iso_min 3.76 _refine.occupancy_max 1.00 _refine.occupancy_min 0.17 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1499 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 301 _refine_hist.number_atoms_total 1808 _refine_hist.d_res_high 1.200 _refine_hist.d_res_low 32.461 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1743 0.014 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1186 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2391 1.533 1.944 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2914 0.949 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 233 6.344 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 90 35.497 24.889 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 308 11.499 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 9 19.899 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 252 0.093 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2003 0.009 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 362 0.002 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1044 1.596 1.500 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 412 0.525 1.500 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1712 2.347 2.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 699 3.239 3.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 662 4.371 4.500 ? ? r_rigid_bond_restr 'X-RAY DIFFRACTION' 2929 1.371 3.000 ? ? # _refine_ls_shell.d_res_high 1.200 _refine_ls_shell.d_res_low 1.231 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 93.640 _refine_ls_shell.number_reflns_R_work 3330 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.201 _refine_ls_shell.R_factor_R_free 0.225 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 190 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3520 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3HYN _struct.title 'Crystal structure of a putative signal transduction protein (eubrec_0645) from eubacterium rectale atcc 33656 at 1.20 A resolution' _struct.pdbx_descriptor 'Putative signal transduction protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Duf1863 family protein, nucleotide-binding protein, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, signaling protein ; _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.entry_id 3HYN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 24 ? THR A 28 ? GLY A 23 THR A 27 5 ? 5 HELX_P HELX_P2 2 ASP A 30 ? ASP A 44 ? ASP A 29 ASP A 43 1 ? 15 HELX_P HELX_P3 3 THR A 68 ? ASN A 79 ? THR A 67 ASN A 78 1 ? 12 HELX_P HELX_P4 4 SER A 94 ? ILE A 105 ? SER A 93 ILE A 104 1 ? 12 HELX_P HELX_P5 5 LYS A 121 ? ILE A 125 ? LYS A 120 ILE A 124 5 ? 5 HELX_P HELX_P6 6 LYS A 133 ? LYS A 142 ? LYS A 132 LYS A 141 1 ? 10 HELX_P HELX_P7 7 LEU A 143 ? ASP A 148 ? LEU A 142 ASP A 147 1 ? 6 HELX_P HELX_P8 8 ASN A 149 ? SER A 152 ? ASN A 148 SER A 151 5 ? 4 HELX_P HELX_P9 9 THR A 161 ? ASN A 170 ? THR A 160 ASN A 169 1 ? 