HEADER HYDROLASE 23-JUN-09 3HZO TITLE RV0554 FROM MYCOBACTERIUM TUBERCULOSIS - THE STRUCTURE SOLVED FROM THE TITLE 2 TETRAGONAL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN RV0554, PUTATIVE BROMOPEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POSSIBLE PEROXIDASE BPOC (NON-HAEM PEROXIDASE); COMPND 5 EC: 1.11.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: BPOC, MT0580, RV0554; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, OXIDOREDUCTASE, PEROXIDASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.JOHNSTON,E.N.BAKER REVDAT 5 21-FEB-24 3HZO 1 REMARK SEQADV LINK REVDAT 4 01-NOV-17 3HZO 1 REMARK REVDAT 3 29-APR-15 3HZO 1 HETSYN VERSN REVDAT 2 22-DEC-10 3HZO 1 REMARK REVDAT 1 02-JUN-10 3HZO 0 JRNL AUTH J.M.JOHNSTON,E.N.BAKER JRNL TITL THE STRUCTURE OF RV0554 FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 21496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1099 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1138 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4101 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.540 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.282 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.310 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4209 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5731 ; 1.921 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 6.359 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;34.864 ;23.212 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 628 ;17.329 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;19.486 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 637 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3296 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2671 ; 0.975 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4285 ; 1.913 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1538 ; 3.313 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1446 ; 5.384 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3HZO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21551 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4440 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.1, MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 95% (0.1 M NAAC PH 4.92, 5% MPD, 10% REMARK 280 ETHYLENE GLYCOL) AND 5 % TASCIMATE PH8.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.55600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.38950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.38950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.77800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.38950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.38950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.33400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.38950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.38950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.77800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.38950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.38950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 