HEADER TRANSCRIPTION 23-JUN-09 3HZF
TITLE STRUCTURE OF TR-ALFA BOUND TO SELECTIVE THYROMIMETIC GC-1 IN C2 SPACE
TITLE 2 GROUP
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: THYROID HORMONE RECEPTOR, ALPHA ISOFORM 1 VARIANT;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 135-397;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: THRA;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A
KEYWDS NUCLEAR RECEPTOR, LIGAND BINDING DOMAIN, DNA-BINDING, METAL-BINDING,
KEYWDS 2 NUCLEUS, RECEPTOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC-
KEYWDS 3 FINGER
EXPDTA X-RAY DIFFRACTION
AUTHOR R.APARICIO,L.BLEICHER,I.POLIKARPOV
REVDAT 5 20-NOV-24 3HZF 1 REMARK
REVDAT 4 06-SEP-23 3HZF 1 REMARK SEQADV LINK
REVDAT 3 13-JUL-11 3HZF 1 VERSN
REVDAT 2 28-JUL-09 3HZF 1 JRNL
REVDAT 1 21-JUL-09 3HZF 0
JRNL AUTH L.BLEICHER,R.APARICIO,F.M.NUNES,L.MARTINEZ,S.M.GOMES DIAS,
JRNL AUTH 2 A.C.FIGUEIRA,M.A.SANTOS,W.H.VENTURELLI,R.DA SILVA,
JRNL AUTH 3 P.M.DONATE,F.A.NEVES,L.A.SIMEONI,J.D.BAXTER,P.WEBB,M.S.SKAF,
JRNL AUTH 4 I.POLIKARPOV
JRNL TITL STRUCTURAL BASIS OF GC-1 SELECTIVITY FOR THYROID HORMONE
JRNL TITL 2 RECEPTOR ISOFORMS.
JRNL REF BMC STRUCT.BIOL. V. 8 8 2008
JRNL REFN ESSN 1472-6807
JRNL PMID 18237438
JRNL DOI 10.1186/1472-6807-8-8
REMARK 2
REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.1.24
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.72
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6
REMARK 3 NUMBER OF REFLECTIONS : 9092
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.192
REMARK 3 R VALUE (WORKING SET) : 0.188
REMARK 3 FREE R VALUE : 0.263
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800
REMARK 3 FREE R VALUE TEST SET COUNT : 459
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57
REMARK 3 REFLECTION IN BIN (WORKING SET) : 603
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : 0.2140
REMARK 3 BIN FREE R VALUE SET COUNT : 31
REMARK 3 BIN FREE R VALUE : 0.3860
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2107
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 24
REMARK 3 SOLVENT ATOMS : 19
REMARK 3
REMARK 3 B VALUES.
REMARK 3 B VALUE TYPE : LIKELY RESIDUAL
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.11
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 3.79000
REMARK 3 B22 (A**2) : -2.55000
REMARK 3 B33 (A**2) : -1.70000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -2.55000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 1.078
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.335
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.234
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.576
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2188 ; 0.018 ; 0.021
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2958 ; 1.813 ; 1.991
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 262 ; 6.844 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 325 ; 0.107 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1632 ; 0.006 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1097 ; 0.241 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 75 ; 0.140 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.220 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.215 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1317 ; 0.739 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2138 ; 1.448 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 871 ; 2.438 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 820 ; 3.864 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 145 A 156
REMARK 3 ORIGIN FOR THE GROUP (A): 6.3285 -29.5671 21.3871
REMARK 3 T TENSOR
REMARK 3 T11: 0.1769 T22: 0.2071
REMARK 3 T33: 0.2504 T12: -0.0636
REMARK 3 T13: 0.0465 T23: 0.0330
REMARK 3 L TENSOR
REMARK 3 L11: 15.6367 L22: 10.3339
REMARK 3 L33: 36.3412 L12: -0.4138
REMARK 3 L13: -9.5112 L23: -3.6350
REMARK 3 S TENSOR
REMARK 3 S11: 0.2546 S12: 0.7807 S13: -0.0944
REMARK 3 S21: -0.4338 S22: -0.3527 S23: -0.5088
REMARK 3 S31: -1.8084 S32: 0.0664 S33: 0.0981
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 157 A 407
REMARK 3 ORIGIN FOR THE GROUP (A): 20.8638 1.4126 9.9598
REMARK 3 T TENSOR
REMARK 3 T11: 0.0094 T22: 0.1169
REMARK 3 T33: 0.1002 T12: 0.0325
REMARK 3 T13: 0.0029 T23: -0.0121
REMARK 3 L TENSOR
REMARK 3 L11: 0.8224 L22: 2.9680
REMARK 3 L33: 2.6360 L12: 0.5042
REMARK 3 L13: -0.4737 L23: -0.9782
REMARK 3 S TENSOR
REMARK 3 S11: 0.0061 S12: 0.0648 S13: 0.0078
REMARK 3 S21: -0.0045 S22: 0.0111 S23: 0.0957
REMARK 3 S31: -0.0388 S32: -0.1295 S33: -0.0172
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1 A 1
REMARK 3 ORIGIN FOR THE GROUP (A): 21.1902 9.1492 6.1605
REMARK 3 T TENSOR
REMARK 3 T11: 0.1920 T22: 0.2185
REMARK 3 T33: 0.3497 T12: -0.0359
REMARK 3 T13: -0.0484 T23: -0.0285
REMARK 3 L TENSOR
REMARK 3 L11: 7.6218 L22: -14.8310
REMARK 3 L33: 30.1781 L12: -26.4051
REMARK 3 L13: 10.2200 L23: 33.3419
REMARK 3 S TENSOR
REMARK 3 S11: 1.6561 S12: -0.0957 S13: -1.6179
REMARK 3 S21: 0.7234 S22: -2.1884 S23: -0.3902
REMARK 3 S31: -2.7180 S32: -1.4257 S33: 0.5322
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3HZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-09.