10 HELX_P HELX_P10 10 ASN A 171 ? MSE A 179 ? ASN A 170 MSE A 178 5 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ASN 35 C ? ? ? 1_555 A MSE 36 N ? ? A ASN 34 A MSE 35 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale both ? A MSE 36 C ? ? ? 1_555 A LEU 37 N ? ? A MSE 35 A LEU 36 1_555 ? ? ? ? ? ? ? 1.340 ? covale3 covale both ? A ARG 38 C ? ? ? 1_555 A MSE 39 N ? ? A ARG 37 A MSE 38 1_555 ? ? ? ? ? ? ? 1.320 ? covale4 covale both ? A MSE 39 C ? ? ? 1_555 A TRP 40 N ? ? A MSE 38 A TRP 39 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale both ? A GLU 100 C ? ? ? 1_555 A MSE 101 N ? ? A GLU 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.326 ? covale6 covale both ? A MSE 101 C ? ? ? 1_555 A ASN 102 N ? ? A MSE 100 A ASN 101 1_555 ? ? ? ? ? ? ? 1.349 ? covale7 covale both ? A ASN 149 C ? ? ? 1_555 A MSE 150 N ? ? A ASN 148 A MSE 149 1_555 ? ? ? ? ? ? ? 1.328 ? covale8 covale both ? A MSE 150 C ? ? ? 1_555 A SER 151 N ? ? A MSE 149 A SER 150 1_555 ? ? ? ? ? ? ? 1.339 ? covale9 covale both ? A PHE 174 C ? ? ? 1_555 A MSE 175 N ? ? A PHE 173 A MSE 174 1_555 ? ? ? ? ? ? ? 1.343 ? covale10 covale both ? A MSE 175 C ? ? ? 1_555 A VAL 176 N ? ? A MSE 174 A VAL 175 1_555 ? ? ? ? ? ? ? 1.339 ? covale11 covale both ? A THR 178 C ? ? ? 1_555 A MSE 179 N ? ? A THR 177 A MSE 178 1_555 ? ? ? ? ? ? ? 1.336 ? covale12 covale both ? A MSE 179 C ? ? ? 1_555 A ALA 180 N ? ? A MSE 178 A ALA 179 1_555 ? ? ? ? ? ? ? 1.317 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 16 A . ? GLU 15 A PRO 17 A ? PRO 16 A 1 -2.36 2 HIS 29 A . ? HIS 28 A ASP 30 A ? ASP 29 A 1 -0.48 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 7 ? ALA A 11 ? ALA A 6 ALA A 10 A 2 SER A 80 ? PHE A 86 ? SER A 79 PHE A 85 A 3 VAL A 112 ? TYR A 116 ? VAL A 111 TYR A 115 A 4 ALA A 154 ? PRO A 159 ? ALA A 153 PRO A 158 A 5 GLU A 183 ? TYR A 186 ? GLU A 182 TYR A 185 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 7 ? N ALA A 6 O LYS A 81 ? O LYS A 80 A 2 3 N ILE A 83 ? N ILE A 82 O ILE A 113 ? O ILE A 112 A 3 4 N VAL A 114 ? N VAL A 113 O LEU A 156 ? O LEU A 155 A 4 5 N THR A 155 ? N THR A 154 O TYR A 185 ? O TYR A 184 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE MRD A 189' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ASN A 22 ? ASN A 21 . ? 3_545 ? 2 AC1 9 LEU A 23 ? LEU A 22 . ? 3_545 ? 3 AC1 9 GLY A 24 ? GLY A 23 . ? 3_545 ? 4 AC1 9 ASN A 171 ? ASN A 170 . ? 1_555 ? 5 AC1 9 ASP A 173 ? ASP A 172 . ? 1_555 ? 6 AC1 9 PHE A 174 ? PHE A 173 . ? 1_555 ? 7 AC1 9 TYR A 185 ? TYR A 184 . ? 1_555 ? 8 AC1 9 TYR A 186 ? TYR A 185 . ? 1_555 ? 9 AC1 9 HOH C . ? HOH A 247 . ? 