101.33400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.55600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -30 REMARK 465 SER A -29 REMARK 465 TYR A -28 REMARK 465 TYR A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 ASP A -20 REMARK 465 TYR A -19 REMARK 465 ASP A -18 REMARK 465 ILE A -17 REMARK 465 PRO A -16 REMARK 465 THR A -15 REMARK 465 THR A -14 REMARK 465 ALA A 262 REMARK 465 MET B -30 REMARK 465 SER B -29 REMARK 465 TYR B -28 REMARK 465 TYR B -27 REMARK 465 HIS B -26 REMARK 465 HIS B -25 REMARK 465 HIS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 ASP B -20 REMARK 465 TYR B -19 REMARK 465 ASP B -18 REMARK 465 ILE B -17 REMARK 465 PRO B -16 REMARK 465 THR B -15 REMARK 465 THR B -14 REMARK 465 GLU B -13 REMARK 465 ASN B -12 REMARK 465 LEU B -11 REMARK 465 TYR B -10 REMARK 465 PHE B -9 REMARK 465 GLN B -8 REMARK 465 GLY B -7 REMARK 465 ALA B -6 REMARK 465 MET B -5 REMARK 465 ASP B -4 REMARK 465 PRO B -3 REMARK 465 GLU B -2 REMARK 465 PHE B -1 REMARK 465 ARG B 0 REMARK 465 VAL B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 186 CB CYS A 186 SG 0.102 REMARK 500 GLU B 247 CG GLU B 247 CD 0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A -4 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 PRO B 216 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 32 -61.23 -92.33 REMARK 500 ASN A 48 155.17 -48.13 REMARK 500 SER A 87 -123.63 66.64 REMARK 500 ALA A 100 53.71 -140.60 REMARK 500 ASP A 117 -169.15 -75.62 REMARK 500 LEU A 240 37.05 -87.71 REMARK 500 ASN B 48 156.61 -43.68 REMARK 500 SER B 87 -114.28 61.73 REMARK 500 ALA B 100 54.62 -144.08 REMARK 500 MET B 168 -32.67 -39.44 REMARK 500 LEU B 240 42.69 -102.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 265 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 223 O REMARK 620 2 LEU A 226 O 79.9 REMARK 620 3 GLY A 229 O 73.0 90.5 REMARK 620 4 HOH A 336 O 139.3 104.6 66.6 REMARK 620 5 HOH A 337 O 80.0 153.4 67.1 80.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA B 5188 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HSS RELATED DB: PDB REMARK 900 RELATED ID: 3E3A RELATED DB: PDB REMARK 900 RELATED ID: 3HYS RELATED DB: PDB DBREF 3HZO A 2 262 UNP O06420 O06420_MYCTU 2 262 DBREF 3HZO B 2 262 UNP O06420 O06420_MYCTU 2 262 SEQADV 3HZO MET A -30 UNP O06420 EXPRESSION TAG SEQADV 3HZO SER A -29 UNP O06420 EXPRESSION TAG SEQADV 3HZO TYR A -28 UNP O06420 EXPRESSION TAG SEQADV 3HZO TYR A -27 UNP O06420 EXPRESSION TAG SEQADV 3HZO HIS A -26 UNP O06420 EXPRESSION TAG SEQADV 3HZO HIS A -25 UNP O06420 EXPRESSION TAG SEQADV 3HZO HIS A -24 UNP O06420 EXPRESSION TAG SEQADV 3HZO HIS