REMARK 100 THE DEPOSITION ID IS D_1000053771.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 25-NOV-03
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.2
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU ULTRAX 18
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : GRAPHITE
REMARK 200 OPTICS : OSMIC CONFOCAL MAX-FLUX
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9092
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500
REMARK 200 RESOLUTION RANGE LOW (A) : 44.720
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6
REMARK 200 DATA REDUNDANCY : 7.200
REMARK 200 R MERGE (I) : 0.07600
REMARK 200 R SYM (I) : 0.07600
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64
REMARK 200 COMPLETENESS FOR SHELL (%) : 83.7
REMARK 200 DATA REDUNDANCY IN SHELL : 7.20
REMARK 200 R MERGE FOR SHELL (I) : 0.36600
REMARK 200 R SYM FOR SHELL (I) : 0.36600
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: AMORE
REMARK 200 STARTING MODEL: 1BSX
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.73
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M SODIUM ACETATE, 100MM SODIUM
REMARK 280 CACODYLATE, PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE
REMARK 280 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.89950
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.38850
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.89950
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.38850
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A 142
REMARK 465 ARG A 143
REMARK 465 GLY A 144
REMARK 465 GLN A 408
REMARK 465 GLU A 409
REMARK 465 VAL A 410
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 GLN A 155 CB CG CD OE1 NE2
REMARK 480 GLN A 187 CB CG CD OE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 CD GLN A 155 N GLN A 156 1.69
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 GLN A 155 CA GLN A 155 CB -0.174
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 GLN A 155 C - N - CA ANGL. DEV. = -36.5 DEGREES
REMARK 500 ASP A 206 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES
REMARK 500 ASP A 211 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES
REMARK 500 ARG A 384 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLN A 155 -165.67 -121.73
REMARK 500 ALA A 180 71.42 33.72
REMARK 500 GLN A 181 -77.98 -55.80
REMARK 500 SER A 183 154.66 -48.70
REMARK 500 HIS A 184 -79.32 -16.03
REMARK 500 GLN A 187 6.56 -62.38
REMARK 500 SER A 199 57.46 -113.89
REMARK 500 ILE A 201 -22.69 -146.05
REMARK 500 LYS A 209 157.31 -47.72
REMARK 500 GLU A 279 -43.06 -131.36
REMARK 500 ASN A 310 55.94 34.95
REMARK 500 MET A 325 52.24 -91.07
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 ALA A 180 GLN A 181 -147.29
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY
REMARK 500
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 500 I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI ANGLE
REMARK 500 GLN A 155 18.31
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B72 A 1
DBREF 3HZF A 148 410 UNP Q59FW3 Q59FW3_HUMAN 135 397
SEQADV 3HZF ALA A 142 UNP Q59FW3 EXPRESSION TAG
SEQADV 3HZF ARG A 143 UNP Q59FW3 EXPRESSION TAG
SEQADV 3HZF GLY A 144 UNP Q59FW3 EXPRESSION TAG
SEQADV 3HZF SER A 145 UNP Q59FW3 EXPRESSION TAG
SEQADV 3HZF HIS A 146 UNP Q59FW3 EXPRESSION TAG