1_555 ? # _atom_sites.entry_id 3HYN _atom_sites.fract_transf_matrix[1][1] 0.028738 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016404 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013038 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 SER 3 2 ? ? ? A . n A 1 4 TYR 4 3 3 TYR TYR A . n A 1 5 GLN 5 4 4 GLN GLN A . n A 1 6 ASN 6 5 5 ASN ASN A . n A 1 7 ALA 7 6 6 ALA ALA A . n A 1 8 ASN 8 7 7 ASN ASN A . n A 1 9 TYR 9 8 8 TYR TYR A . n A 1 10 SER 10 9 9 SER SER A . n A 1 11 ALA 11 10 10 ALA ALA A . n A 1 12 PHE 12 11 11 PHE PHE A . n A 1 13 TYR 13 12 12 TYR TYR A . n A 1 14 VAL 14 13 13 VAL VAL A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 PRO 17 16 16 PRO PRO A . n A 1 18 PHE 18 17 17 PHE PHE A . n A 1 19 SER 19 18 18 SER SER A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 ASN 26 25 25 ASN ASN A . n A 1 27 SER 27 26 26 SER SER A . n A 1 28 THR 28 27 27 THR THR A . n A 1 29 HIS 29 28 28 HIS HIS A . n A 1 30 ASP 30 29 29 ASP ASP A . n A 1 31 PHE 31 30 30 PHE PHE A . n A 1 32 VAL 32 31 31 VAL VAL A . n A 1 33 TYR 33 32 32 TYR TYR A . n A 1 34 TYR 34 33 33 TYR TYR A . n A 1 35 ASN 35 34 34 ASN ASN A . n A 1 36 MSE 36 35 35 MSE MSE A . n A 1 37 LEU 37 36 36 LEU LEU A . n A 1 38 ARG 38 37 37 ARG ARG A . n A 1 39 MSE 39 38 38 MSE MSE A . n A 1 40 TRP 40 39 39 TRP TRP A . n A 1 41 LYS 41 40 40 LYS LYS A . n A 1 42 GLY 42 41 41 GLY GLY A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 ASP 44 43 43 ASP ASP A . n A 1 45 ASN 45 44 44 ASN ASN A . n A 1 46 SER 46 45 45 SER SER A . n A 1 47 PHE 47 46 46 PHE PHE A . n A 1 48 PRO 48 47 47 PRO PRO A . n A 1 49 PHE 49 48 48 PHE PHE A . n A 1 50 ASN 50 49 49 ASN ASN A . n A 1 51 ASP 51 50 50 ASP ASP A . n A 1 52 ALA 52 51 51 ALA ALA A . n A 1 53 HIS 53 52 52 HIS HIS A . n A 1 54 ASP 54 53 53 ASP ASP A . n A 1 55 LYS 55 54 54 LYS LYS A . n A 1 56 THR 56 55 55 THR THR A . n A 1 57 TYR 57 56 56 TYR TYR A . n A 1 58 ASN 58 57 57 ASN ASN A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 ARG 60 59 59 ARG ARG A . n A 1 61 ASP 61 60 60 ASP ASP A . n A 1 62 GLY 62 61 61 GLY GLY A . n A 1 63 SER 63 62 62 SER SER A . n A 1 64 ASP 64 63 63 ASP ASP A . n A 1 65 TRP 65 64 64 TRP TRP A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 THR 68 67 67 THR THR A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 LYS 70 69 69 LYS LYS A . n A 1 71 PRO 71 70 70 PRO PRO A . n A 1 72 ARG 72 71 71 ARG ARG A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 HIS 74 73 73 HIS HIS A . n A 1 75 THR 75 74 74 THR THR A . n A 1 76 ARG 76 75 75 ARG ARG A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 ASP 78 77 77 ASP ASP A . n A 1 79 ASN 79 78 78 ASN ASN A . n A 1 80 SER 80 79 79 SER SER A . n A 1 81 LYS 81 80 80 LYS LYS A . n A 1 82 ASN 82 81 81 ASN ASN A . n A 1 83 ILE 83 82 82 ILE ILE A . n A 1 84 ILE 84 83 83 ILE ILE A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 PHE 86 85 85 PHE PHE A . n A 1 87 LEU 87 86 86 LEU LEU A . n A 1 88 SER 88 87 87 SER SER A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 ILE 90 89 89 ILE ILE A . n A 1 91 THR 91 90 90 THR THR A . n A 1 92 ALA 92 91 91 ALA ALA A . n A 1 93 ASN 93 92 92 ASN ASN A . n A 1 94 SER 94 93 93 SER SER A . n A 1 95 ARG 95 94 94 ARG ARG A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 GLU 100 99 99 