A -23 UNP O06420 EXPRESSION TAG SEQADV 3HZO HIS A -22 UNP O06420 EXPRESSION TAG SEQADV 3HZO HIS A -21 UNP O06420 EXPRESSION TAG SEQADV 3HZO ASP A -20 UNP O06420 EXPRESSION TAG SEQADV 3HZO TYR A -19 UNP O06420 EXPRESSION TAG SEQADV 3HZO ASP A -18 UNP O06420 EXPRESSION TAG SEQADV 3HZO ILE A -17 UNP O06420 EXPRESSION TAG SEQADV 3HZO PRO A -16 UNP O06420 EXPRESSION TAG SEQADV 3HZO THR A -15 UNP O06420 EXPRESSION TAG SEQADV 3HZO THR A -14 UNP O06420 EXPRESSION TAG SEQADV 3HZO GLU A -13 UNP O06420 EXPRESSION TAG SEQADV 3HZO ASN A -12 UNP O06420 EXPRESSION TAG SEQADV 3HZO LEU A -11 UNP O06420 EXPRESSION TAG SEQADV 3HZO TYR A -10 UNP O06420 EXPRESSION TAG SEQADV 3HZO PHE A -9 UNP O06420 EXPRESSION TAG SEQADV 3HZO GLN A -8 UNP O06420 EXPRESSION TAG SEQADV 3HZO GLY A -7 UNP O06420 EXPRESSION TAG SEQADV 3HZO ALA A -6 UNP O06420 EXPRESSION TAG SEQADV 3HZO MET A -5 UNP O06420 EXPRESSION TAG SEQADV 3HZO ASP A -4 UNP O06420 EXPRESSION TAG SEQADV 3HZO PRO A -3 UNP O06420 EXPRESSION TAG SEQADV 3HZO GLU A -2 UNP O06420 EXPRESSION TAG SEQADV 3HZO PHE A -1 UNP O06420 EXPRESSION TAG SEQADV 3HZO ARG A 0 UNP O06420 EXPRESSION TAG SEQADV 3HZO VAL A 1 UNP O06420 EXPRESSION TAG SEQADV 3HZO MET B -30 UNP O06420 EXPRESSION TAG SEQADV 3HZO SER B -29 UNP O06420 EXPRESSION TAG SEQADV 3HZO TYR B -28 UNP O06420 EXPRESSION TAG SEQADV 3HZO TYR B -27 UNP O06420 EXPRESSION TAG SEQADV 3HZO HIS B -26 UNP O06420 EXPRESSION TAG SEQADV 3HZO HIS B -25 UNP O06420 EXPRESSION TAG SEQADV 3HZO HIS B -24 UNP O06420 EXPRESSION TAG SEQADV 3HZO HIS B -23 UNP O06420 EXPRESSION TAG SEQADV 3HZO HIS B -22 UNP O06420 EXPRESSION TAG SEQADV 3HZO HIS B -21 UNP O06420 EXPRESSION TAG SEQADV 3HZO ASP B -20 UNP O06420 EXPRESSION TAG SEQADV 3HZO TYR B -19 UNP O06420 EXPRESSION TAG SEQADV 3HZO ASP B -18 UNP O06420 EXPRESSION TAG SEQADV 3HZO ILE B -17 UNP O06420 EXPRESSION TAG SEQADV 3HZO PRO B -16 UNP O06420 EXPRESSION TAG SEQADV 3HZO THR B -15 UNP O06420 EXPRESSION TAG SEQADV 3HZO THR B -14 UNP O06420 EXPRESSION TAG SEQADV 3HZO GLU B -13 UNP O06420 EXPRESSION TAG SEQADV 3HZO ASN B -12 UNP O06420 EXPRESSION TAG SEQADV 3HZO LEU B -11 UNP O06420 EXPRESSION TAG SEQADV 3HZO TYR B -10 UNP O06420 EXPRESSION TAG SEQADV 3HZO PHE B -9 UNP O06420 EXPRESSION TAG SEQADV 3HZO GLN B -8 UNP O06420 EXPRESSION TAG SEQADV 3HZO GLY B -7 UNP O06420 EXPRESSION TAG SEQADV 3HZO ALA B -6 UNP O06420 EXPRESSION TAG SEQADV 3HZO MET B -5 UNP O06420 EXPRESSION TAG SEQADV 3HZO ASP B -4 UNP O06420 EXPRESSION TAG SEQADV 3HZO PRO B -3 UNP O06420 EXPRESSION TAG SEQADV 3HZO GLU B -2 UNP O06420 EXPRESSION TAG SEQADV 3HZO PHE B -1 UNP O06420 EXPRESSION TAG SEQADV 3HZO ARG B 0 UNP O06420 EXPRESSION TAG SEQADV 3HZO VAL B 1 UNP O06420 EXPRESSION TAG SEQRES 1 A 293 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 293 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 293 ASP PRO GLU PHE ARG VAL ILE ASN