SEQADV 3HZF MET A 147 UNP Q59FW3 EXPRESSION TAG
SEQRES 1 A 269 ALA ARG GLY SER HIS MET GLU GLU MET ILE ARG SER LEU
SEQRES 2 A 269 GLN GLN ARG PRO GLU PRO THR PRO GLU GLU TRP ASP LEU
SEQRES 3 A 269 ILE HIS ILE ALA THR GLU ALA HIS ARG SER THR ASN ALA
SEQRES 4 A 269 GLN GLY SER HIS TRP LYS GLN ARG ARG LYS PHE LEU PRO
SEQRES 5 A 269 ASP ASP ILE GLY GLN SER PRO ILE VAL SER MET PRO ASP
SEQRES 6 A 269 GLY ASP LYS VAL ASP LEU GLU ALA PHE SER GLU PHE THR
SEQRES 7 A 269 LYS ILE ILE THR PRO ALA ILE THR ARG VAL VAL ASP PHE
SEQRES 8 A 269 ALA LYS LYS LEU PRO MET PHE SER GLU LEU PRO CAS GLU
SEQRES 9 A 269 ASP GLN ILE ILE LEU LEU LYS GLY CYS CYS MET GLU ILE
SEQRES 10 A 269 MET SER LEU ARG ALA ALA VAL ARG TYR ASP PRO GLU SER
SEQRES 11 A 269 ASP THR LEU THR LEU SER GLY GLU MET ALA VAL LYS ARG
SEQRES 12 A 269 GLU GLN LEU LYS ASN GLY GLY LEU GLY VAL VAL SER ASP
SEQRES 13 A 269 ALA ILE PHE GLU LEU GLY LYS SER LEU SER ALA PHE ASN
SEQRES 14 A 269 LEU ASP ASP THR GLU VAL ALA LEU LEU GLN ALA VAL LEU
SEQRES 15 A 269 LEU MET SER THR ASP ARG SER GLY LEU LEU CAS VAL ASP
SEQRES 16 A 269 LYS ILE GLU LYS SER GLN GLU ALA TYR LEU LEU ALA PHE
SEQRES 17 A 269 GLU HIS TYR VAL ASN HIS ARG LYS HIS ASN ILE PRO HIS
SEQRES 18 A 269 PHE TRP PRO LYS LEU LEU MET LYS VAL THR ASP LEU ARG
SEQRES 19 A 269 MET ILE GLY ALA CAS HIS ALA SER ARG PHE LEU HIS MET
SEQRES 20 A 269 LYS VAL GLU CAS PRO THR GLU LEU PHE PRO PRO LEU PHE
SEQRES 21 A 269 LEU GLU VAL PHE GLU ASP GLN GLU VAL
MODRES 3HZF CAS A 244 CYS S-(DIMETHYLARSENIC)CYSTEINE
MODRES 3HZF CAS A 334 CYS S-(DIMETHYLARSENIC)CYSTEINE
MODRES 3HZF CAS A 380 CYS S-(DIMETHYLARSENIC)CYSTEINE
MODRES 3HZF CAS A 392 CYS S-(DIMETHYLARSENIC)CYSTEINE
HET CAS A 244 9
HET CAS A 334 9
HET CAS A 380 9
HET CAS A 392 9
HET B72 A 1 24
HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE
HETNAM B72 {4-[4-HYDROXY-3-(1-METHYLETHYL)BENZYL]-3,5-
HETNAM 2 B72 DIMETHYLPHENOXY}ACETIC ACID
FORMUL 1 CAS 4(C5 H12 AS N O2 S)
FORMUL 2 B72 C20 H24 O4
FORMUL 3 HOH *19(H2 O)
HELIX 1 1 SER A 145 SER A 153 1 9
HELIX 2 2 THR A 161 SER A 177 1 17
HELIX 3 3 ASP A 211 LYS A 235 1 25
HELIX 4 4 LEU A 236 GLU A 241 1 6
HELIX 5 5 PRO A 243 VAL A 265 1 23
HELIX 6 6 ARG A 284 GLY A 290 1 7
HELIX 7 7 GLY A 293 SER A 307 1 15
HELIX 8 8 ALA A 308 ASN A 310 5 3
HELIX 9 9 ASP A 312 MET A 325 1 14
HELIX 10 10 CAS A 334 LYS A 357 1 24
HELIX 11 11 HIS A 362 CAS A 392 1 31
HELIX 12 12 PRO A 393 PHE A 397 5 5
HELIX 13 13 PRO A 398 GLU A 406 1 9
SHEET 1 A 2 THR A 273 LEU A 276 0
SHEET 2 A 2 MET A 280 LYS A 283 -1 O MET A 280 N LEU A 276
LINK C PRO A 243 N CAS A 244 1555 1555 1.32
LINK C CAS A 244 N GLU A 245 1555 1555 1.35
LINK C LEU A 333 N CAS A 334 1555 1555 1.33
LINK C CAS A 334 N VAL A 335 1555 1555 1.33
LINK C ALA A 379 N CAS A 380 1555 1555 1.33
LINK C CAS A 380 N HIS A 381 1555 1555 1.33
LINK C GLU A 391 N CAS A 392 1555 1555 1.33
LINK C CAS A 392 N PRO A 393 1555 1555 1.33
SITE 1 AC1 12 ILE A 222 ALA A 225 ARG A 228 MET A 256
SITE 2 AC1 12 MET A 259 LEU A 276 SER A 277 GLY A 290
SITE 3 AC1 12 GLY A 291 LEU A 292 HIS A 381 PHE A 401
CRYST1 89.799 78.777 43.071 90.00 95.17 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011136 0.000000 0.001008 0.00000
SCALE2 0.000000 0.012694 0.000000 0.00000
SCALE3 0.000000 0.000000 0.023312 0.00000