GLU GLU A . n A 1 101 MSE 101 100 100 MSE MSE A . n A 1 102 ASN 102 101 101 ASN ASN A . n A 1 103 TYR 103 102 102 TYR TYR A . n A 1 104 GLY 104 103 103 GLY GLY A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 GLY 106 105 105 GLY GLY A . n A 1 107 THR 107 106 106 THR THR A . n A 1 108 LYS 108 107 107 LYS LYS A . n A 1 109 GLY 109 108 108 GLY GLY A . n A 1 110 LEU 110 109 109 LEU LEU A . n A 1 111 PRO 111 110 110 PRO PRO A . n A 1 112 VAL 112 111 111 VAL VAL A . n A 1 113 ILE 113 112 112 ILE ILE A . n A 1 114 VAL 114 113 113 VAL VAL A . n A 1 115 ILE 115 114 114 ILE ILE A . n A 1 116 TYR 116 115 115 TYR TYR A . n A 1 117 PRO 117 116 116 PRO PRO A . n A 1 118 ASP 118 117 117 ASP ASP A . n A 1 119 TYR 119 118 118 TYR TYR A . n A 1 120 ASP 120 119 119 ASP ASP A . n A 1 121 LYS 121 120 120 LYS LYS A . n A 1 122 LYS 122 121 121 LYS LYS A . n A 1 123 SER 123 122 122 SER SER A . n A 1 124 ASP 124 123 123 ASP ASP A . n A 1 125 ILE 125 124 124 ILE ILE A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 ASP 127 126 126 ASP ASP A . n A 1 128 SER 128 127 127 SER SER A . n A 1 129 ASN 129 128 128 ASN ASN A . n A 1 130 GLY 130 129 129 GLY GLY A . n A 1 131 ASN 131 130 130 ASN ASN A . n A 1 132 PHE 132 131 131 PHE PHE A . n A 1 133 LYS 133 132 132 LYS LYS A . n A 1 134 LYS 134 133 133 LYS LYS A . n A 1 135 GLN 135 134 134 GLN GLN A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 LYS 137 136 136 LYS LYS A . n A 1 138 ASP 138 137 137 ASP ASP A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 TRP 140 139 139 TRP TRP A . n A 1 141 ASP 141 140 140 ASP ASP A . n A 1 142 LYS 142 141 141 LYS LYS A . n A 1 143 LEU 143 142 142 LEU LEU A . n A 1 144 PRO 144 143 143 PRO PRO A . n A 1 145 ALA 145 144 144 ALA ALA A . n A 1 146 PHE 146 145 145 PHE PHE A . n A 1 147 ARG 147 146 146 ARG ARG A . n A 1 148 ASP 148 147 147 ASP ASP A . n A 1 149 ASN 149 148 148 ASN ASN A . n A 1 150 MSE 150 149 149 MSE MSE A . n A 1 151 SER 151 150 150 SER SER A . n A 1 152 SER 152 151 151 SER SER A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 ALA 154 153 153 ALA ALA A . n A 1 155 THR 155 154 154 THR THR A . n A 1 156 LEU 156 155 155 LEU LEU A . n A 1 157 HIS 157 156 156 HIS HIS A . n A 1 158 ILE 158 157 157 ILE ILE A . n A 1 159 PRO 159 158 158 PRO PRO A . n A 1 160 CYS 160 159 159 CYS CYS A . n A 1 161 THR 161 160 160 THR THR A . n A 1 162 LYS 162 161 161 LYS LYS A . n A 1 163 SER 163 162 162 SER SER A . n A 1 164 VAL 164 163 163 VAL VAL A . n A 1 165 ILE 165 164 164 ILE ILE A . n A 1 166 ILE 166 165 165 ILE ILE A . n A 1 167 SER 167 166 166 SER SER A . n A 1 168 ALA 168 167 167 ALA ALA A . n A 1 169 LEU 169 168 168 LEU LEU A . n A 1 170 ASN 170 169 169 ASN ASN A . n A 1 171 ASN 171 170 170 ASN ASN A . n A 1 172 GLU 172 171 171 GLU GLU A . n A 1 173 ASP 173 172 172 ASP ASP A . n A 1 174 PHE 174 173 173 PHE PHE A . n A 1 175 MSE 175 174 174 MSE MSE A . n A 1 176 VAL 176 175 175 VAL VAL A . n A 1 177 ASN 177 176 