LEU ALA TYR ASP ASP SEQRES 4 A 293 ASN GLY THR GLY ASP PRO VAL VAL PHE ILE ALA GLY ARG SEQRES 5 A 293 GLY GLY ALA GLY ARG THR TRP HIS PRO HIS GLN VAL PRO SEQRES 6 A 293 ALA PHE LEU ALA ALA GLY TYR ARG CYS ILE THR PHE ASP SEQRES 7 A 293 ASN ARG GLY ILE GLY ALA THR GLU ASN ALA GLU GLY PHE SEQRES 8 A 293 THR THR GLN THR MET VAL ALA ASP THR ALA ALA LEU ILE SEQRES 9 A 293 GLU THR LEU ASP ILE ALA PRO ALA ARG VAL VAL GLY VAL SEQRES 10 A 293 SER MET GLY ALA PHE ILE ALA GLN GLU LEU MET VAL VAL SEQRES 11 A 293 ALA PRO GLU LEU VAL SER SER ALA VAL LEU MET ALA THR SEQRES 12 A 293 ARG GLY ARG LEU ASP ARG ALA ARG GLN PHE PHE ASN LYS SEQRES 13 A 293 ALA GLU ALA GLU LEU TYR ASP SER GLY VAL GLN LEU PRO SEQRES 14 A 293 PRO THR TYR ASP ALA ARG ALA ARG LEU LEU GLU ASN PHE SEQRES 15 A 293 SER ARG LYS THR LEU ASN ASP ASP VAL ALA VAL GLY ASP SEQRES 16 A 293 TRP ILE ALA MET PHE SER MET TRP PRO ILE LYS SER THR SEQRES 17 A 293 PRO GLY LEU ARG CYS GLN LEU ASP CYS ALA PRO GLN THR SEQRES 18 A 293 ASN ARG LEU PRO ALA TYR ARG ASN ILE ALA ALA PRO VAL SEQRES 19 A 293 LEU VAL ILE GLY PHE ALA ASP ASP VAL VAL THR PRO PRO SEQRES 20 A 293 TYR LEU GLY ARG GLU VAL ALA ASP ALA LEU PRO ASN GLY SEQRES 21 A 293 ARG TYR LEU GLN ILE PRO ASP ALA GLY HIS LEU GLY PHE SEQRES 22 A 293 PHE GLU ARG PRO GLU ALA VAL ASN THR ALA MET LEU LYS SEQRES 23 A 293 PHE PHE ALA SER VAL LYS ALA SEQRES 1 B 293 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 B 293 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 B 293 ASP PRO GLU PHE ARG VAL ILE ASN LEU ALA TYR ASP ASP SEQRES 4 B 293 ASN GLY THR GLY ASP PRO VAL VAL PHE ILE ALA GLY ARG SEQRES 5 B 293 GLY GLY ALA GLY ARG THR TRP HIS PRO HIS GLN VAL PRO SEQRES 6 B 293 ALA PHE LEU ALA ALA GLY TYR ARG CYS ILE THR PHE ASP SEQRES 7 B 293 ASN ARG GLY ILE GLY ALA THR GLU ASN ALA GLU GLY PHE SEQRES 8 B 293 THR THR GLN THR MET VAL ALA ASP THR ALA ALA LEU ILE SEQRES 9 B 293 GLU THR LEU ASP ILE ALA PRO ALA ARG VAL VAL GLY VAL SEQRES 10 B 293 SER MET GLY ALA PHE ILE ALA GLN GLU LEU MET VAL VAL SEQRES 11 B 293 ALA PRO GLU LEU VAL SER SER ALA VAL LEU MET ALA THR SEQRES 12 B 293 ARG GLY ARG LEU ASP ARG ALA ARG GLN PHE PHE ASN LYS SEQRES 13 B 293 ALA GLU ALA GLU LEU TYR ASP SER GLY VAL GLN LEU PRO SEQRES 14 B 293 PRO THR TYR ASP ALA ARG ALA ARG LEU LEU GLU ASN PHE SEQRES 15 B 293 SER ARG LYS THR LEU ASN ASP ASP VAL ALA VAL GLY ASP SEQRES 16 B 293 TRP ILE ALA MET PHE SER MET TRP PRO ILE LYS SER THR SEQRES 17 B 293 PRO GLY LEU ARG CYS GLN LEU ASP CYS ALA PRO GLN THR SEQRES 18 B 293 ASN ARG LEU PRO ALA TYR ARG ASN ILE ALA ALA PRO VAL SEQRES 19 B 293 LEU VAL ILE GLY PHE ALA ASP ASP VAL VAL THR PRO PRO SEQRES 20 B 293 TYR LEU GLY ARG GLU VAL ALA ASP ALA LEU PRO ASN GLY SEQRES 21 B 293 ARG TYR LEU GLN ILE PRO ASP ALA GLY HIS LEU GLY PHE SEQRES 22 B 293 PHE GLU ARG PRO GLU ALA VAL ASN THR ALA MET LEU LYS SEQRES 23 B 293 PHE PHE ALA SER VAL