HEADER IMMUNE SYSTEM 23-JUN-09 3HZM TITLE CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO COMPND MOL_ID: 1; COMPND 2 MOLECULE: S73-2 FAB (IGG1K) LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: S73-2 FAB (IGG1K) HEAVY CHAIN; COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 OTHER_DETAILS: ASCITES; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 STRAIN: BALB/C; SOURCE 12 OTHER_DETAILS: ASCITES KEYWDS ANTIBODY, FAB, IGG, CARBOHYDRATE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BROOKS,S.MULLER-LOENNIES,S.N.BORISOVA,L.BRADE,P.KOSMA,T.HIRAMA, AUTHOR 2 C.R.MACKENZIE,H.BRADE,S.V.EVANS REVDAT 4 06-SEP-23 3HZM 1 HETSYN REVDAT 3 29-JUL-20 3HZM 1 COMPND REMARK DBREF HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 02-FEB-10 3HZM 1 JRNL REVDAT 1 12-JAN-10 3HZM 0 JRNL AUTH C.L.BROOKS,S.MULLER-LOENNIES,S.N.BORISOVA,L.BRADE,P.KOSMA, JRNL AUTH 2 T.HIRAMA,C.R.MACKENZIE,H.BRADE,S.V.EVANS JRNL TITL ANTIBODIES RAISED AGAINST CHLAMYDIAL LIPOPOLYSACCHARIDE JRNL TITL 2 ANTIGENS REVEAL CONVERGENCE IN GERMLINE GENE USAGE AND JRNL TITL 3 DIFFERENTIAL EPITOPE RECOGNITION JRNL REF BIOCHEMISTRY V. 49 570 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20000757 JRNL DOI 10.1021/BI9011308 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.4_4 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 44175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6530 - 4.5190 1.00 2881 166 0.1700 0.1750 REMARK 3 2 4.5190 - 3.5940 0.99 2735 162 0.1690 0.2240 REMARK 3 3 3.5940 - 3.1420 0.99 2729 135 0.2010 0.2550 REMARK 3 4 3.1420 - 2.8550 0.99 2681 147 0.2120 0.2490 REMARK 3 5 2.8550 - 2.6510 0.98 2682 130 0.2030 0.2280 REMARK 3 6 2.6510 - 2.4950 0.98 2656 139 0.2080 0.2680 REMARK 3 7 2.4950 - 2.3710 0.98 2627 134 0.2090 0.2700 REMARK 3 8 2.3710 - 2.2670 0.97 2632 126 0.2090 0.3040 REMARK 3 9 2.2670 - 2.1800 0.97 2581 141 0.2010 0.2760 REMARK 3 10 2.1800 - 2.1050 0.96 2582 137 0.2040 0.2780 REMARK 3 11 2.1050 - 2.0390 0.96 2573 123 0.1990 0.2770 REMARK 3 12 2.0390 - 1.9810 0.95 2545 136 0.2080 0.2690 REMARK 3 13 1.9810 - 1.9290 0.95 2555 122 0.2170 0.2760 REMARK 3 14 1.9290 - 1.8820 0.95 2517 155 0.2380 0.2920 REMARK 3 15 1.8820 - 1.8390 0.94 2481 141 0.2600 0.2930 REMARK 3 16 1.8390 - 1.8000 0.93 2499 125 0.3040 0.3680 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 41.15 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39800 REMARK 3 B22 (A**2) : 0.76600 REMARK 3 B33 (A**2) : -0.36900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3506 REMARK 3 ANGLE : 1.374 4765 REMARK 3 CHIRALITY : 0.097 536 REMARK 3 PLANARITY : 0.006 604 REMARK 3 DIHEDRAL : 17.482 1242 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002+ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC BLUE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.1SSI REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44182 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 4.450 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.25 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.2 REMARK 200 STARTING MODEL: PDB ENTRY 1Q9R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, ETHYLENE GLYCOL, ZNCL2, REMARK 280 MGCL2, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.99000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.99000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER B 14 O HOH B 278 1.94 REMARK 500 O SER A 202 O HOH A 334 1.99 REMARK 500 OD2 ASP A 150 O HOH A 238 2.09 REMARK 500 OD2 ASP A 1 O HOH A 257 2.12 REMARK 500 CB LEU A 105 O HOH A 274 2.13 