176 ASN ASN A . n A 1 178 THR 178 177 177 THR THR A . n A 1 179 MSE 179 178 178 MSE MSE A . n A 1 180 ALA 180 179 179 ALA ALA A . n A 1 181 ASP 181 180 180 ASP ASP A . n A 1 182 ALA 182 181 181 ALA ALA A . n A 1 183 GLU 183 182 182 GLU GLU A . n A 1 184 LYS 184 183 183 LYS LYS A . n A 1 185 TYR 185 184 184 TYR TYR A . n A 1 186 TYR 186 185 185 TYR TYR A . n A 1 187 TYR 187 186 186 TYR TYR A . n A 1 188 LYS 188 187 187 LYS LYS A . n A 1 189 PRO 189 188 188 PRO PRO A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MRD 1 189 1 MRD MRD A . C 3 HOH 1 190 190 HOH HOH A . C 3 HOH 2 191 191 HOH HOH A . C 3 HOH 3 192 192 HOH HOH A . C 3 HOH 4 193 193 HOH HOH A . C 3 HOH 5 194 194 HOH HOH A . C 3 HOH 6 195 195 HOH HOH A . C 3 HOH 7 196 196 HOH HOH A . C 3 HOH 8 197 197 HOH HOH A . C 3 HOH 9 198 198 HOH HOH A . C 3 HOH 10 199 199 HOH HOH A . C 3 HOH 11 200 200 HOH HOH A . C 3 HOH 12 201 201 HOH HOH A . C 3 HOH 13 202 202 HOH HOH A . C 3 HOH 14 203 203 HOH HOH A . C 3 HOH 15 204 204 HOH HOH A . C 3 HOH 16 205 205 HOH HOH A . C 3 HOH 17 206 206 HOH HOH A . C 3 HOH 18 207 207 HOH HOH A . C 3 HOH 19 208 208 HOH HOH A . C 3 HOH 20 209 209 HOH HOH A . C 3 HOH 21 210 210 HOH HOH A . C 3 HOH 22 211 211 HOH HOH A . C 3 HOH 23 212 212 HOH HOH A . C 3 HOH 24 213 213 HOH HOH A . C 3 HOH 25 214 214 HOH HOH A . C 3 HOH 26 215 215 HOH HOH A . C 3 HOH 27 216 216 HOH HOH A . C 3 HOH 28 217 217 HOH HOH A . C 3 HOH 29 218 218 HOH HOH A . C 3 HOH 30 219 219 HOH HOH A . C 3 HOH 31 220 220 HOH HOH A . C 3 HOH 32 221 221 HOH HOH A . C 3 HOH 33 222 222 HOH HOH A . C 3 HOH 34 223 223 HOH HOH A . C 3 HOH 35 224 224 HOH HOH A . C 3 HOH 36 225 225 HOH HOH A . C 3 HOH 37 226 226 HOH HOH A . C 3 HOH 38 227 227 HOH HOH A . C 3 HOH 39 228 228 HOH HOH A . C 3 HOH 40 229 229 HOH HOH A . C 3 HOH 41 230 230 HOH HOH A . C 3 HOH 42 231 231 HOH HOH A . C 3 HOH 43 232 232 HOH HOH A . C 3 HOH 44 233 233 HOH HOH A . C 3 HOH 45 234 234 HOH HOH A . C 3 HOH 46 235 235 HOH HOH A . C 3 HOH 47 236 236 HOH HOH A . C 3 HOH 48 237 237 HOH HOH A . C 3 HOH 49 238 238 HOH HOH A . C 3 HOH 50 239 239 HOH HOH A . C 3 HOH 51 240 240 HOH HOH A . C 3 HOH 52 241 241 HOH HOH A . C 3 HOH 53 242 242 HOH HOH A . C 3 HOH 54 243 243 HOH HOH A . C 3 HOH 55 244 244 HOH HOH A . C 3 HOH 56 245 245 HOH HOH A . C 3 HOH 57 246 246 HOH HOH A . C 3 HOH 58 247 247 HOH HOH A . C 3 HOH 59 248 248 HOH HOH A . C 3 HOH 60 249 249 HOH HOH A . C 3 HOH 61 250 250 HOH HOH A . C 3 HOH 62 251 251 HOH HOH A . C 3 HOH 63 252 252 HOH HOH A . C 3 HOH 64 253 253 HOH HOH A . C 3 HOH 65 254 254 HOH HOH A . C 3 HOH 66 255 255 HOH HOH A . C 3 HOH 67 256 256 HOH HOH A . C 3 HOH 68 257 257 HOH HOH A . C 3 HOH 69 258 258 HOH HOH A . C 3 HOH 70 259 259 HOH HOH A . C 3 HOH 71 260 260 HOH HOH A . C 3 HOH 72 261 261 HOH HOH A . C 3 HOH 73 262 262 HOH HOH A . C 3 HOH 74 263 263 HOH HOH A . C 3 HOH 75 264 264 HOH HOH A . C 3 HOH 76 265 265 HOH HOH A . C 3 HOH 77 266 266 HOH HOH A . C 3 HOH 78 