LYS ALA HET EDO A 263 4 HET EDO A 264 4 HET NA A 265 1 HET MLA B5188 7 HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM MLA MALONIC ACID HETSYN EDO ETHYLENE GLYCOL HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 NA NA 1+ FORMUL 6 MLA C3 H4 O4 FORMUL 7 HOH *260(H2 O) HELIX 1 1 ALA A 24 HIS A 29 5 6 HELIX 2 2 GLN A 32 ALA A 39 1 8 HELIX 3 3 ILE A 51 GLU A 55 5 5 HELIX 4 4 THR A 61 ASP A 77 1 17 HELIX 5 5 SER A 87 ALA A 100 1 14 HELIX 6 6 ASP A 117 GLY A 134 1 18 HELIX 7 7 PRO A 138 PHE A 151 1 14 HELIX 8 8 SER A 152 ASN A 157 1 6 HELIX 9 9 ASP A 158 TRP A 172 1 15 HELIX 10 10 THR A 177 LEU A 184 1 8 HELIX 11 11 LEU A 193 ILE A 199 5 7 HELIX 12 12 PRO A 215 LEU A 226 1 12 HELIX 13 13 LEU A 240 ARG A 245 1 6 HELIX 14 14 ARG A 245 VAL A 260 1 16 HELIX 15 15 ALA B 24 HIS B 29 5 6 HELIX 16 16 GLN B 32 ALA B 39 1 8 HELIX 17 17 ILE B 51 GLU B 55 5 5 HELIX 18 18 THR B 61 LEU B 76 1 16 HELIX 19 19 SER B 87 ALA B 100 1 14 HELIX 20 20 ASP B 117 SER B 133 1 17 HELIX 21 21 PRO B 138 PHE B 151 1 14 HELIX 22 22 SER B 152 ASN B 157 1 6 HELIX 23 23 ASP B 158 TRP B 172 1 15 HELIX 24 24 THR B 177 LEU B 184 1 8 HELIX 25 25 ARG B 192 ARG B 197 1 6 HELIX 26 26 PRO B 215 LEU B 226 1 12 HELIX 27 27 LEU B 240 ARG B 245 1 6 HELIX 28 28 ARG B 245 ALA B 258 1 14 SHEET 1 A 8 LEU A -11 MET A -5 0 SHEET 2 A 8 VAL A 1 ASN A 9 -1 O ILE A 2 N GLY A -7 SHEET 3 A 8 TYR A 41 PHE A 46 -1 O THR A 45 N ASP A 7 SHEET 4 A 8 ASP A 13 ILE A 18 1 N VAL A 15 O ARG A 42 SHEET 5 A 8 ALA A 81 VAL A 86 1 O ARG A 82 N VAL A 16 SHEET 6 A 8 VAL A 104 MET A 110 1 O MET A 110 N GLY A 85 SHEET 7 A 8 VAL A 203 PHE A 208 1 O ILE A 206 N LEU A 109 SHEET 8 A 8 GLY A 229 ILE A 234 1 O ARG A 230 N VAL A 205 SHEET 1 B 7 TYR B 6 ASN B 9 0 SHEET 2 B 7 ARG B 42 PHE B 46 -1 O THR B 45 N ASP B 7 SHEET 3 B 7 PRO B 14 ILE B 18 1 N VAL B 15 O ARG B 42 SHEET 4 B 7 ALA B 81 VAL B 86 1 O VAL B 84 N ILE B 18 SHEET 5 B 7 VAL B 104 MET B 110 1 O VAL B 108 N GLY B 85 SHEET 6 B 7 VAL B 203 PHE B 208 1 O LEU B 204 N LEU B 109 SHEET 7 B 7 GLY B 229 ILE B 234 1 O LEU B 232 N VAL B 205 LINK O ALA A 223 NA NA A 265 1555 1555 2.55 LINK O LEU A 226 NA NA A 265 1555 1555 2.45 LINK O GLY A 229 NA NA A 265 1555 1555 3.04 LINK NA NA A 265 O HOH A 336 1555 1555 2.20 LINK NA NA A 265 O HOH A 337 1555 1555 2.73 CISPEP 1 ALA A 79 PRO A 80 0 -2.78 CISPEP 2 ALA B 79 PRO B 80 0 -8.40 SITE 1 AC1 5 TYR A 6 ASP A 7 THR A 45 PHE A 46 SITE 2 AC1 5 ASP A 47 SITE 1 AC2 6 PHE A 46 ASN A 48 ARG A 49 MET A 65 SITE 2 AC2 6 ASP A 68 THR A 69 SITE 1 AC3 6 ALA A 223 ASP A 224 LEU A 226 GLY A 229 SITE 2 AC3 6 HOH A 336 HOH A 337 SITE 1 AC4 9 ARG B 21 SER B 87 MET B 88 ARG B 120 SITE 2 AC4 9 PHE B 123 HIS B 239 HOH B 277 HOH B 278 SITE 3 AC4 9 HOH B 279 CRYST1 100.779 100.779 135.112 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009923 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007401 0.00000