REMARK 500 OH TYR B 100D OD2 ASP B 101 2.13 REMARK 500 OG SER B 14 O HOH B 278 2.18 REMARK 500 ND1 HIS A 188 O HOH A 238 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 237 O HOH B 352 3554 2.06 REMARK 500 O HOH A 237 O HOH B 358 3554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 176 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -36.28 70.04 REMARK 500 SER A 77 74.86 36.80 REMARK 500 ALA A 84 173.52 178.24 REMARK 500 LEU A 94 -140.29 53.78 REMARK 500 ALA B 88 164.80 176.42 REMARK 500 ASP B 95 -156.52 -105.74 REMARK 500 GLN B 131 49.20 -67.44 REMARK 500 ASN B 132 163.02 146.94 REMARK 500 SER B 133 -87.23 123.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 132 SER B 133 146.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 214 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 55 OE2 REMARK 620 2 HOH A 341 O 71.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 216 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 137 ND2 REMARK 620 2 HOH A 242 O 81.4 REMARK 620 3 HOH A 277 O 166.0 85.1 REMARK 620 4 HOH A 335 O 86.3 158.1 105.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HZK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO(2.4) REMARK 900 KDO REMARK 900 RELATED ID: 3HZV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO(2.8) REMARK 900 KDO(2.4)KDO REMARK 900 RELATED ID: 3HZY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO(2.4) REMARK 900 KDO(2.4)KDO REMARK 900 RELATED ID: 3I02 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HOMOLOGOUS S54-10 ANTIBODY IN COMPLEX WITH REMARK 900 ANTIGEN KDO(2.4)KDO(2.4)KDO DBREF 3HZM A 1 213 PDB 3HZM 3HZM 1 213 DBREF 3HZM B 1 212 PDB 3HZM 3HZM 1 212 SEQRES 1 A 219 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 A 219 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 A 219 GLN SER LEU LEU ASN SER ARG THR ARG LYS ASN TYR LEU SEQRES 4 A 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 A 219 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 219 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 219 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS SER ILE ALA VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP LYS LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 225 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 225 SER GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 B 225 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 B 225 PRO PRO GLY LYS ALA LEU GLU TRP LEU ALA PHE ILE ARG SEQRES 5 B 225 ASN LYS ALA LYS GLY TYR THR THR GLU TYR SER SER SER SEQRES 6 B 225 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 B 225 SER PHE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 B 225 ASP SER ALA THR TYR TYR CYS ALA ARG ASP ILE ASN PRO SEQRES 9 B 225 GLY SER ASP GLY TYR TYR ASP ALA LEU ASP TYR TRP GLY SEQRES 10 B 225 GLN GLY THR SER VAL THR VAL SER ARG ALA LYS THR THR SEQRES 11 B 225 PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SER ALA ALA SEQRES 12 B 225 GLN ASN SER MET VAL THR LEU GLY CYS LEU VAL LYS GLY SEQRES 13 B 225 TYR PHE PRO GLU PRO VAL THR VAL THR TRP ASN SER GLY SEQRES 14 B 225 SER LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 B 225 GLN SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL SEQRES 16 B 225 PRO SER SER THR TRP PRO SER GLU THR VAL THR CYS ASN SEQRES 17 B 225 VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS SEQRES 18 B 225 ILE VAL PRO ARG HET MG A 214 1 HET MG A 216 1 HET MG A 217 1 HET ZN B 215 1 HET KDO B 303 16 HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID FORMUL 3 MG 3(MG 2+) FORMUL 6 ZN ZN 2+ FORMUL 7 KDO C8 H14 O8 FORMUL 8 HOH *278(H2 O) HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 SER A 120 SER A 126 1 7 HELIX 3 3 LYS A 182 GLU A 186 1 5 HELIX 4 4 THR B 28 TYR B 32 5 5 HELIX 5 5 ARG B 83 SER B 87 5 5 HELIX 6 6 SER B 155 SER B 157 5 3 HELIX 7 7 SER B 185 TRP B 187 5 3 HELIX 8 8 PRO B 199 SER B 202 5 4 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 SER A 25 -1 O SER A 22 N SER A 7 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O ILE A 75 N VAL A 19 SHEET 4 A 4 PHE A 62 SER A 67 -1 N THR A 63 O THR A 74 SHEET 1 B 6 SER A 10 SER A 14 0 SHEET 2 B 6 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LYS A 45 N GLN A 37 SHEET 6 B 6 THR A 53 ARG A 54 -1 O THR A 53 N TYR A 49 SHEET 1 C 4 SER A 10 SER A 14 0 SHEET 2 C 4 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 C 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 C 4 THR A 96 PHE A 97 -1 O THR A 96 N GLN A 90 SHEET 1 D 2 LEU A 27C ASN A 27D 0 SHEET 2 D 2 LYS A 30 ASN A 31 -1 O LYS A 30 N ASN A 27D SHEET 1 E 4 THR A 113 PHE A 117 0 SHEET 2 E 4 GLY A 128 PHE A 138 -1 O ASN A 136 N THR A 113 SHEET 3 E 4 TYR A 172 THR A 181 -1 O MET A 174 N LEU A 135 SHEET 4 E 4 VAL A 158 TRP A 162 -1 N LEU A 159 O THR A 177 SHEET 1 F 4 SER A 152 ARG A 154 0 SHEET 2 F 4 ALA A 144 ILE A 149 -1 N ILE A 149 O SER A 152 SHEET 3 F 4 SER A 190 THR A 196 -1 O THR A 196 N ALA A 144 SHEET 4 F 4 ILE A 204 ASN A 209 -1 O ILE A 204 N ALA A 195 SHEET 1 G 4 LYS B 3 SER B 7 0 SHEET 2 G 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 G 4 PHE B 77 MET B 82 -1 O LEU B 80 N LEU B 20 SHEET 4 G 4 PHE B 67 ASP B 72 -1 N SER B 70 O TYR B 79 SHEET 1 H 6 LEU B 11 VAL B 12 0 SHEET 2 H 6 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 H 6 ALA B 88 ARG B 94 -1 N TYR B 90 O THR B 107 SHEET 4 H 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 H 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 H 6 THR B 57 TYR B 59 -1 O GLU B 58 N PHE B 50 SHEET 1 I 4 LEU B 11 VAL B 12 0 SHEET 2 I 4 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 I 4 ALA B 88 ARG B 94 -1 N TYR B 90 O THR B 107 SHEET 4 I 4 TYR B 102 TRP B 103 -1 O TYR B 102 N ARG B 94 SHEET 1 J 4 SER B 120 LEU B 124 0 SHEET 2 J 4 MET B 134 TYR B 144 -1 O LYS B 142 N SER B 120 SHEET 3 J 4 LEU B 173 PRO B 183 -1 O TYR B 174 N TYR B 144 SHEET 4 J 4 VAL B 162 THR B 164 -1 N HIS B 163 O SER B 179 SHEET 1 K 4 SER B 120 LEU B 124 0 SHEET 2 K 4 MET B 134 TYR B 144 -1 O LYS B 142 N SER B 120 SHEET 3 K 4 LEU B 173 PRO B 183 -1 O TYR B 174 N TYR B 144 SHEET 4 K 4 VAL B 168 GLN B 170 -1 N GLN B 170 O LEU B 173 SHEET 1 L 3 THR B 150 TRP B 153 0 SHEET 2 L 3 THR B 193 HIS B 198 -1 O ASN B 195 N THR B 152 SHEET 3 L 3 THR B 203 LYS B 208 -1 O VAL B 205 N VAL B 196 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.05 SSBOND 2 CYS A 133 CYS A 193 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.02 SSBOND 4 CYS B 139 CYS B 194 1555 1555 2.05 LINK OE2 GLU A 55 MG MG A 214 1555 1555 2.50 LINK ND2 ASN A 137 MG MG A 216 1555 1555 2.21 LINK MG MG A 214 O HOH A 341 1555 1555 2.83 LINK MG MG A 216 O HOH A 242 1555 1555 2.18 LINK MG MG A 216 O HOH A 277 1555 1555 2.04 LINK MG MG A 216 O HOH A 335 1555 1555 2.58 LINK OE2 GLU B 58 ZN ZN B 215 1555 1555 1.99 CISPEP 1 SER A 7 PRO A 8 0 -7.35 CISPEP 2 TYR A 139 PRO A 140 0 4.40 CISPEP 3 PHE B 145 PRO B 146 0 -3.14 CISPEP 4 GLU B 147 PRO B 148 0 0.25 CISPEP 5 TRP B 187 PRO B 188 0 9.37 CRYST1 46.000 81.800 127.980 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007814 0.00000