267 267 HOH HOH A . C 3 HOH 79 268 268 HOH HOH A . C 3 HOH 80 269 269 HOH HOH A . C 3 HOH 81 270 270 HOH HOH A . C 3 HOH 82 271 271 HOH HOH A . C 3 HOH 83 272 272 HOH HOH A . C 3 HOH 84 273 273 HOH HOH A . C 3 HOH 85 274 274 HOH HOH A . C 3 HOH 86 275 275 HOH HOH A . C 3 HOH 87 276 276 HOH HOH A . C 3 HOH 88 277 277 HOH HOH A . C 3 HOH 89 278 278 HOH HOH A . C 3 HOH 90 279 279 HOH HOH A . C 3 HOH 91 280 280 HOH HOH A . C 3 HOH 92 281 281 HOH HOH A . C 3 HOH 93 282 282 HOH HOH A . C 3 HOH 94 283 283 HOH HOH A . C 3 HOH 95 284 284 HOH HOH A . C 3 HOH 96 285 285 HOH HOH A . C 3 HOH 97 286 286 HOH HOH A . C 3 HOH 98 287 287 HOH HOH A . C 3 HOH 99 288 288 HOH HOH A . C 3 HOH 100 289 289 HOH HOH A . C 3 HOH 101 290 290 HOH HOH A . C 3 HOH 102 291 291 HOH HOH A . C 3 HOH 103 292 292 HOH HOH A . C 3 HOH 104 293 293 HOH HOH A . C 3 HOH 105 294 294 HOH HOH A . C 3 HOH 106 295 295 HOH HOH A . C 3 HOH 107 296 296 HOH HOH A . C 3 HOH 108 297 297 HOH HOH A . C 3 HOH 109 298 298 HOH HOH A . C 3 HOH 110 299 299 HOH HOH A . C 3 HOH 111 300 300 HOH HOH A . C 3 HOH 112 301 301 HOH HOH A . C 3 HOH 113 302 302 HOH HOH A . C 3 HOH 114 303 2 HOH HOH A . C 3 HOH 115 304 3 HOH HOH A . C 3 HOH 116 305 4 HOH HOH A . C 3 HOH 117 306 5 HOH HOH A . C 3 HOH 118 307 6 HOH HOH A . C 3 HOH 119 308 7 HOH HOH A . C 3 HOH 120 309 8 HOH HOH A . C 3 HOH 121 310 9 HOH HOH A . C 3 HOH 122 311 10 HOH HOH A . C 3 HOH 123 312 11 HOH HOH A . C 3 HOH 124 313 12 HOH HOH A . C 3 HOH 125 314 13 HOH HOH A . C 3 HOH 126 315 14 HOH HOH A . C 3 HOH 127 316 15 HOH HOH A . C 3 HOH 128 317 16 HOH HOH A . C 3 HOH 129 318 17 HOH HOH A . C 3 HOH 130 319 18 HOH HOH A . C 3 HOH 131 320 19 HOH HOH A . C 3 HOH 132 321 20 HOH HOH A . C 3 HOH 133 322 21 HOH HOH A . C 3 HOH 134 323 22 HOH HOH A . C 3 HOH 135 324 23 HOH HOH A . C 3 HOH 136 325 24 HOH HOH A . C 3 HOH 137 326 25 HOH HOH A . C 3 HOH 138 327 26 HOH HOH A . C 3 HOH 139 328 27 HOH HOH A . C 3 HOH 140 329 28 HOH HOH A . C 3 HOH 141 330 29 HOH HOH A . C 3 HOH 142 331 30 HOH HOH A . C 3 HOH 143 332 31 HOH HOH A . C 3 HOH 144 333 32 HOH HOH A . C 3 HOH 145 334 33 HOH HOH A . C 3 HOH 146 335 34 HOH HOH A . C 3 HOH 147 336 35 HOH HOH A . C 3 HOH 148 337 36 HOH HOH A . C 3 HOH 149 338 37 HOH HOH A . C 3 HOH 150 339 38 HOH HOH A . C 3 HOH 151 340 39 HOH HOH A . C 3 HOH 152 341 40 HOH HOH A . C 3 HOH 153 342 41 HOH HOH A . C 3 HOH 154 343 42 HOH HOH A . C 3 HOH 155 344 43 HOH HOH A . C 3 HOH 156 345 44 HOH HOH A . C 3 HOH 157 346 45 HOH HOH A . C 3 HOH 158 347 46 HOH HOH A . C 3 HOH 159 348 47 HOH HOH A . C 3 HOH 160 349 48 HOH HOH A . C 3 HOH 161 350 49 HOH HOH A . C 3 HOH 162 351 50 HOH HOH A . C 3 HOH 163 352 51 HOH HOH A . C 3 HOH 164 353 52 HOH HOH A . C 3 HOH 165 354 53 HOH HOH A . C 3 HOH 166 355 54 HOH HOH A . C 3 HOH 167 356 55 HOH HOH A . C 3 HOH 168 357 56 HOH HOH A . C 3 HOH 169 358 57 HOH HOH A . C 3 HOH 170 359 58 HOH HOH A . C 3 HOH 171 360 59 HOH HOH A . C 3 HOH 172 361 60 HOH HOH A . C 3 HOH 173 362 61 HOH HOH A . C 3 HOH 174 363 62 HOH HOH A . C 3 HOH 175 364 63 HOH HOH A . C 3 HOH 176 365 64 HOH HOH A . C 3 HOH 177 366 65 HOH HOH A . C 3 HOH 178 367 66 HOH HOH A . C 3 HOH 179 368 67 HOH HOH A . C 3 HOH 180 369 68 HOH HOH A . C 3 HOH 181 370 69 HOH HOH A . C 3 HOH 182 371 70 HOH HOH A . C 3 HOH 183 372 71 HOH HOH A . C 3 HOH 184 373 72 HOH HOH A . C 3 HOH 185 374 73 HOH HOH A . C 3 HOH 186 375 74 HOH HOH A . C 3 HOH 187 376 75 HOH HOH A . C 3 HOH 188 377 76 HOH HOH A . C 3 HOH 189 378 77 HOH HOH A . C 3 HOH 190 379 78 HOH HOH A . C 3 HOH 191 380 79 HOH HOH A . C 3 HOH 192 381 80 HOH HOH A . C 3 HOH 193 382 81 HOH HOH A . C 3 HOH 194 383 82 HOH HOH A . C 3 HOH 195 384 83 HOH HOH A . C 3 HOH 196 385 84 HOH HOH A . C 3 HOH 197 386 85 HOH HOH A . C 3 HOH 198 387 86 HOH HOH A . C 3 HOH 199 388 87 HOH HOH A . C 3 HOH 200 389 88 HOH HOH A . C 3 HOH 201 390 89 HOH HOH A . C 3 HOH 202 391 90 HOH HOH A . C 3 HOH 203 392 91 HOH HOH A . C 3 HOH 204 393 92 HOH HOH A . C 3 HOH 205 394 93 HOH HOH A . C 3 HOH 206 395 94 HOH HOH A . C 3 HOH 207 396 95 HOH HOH A . C 3 HOH 208 397 96 HOH HOH A . C 3 HOH 209 398 97 HOH HOH A . C 3 HOH 210 399 98 HOH HOH A . C 3 HOH 211 400 99 HOH HOH A . C 3 HOH 212 401 100 HOH HOH A . C 3 HOH 213 402 101 HOH HOH A . C 3 HOH 214 403 102 HOH HOH A . C 3 HOH 215 404 103 HOH HOH A . C 3 HOH 216 405 104 HOH HOH A . C 3 HOH 217 406 105 HOH HOH A . C 3 HOH 218 407 106 HOH HOH A . C 3 HOH 219 408 107 HOH HOH A . C 3 HOH 220 409 108 HOH HOH A . C 3 HOH 221 410 109 HOH HOH A . C 3 HOH 222 411 110 HOH HOH A . C 3 HOH 223 412 111 HOH HOH A . C 3 HOH 224 413 112 HOH HOH A . C 3 HOH 225 414 113 HOH HOH A . C 3 HOH 226 415 114 HOH HOH A . C 3 HOH 227 416 115 HOH HOH A . C 3 HOH 228 417 116 HOH HOH A . C 3 HOH 229 418 117 HOH HOH A . C 3 HOH 230 419 118 HOH HOH A . C 3 HOH 231 420 119 HOH HOH A . C 3 HOH 232 421 120 HOH HOH A . C 3 HOH 233 422 121 HOH HOH A . C 3 HOH 234 423 122 HOH HOH A . C 3 HOH 235 424 123 HOH HOH A . C 3 HOH 236 425 124 HOH HOH A . C 3 HOH 237 426 125 HOH HOH A . C 3 HOH 238 427 126 HOH HOH A . C 3 HOH 239 428 127 HOH HOH A . C 3 HOH 240 429 128 HOH HOH A . C 3 HOH 241 430 129 HOH HOH A . C 3 HOH 242 431 130 HOH HOH A . C 3 HOH 243 432 131 HOH HOH A . C 3 HOH 244 433 132 HOH HOH A . C 3 HOH 245 434 133 HOH HOH A . C 3 HOH 246 435 134 HOH HOH A . C 3 HOH 247 436 135 HOH HOH A . C 3 HOH 248 437 136 HOH HOH A . C 3 HOH 249 438 137 HOH HOH A . C 3 HOH 250 439 138 HOH HOH A . C 3 HOH 251 440 139 HOH HOH A . C 3 HOH 252 441 140 HOH HOH A . C 3 HOH 253 442 141 HOH HOH A . C 3 HOH 254 443 142 HOH HOH A . C 3 HOH 255 444 143 HOH HOH A . C 3 HOH 256 445 144 HOH HOH A . C 3 HOH 257 446 145 HOH HOH A . C 3 HOH 258 447 146 HOH HOH A . C 3 HOH 259 448 147 HOH HOH A . C 3 HOH 260 449 148 HOH HOH A . C 3 HOH 261 450 149 HOH HOH A . C 3 HOH 262 451 150 HOH HOH A . C 3 HOH 263 452 151 HOH HOH A . C 3 HOH 264 453 152 HOH HOH A . C 3 HOH 265 454 153 HOH HOH A . C 3 HOH 266 455 154 HOH HOH A . C 3 HOH 267 456 155 HOH HOH A . C 3 HOH 268 457 156 HOH HOH A . C 3 HOH 269 458 157 HOH HOH A . C 3 HOH 270 459 158 HOH HOH A . C 3 HOH 271 460 159 HOH HOH A . C 3 HOH 272 461 160 HOH HOH A . C 3 HOH 273 462 161 HOH HOH A . C 3 HOH 274 463 162 HOH HOH A . C 3 HOH 275 464 163 HOH HOH A . C 3 HOH 276 465 164 HOH HOH A . C 3 HOH 277 466 165 HOH HOH A . C 3 HOH 278 467 166 HOH HOH A . C 3 HOH 279 468 167 HOH HOH A . C 3 HOH 280 469 168 HOH HOH A . C 3 HOH 281 470 169 HOH HOH A . C 3 HOH 282 471 170 HOH HOH A . C 3 HOH 283 472 171 HOH HOH A . C 3 HOH 284 473 172 HOH HOH A . C 3 HOH 285 474 173 HOH HOH A . C 3 HOH 286 475 174 HOH HOH A . C 3 HOH 287 476 175 HOH HOH A . C 3 HOH 288 477 176 HOH HOH A . C 3 HOH 289 478 177 HOH HOH A . C 3 HOH 290 479 178 HOH HOH A . C 3 HOH 291 480 179 HOH HOH A . C 3 HOH 292 481 180 HOH HOH A . C 3 HOH 293 482 181 HOH HOH A . C 3 HOH 294 483 182 HOH HOH A . C 3 HOH 295 484 183 HOH HOH A . C 3 HOH 296 485 184 HOH HOH A . C 3 HOH 297 486 185 HOH HOH A . C 3 HOH 298 487 186 HOH HOH A . C 3 HOH 299 488 187 HOH HOH A . C 3 HOH 300 489 188 HOH HOH A . C 3 HOH 301 490 189 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 36 A MSE 35 ? MET SELENOMETHIONINE 2 A MSE 39 A MSE 38 ? MET SELENOMETHIONINE 3 A MSE 101 A MSE 100 ? MET SELENOMETHIONINE 4 A MSE 150 A MSE 149 ? MET SELENOMETHIONINE 5 A MSE 175 A MSE 174 ? MET SELENOMETHIONINE 6 A MSE 179 A MSE 178 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.language' 5 4 'Structure model' '_software.location' 6 4 'Structure model' '_software.name' 7 4 'Structure model' '_software.type' 8 4 'Structure model' '_software.version' 9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 4 'Structure model' '_struct_ref_seq.db_align_beg' 11 4 'Structure model' '_struct_ref_seq.db_align_end' # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0092 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3HYN _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 97 ? B CZ A ARG 97 ? B NH1 A ARG 97 ? B 124.05 120.30 3.75 0.50 N 2 1 NE A ARG 97 ? B CZ A ARG 97 ? B NH2 A ARG 97 ? B 115.93 120.30 -4.37 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 20 ? B -49.10 -7.72 2 1 THR A 55 ? ? -176.86 136.36 3 1 THR A 67 ? ? -134.51 -57.72 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 3 ? CG ? A TYR 4 CG 2 1 Y 1 A TYR 3 ? CD1 ? A TYR 4 CD1 3 1 Y 1 A TYR 3 ? CD2 ? A TYR 4 CD2 4 1 Y 1 A TYR 3 ? CE1 ? A TYR 4 CE1 5 1 Y 1 A TYR 3 ? CE2 ? A TYR 4 CE2 6 1 Y 1 A TYR 3 ? CZ ? A TYR 4 CZ 7 1 Y 1 A TYR 3 ? OH ? A TYR 4 OH 8 1 Y 1 A LYS 54 ? CD ? A LYS 55 CD 9 1 Y 1 A LYS 54 ? CE ? A LYS 55 CE 10 1 Y 1 A LYS 54 ? NZ ? A LYS 55 NZ 11 1 Y 1 A LYS 66 ? CE ? A LYS 67 CE 12 1 Y 1 A LYS 66 ? NZ ? A LYS 67 NZ 13 1 Y 1 A LYS 120 ? CE ? A LYS 121 CE 14 1 Y 1 A LYS 120 ? NZ ? A LYS 121 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A SER 2 ? A SER 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #