HEADER TRANSFERASE 24-JUN-09 3HZT TITLE CRYSTAL STRUCTURE OF TOXOPLASMA GONDII CDPK3, TGME49_105860 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-DEPENDENT PROTEIN KINASE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 72-537; COMPND 5 EC: 2.7.11.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 508771; SOURCE 4 STRAIN: ME49; SOURCE 5 GENE: TGME49_105860; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15_MHL KEYWDS CALCIUM DEPENDENT KINASE, CALMODULIN, TROPONIN PARASITE, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, ATP-BINDING, KINASE, KEYWDS 3 NUCLEOTIDE-BINDING, SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,J.D.ARTZ,P.FINNERTY,G.WASNEY,A.ALLALI-HASSANI,M.VEDADI, AUTHOR 2 A.BOCHKAREV,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,R.HUI, AUTHOR 3 M.AMANI,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 06-SEP-23 3HZT 1 REMARK SEQADV LINK REVDAT 5 01-NOV-17 3HZT 1 REMARK REVDAT 4 13-JUL-11 3HZT 1 VERSN REVDAT 3 19-MAY-10 3HZT 1 REVDAT 2 12-MAY-10 3HZT 1 JRNL REVDAT 1 21-JUL-09 3HZT 0 JRNL AUTH A.K.WERNIMONT,J.D.ARTZ,P.FINERTY,Y.H.LIN,M.AMANI, JRNL AUTH 2 A.ALLALI-HASSANI,G.SENISTERRA,M.VEDADI,W.TEMPEL,F.MACKENZIE, JRNL AUTH 3 I.CHAU,S.LOURIDO,L.D.SIBLEY,R.HUI JRNL TITL STRUCTURES OF APICOMPLEXAN CALCIUM-DEPENDENT PROTEIN KINASES JRNL TITL 2 REVEAL MECHANISM OF ACTIVATION BY CALCIUM. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 596 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20436473 JRNL DOI 10.1038/NSMB.1795 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 35380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1770 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2320 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3263 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.13000 REMARK 3 B22 (A**2) : -1.12000 REMARK 3 B33 (A**2) : -2.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.157 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3505 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4727 ; 1.141 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 449 ; 5.112 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;33.486 ;24.487 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;15.938 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.539 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2593 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2131 ; 0.646 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3402 ; 1.208 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1374 ; 1.796 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1308 ; 2.883 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. U VALUES: REFINED INDIVIDUALLY. REMARK 4 REMARK 4 3HZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35409 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.03300 REMARK 200 FOR THE DATA SET : 26.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : 0.36900 REMARK 200 FOR SHELL : 2.686 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3DXN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 0.2 M KF, 3 MM SU11652, REMARK 280 GLYCEROL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.88050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 71 REMARK 465 LEU A 72 REMARK 465 GLY A 230 REMARK 465 GLY A 231 REMARK 465 LYS A 232 REMARK 465 MET A 233 REMARK 465 LYS A 234 REMARK 465 GLU A 235 REMARK 465 ARG A 236 REMARK 465 LEU A 237 REMARK 465 LYS A 340 REMARK 465 HIS A 341 REMARK 465 THR A 342 REMARK 465 ASP A 343 REMARK 465 LYS A 417 REMARK 465 GLY A 418 REMARK 465 ASP A 419 REMARK 465 THR A 420 REMARK 465 VAL A 421 REMARK 465 SER A 422 REMARK 465 ASP A 423 REMARK 465 LEU A 424 REMARK 465 ASP A 425 REMARK 465 ASP A 443 REMARK 465 VAL A 498 REMARK 465 ASP A 499 REMARK 465 ASP A 500 REMARK 465 GLU A 501 REMARK 465 THR A 502 REMARK 465 TRP A 503 REMARK 465 HIS A 504 REMARK 465 GLN A 505 REMARK 465 VAL A 506 REMARK 465 LEU A 507 REMARK 465 GLN A 508 REMARK 465 GLU A 509 REMARK 465 CYS A 510 REMARK 465 ASP A 511 REMARK 465 LYS A 512 REMARK 465 ASN A 513 REMARK 465 ASN A 514 REMARK 465 ASP A 515 REMARK 465 LYS A 534 REMARK 465 VAL A 535 REMARK 465 LYS A 536 REMARK 465 HIS A 537 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 73 OG REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 VAL A 344 CG1 CG2 REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 LYS A 376 CD CE NZ REMARK 470 LEU A 380 CG CD1 CD2 REMARK 470 GLN A 388 CD OE1 NE2 REMARK 470 GLN A 392 CG CD OE1 NE2 REMARK 470 LYS A 404 CG CD CE NZ REMARK 470 GLU A 408 CG CD OE1 OE2 REMARK 470 GLN A 415 CG CD OE1 NE2 REMARK 470 SER A 426 OG REMARK 470 SER A 427 OG REMARK 470 GLN A 428 CG CD OE1 NE2 REMARK 470 ILE A 429 CG1 CG2 CD1 REMARK 470 GLU A 430 CG CD OE1 OE2 REMARK 470 GLU A 432 CG CD OE1 OE2 REMARK 470 VAL A 433 CG1 CG2 REMARK 470 ASP A 434 CG OD1 OD2 REMARK 470 HIS A 435 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 436 CG1 CG2 CD1 REMARK 470 GLN A 438 CG CD OE1 NE2 REMARK 470 VAL A 440 CG1 CG2 REMARK 470 ASP A 441 CG OD1 OD2 REMARK 470 PHE A 442 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 444 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 463 CG CD1 CD2 REMARK 470 LYS A 483 CG CD CE NZ REMARK 470 VAL A 495 CG1 CG2 REMARK 470 GLU A 497 CG CD OE1 OE2 REMARK 470 GLU A 521 CG CD OE1 OE2 REMARK 470 GLU A 522 CG CD OE1 OE2 REMARK 470 ILE A 530 CG1 CG2 CD1 REMARK 470 VAL A 533 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 12 O HOH A 575 1.88 REMARK 500 O HOH A 573 O HOH A 583 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 -157.14 -153.21 REMARK 500 TYR A 87 -15.75 80.37 REMARK 500 SER A 116 -135.35 -128.65 REMARK 500 ARG A 198 -18.95 80.83 REMARK 500 LEU A 223 -0.74 78.55 REMARK 500 ASP A 253 -159.62 -139.84 REMARK 500 PRO A 331 -37.65 -38.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 394 OD1 REMARK 620 2 ASN A 396 OD1 75.5 REMARK 620 3 ASP A 398 OD2 74.4 76.1 REMARK 620 4 GLN A 400 O 89.9 158.1 84.3 REMARK 620 5 TYR A 447 OH 150.7 100.6 76.5 84.0 REMARK 620 6 HOH A 545 O 104.0 118.1 165.1 80.9 103.3 REMARK 620 7 HOH A 546 O 98.3 58.4 134.0 141.6 104.2 60.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 538 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 539 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE J60 A 540 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 541 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 542 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 543 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 544 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HX4 RELATED DB: PDB REMARK 900 CALCIUM-ACTIVATED HOMOLOG DBREF 3HZT A 72 537 UNP B6KR85 B6KR85_TOXGO 72 537 SEQADV 3HZT GLY A 71 UNP B6KR85 EXPRESSION TAG SEQRES 1 A 467 GLY LEU SER ASP ARG TYR GLN ARG VAL LYS LYS LEU GLY SEQRES 2 A 467 SER GLY ALA TYR GLY GLU VAL LEU LEU CYS LYS ASP LYS SEQRES 3 A 467 LEU THR GLY ALA GLU ARG ALA ILE LYS ILE ILE LYS LYS SEQRES 4 A 467 SER SER VAL THR THR THR SER ASN SER GLY ALA LEU LEU SEQRES 5 A 467 ASP GLU VAL ALA VAL LEU LYS GLN LEU ASP HIS PRO ASN SEQRES 6 A 467 ILE MET LYS LEU TYR GLU PHE PHE GLU ASP LYS ARG ASN SEQRES 7 A 467 TYR TYR LEU VAL MET GLU VAL TYR ARG GLY GLY GLU LEU SEQRES 8 A 467 PHE ASP GLU ILE ILE LEU ARG GLN LYS PHE SER GLU VAL SEQRES 9 A 467 ASP ALA ALA VAL ILE MET LYS GLN VAL LEU SER GLY THR SEQRES 10 A 467 THR TYR LEU HIS LYS HIS ASN ILE VAL HIS ARG ASP LEU SEQRES 11 A 467 LYS PRO GLU ASN LEU LEU LEU GLU SER LYS SER ARG ASP SEQRES 12 A 467 ALA LEU ILE LYS ILE VAL ASP PHE GLY LEU SER ALA HIS SEQRES 13 A 467 PHE GLU VAL GLY GLY LYS MET LYS GLU ARG LEU GLY THR SEQRES 14 A 467 ALA TYR TYR ILE ALA PRO GLU VAL LEU ARG LYS LYS TYR SEQRES 15 A 467 ASP GLU LYS CYS ASP VAL TRP SER CYS GLY VAL ILE LEU SEQRES 16 A 467 TYR ILE LEU LEU CYS GLY TYR PRO PRO PHE GLY GLY GLN SEQRES 17 A 467 THR ASP GLN GLU ILE LEU LYS ARG VAL GLU LYS GLY LYS SEQRES 18 A 467 PHE SER PHE ASP PRO PRO ASP TRP THR GLN VAL SER ASP SEQRES 19 A 467 GLU ALA LYS GLN LEU VAL LYS LEU MET LEU THR TYR GLU SEQRES 20 A 467 PRO SER LYS ARG ILE SER ALA GLU GLU ALA LEU ASN HIS SEQRES 21 A 467 PRO TRP ILE VAL LYS PHE CYS SER GLN LYS HIS THR ASP SEQRES 22 A 467 VAL GLY LYS HIS ALA LEU THR GLY ALA LEU GLY ASN MET SEQRES 23 A 467 LYS LYS PHE GLN SER SER GLN LYS LEU ALA GLN ALA ALA SEQRES 24 A 467 MET LEU PHE MET GLY SER LYS LEU THR THR LEU GLU GLU SEQRES 25 A 467 THR LYS GLU LEU THR GLN ILE PHE ARG GLN LEU ASP ASN SEQRES 26 A 467 ASN GLY ASP GLY GLN LEU ASP ARG LYS GLU LEU ILE GLU SEQRES 27 A 467 GLY TYR ARG LYS LEU MET GLN TRP LYS GLY ASP THR VAL SEQRES 28 A 467 SER ASP LEU ASP SER SER GLN ILE GLU ALA GLU VAL ASP SEQRES 29 A 467 HIS ILE LEU GLN SER VAL ASP PHE ASP ARG ASN GLY TYR SEQRES 30 A 467 ILE GLU TYR SER GLU PHE VAL THR VAL CYS MET ASP LYS SEQRES 31 A 467 GLN LEU LEU LEU SER ARG GLU ARG LEU LEU ALA ALA PHE SEQRES 32 A 467 GLN GLN PHE ASP SER ASP GLY SER GLY LYS ILE THR ASN SEQRES 33 A 467 GLU GLU LEU GLY ARG LEU PHE GLY VAL THR GLU VAL ASP SEQRES 34 A 467 ASP GLU THR TRP HIS GLN VAL LEU GLN GLU CYS ASP LYS SEQRES 35 A 467 ASN ASN ASP GLY GLU VAL ASP PHE GLU GLU PHE VAL GLU SEQRES 36 A 467 MET MET GLN LYS ILE CYS ASP VAL LYS VAL LYS HIS HET MG A 601 1 HET GOL A 602 6 HET GOL A 1 6 HET GOL A 538 6 HET GOL A 539 6 HET J60 A 540 29 HET GOL A 541 6 HET GOL A 542 6 HET GOL A 543 6 HET GOL A 544 6 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM J60 5-[(E)-(5-CHLORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE) HETNAM 2 J60 METHYL]-N-[2-(DIETHYLAMINO)ETHYL]-2,4-DIMETHYL-1H- HETNAM 3 J60 PYRROLE-3-CARBOXAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG MG 2+ FORMUL 3 GOL 8(C3 H8 O3) FORMUL 7 J60 C22 H27 CL N4 O2 FORMUL 12 HOH *202(H2 O) HELIX 1 1 SER A 110 VAL A 112 5 3 HELIX 2 2 ASN A 117 LEU A 131 1 15 HELIX 3 3 GLU A 160 ILE A 166 1 7 HELIX 4 4 SER A 172 HIS A 193 1 22 HELIX 5 5 LYS A 201 GLU A 203 5 3 HELIX 6 6 THR A 239 ILE A 243 5 5 HELIX 7 7 ALA A 244 ARG A 249 1 6 HELIX 8 8 GLU A 254 GLY A 271 1 18 HELIX 9 9 THR A 279 GLY A 290 1 12 HELIX 10 10 SER A 303 LEU A 314 1 12 HELIX 11 11 SER A 323 ASN A 329 1 7 HELIX 12 12 HIS A 330 SER A 338 1 9 HELIX 13 13 LEU A 349 ASP A 394 1 46 HELIX 14 14 ARG A 403 TRP A 416 1 14 HELIX 15 15 SER A 426 PHE A 442 1 17 HELIX 16 16 TYR A 450 ASP A 477 1 28 HELIX 17 17 ASN A 486 GLY A 494 1 9 HELIX 18 18 PHE A 520 LYS A 529 1 10 SHEET 1 A 5 TYR A 76 GLY A 85 0 SHEET 2 A 5 GLY A 88 ASP A 95 -1 O LYS A 94 N GLN A 77 SHEET 3 A 5 GLU A 101 LYS A 108 -1 O ILE A 104 N LEU A 91 SHEET 4 A 5 ASN A 148 MET A 153 -1 O MET A 153 N ALA A 103 SHEET 5 A 5 LEU A 139 GLU A 144 -1 N TYR A 140 O VAL A 152 SHEET 1 B 2 THR A 113 THR A 114 0 SHEET 2 B 2 PHE A 227 GLU A 228 -1 O GLU A 228 N THR A 113 SHEET 1 C 2 LEU A 205 LEU A 207 0 SHEET 2 C 2 ILE A 216 ILE A 218 -1 O LYS A 217 N LEU A 206 SHEET 1 D 2 GLN A 400 ASP A 402 0 SHEET 2 D 2 TYR A 447 GLU A 449 -1 O ILE A 448 N LEU A 401 SHEET 1 E 2 LYS A 483 THR A 485 0 SHEET 2 E 2 GLU A 517 ASP A 519 -1 O VAL A 518 N ILE A 484 LINK OD1 ASP A 394 MG MG A 601 1555 1555 2.49 LINK OD1 ASN A 396 MG MG A 601 1555 1555 2.52 LINK OD2 ASP A 398 MG MG A 601 1555 1555 2.34 LINK O GLN A 400 MG MG A 601 1555 1555 2.73 LINK OH TYR A 447 MG MG A 601 1555 1555 2.68 LINK O HOH A 545 MG MG A 601 1555 1555 2.25 LINK O HOH A 546 MG MG A 601 1555 1555 2.88 CISPEP 1 PRO A 296 PRO A 297 0 1.80 SITE 1 AC1 7 ASP A 394 ASN A 396 ASP A 398 GLN A 400 SITE 2 AC1 7 TYR A 447 HOH A 545 HOH A 546 SITE 1 AC2 8 GLU A 124 ASN A 194 ILE A 195 VAL A 196 SITE 2 AC2 8 LEU A 223 SER A 224 ALA A 225 HOH A 580 SITE 1 AC3 7 HOH A 6 LYS A 105 MET A 137 LEU A 151 SITE 2 AC3 7 MET A 153 ASP A 220 PHE A 221 SITE 1 AC4 5 HOH A 11 THR A 114 SER A 116 ASN A 117 SITE 2 AC4 5 HOH A 644 SITE 1 AC5 3 GLY A 119 LEU A 122 ASP A 123 SITE 1 AC6 13 LYS A 81 LEU A 82 ALA A 103 MET A 137 SITE 2 AC6 13 MET A 153 GLU A 154 VAL A 155 TYR A 156 SITE 3 AC6 13 LEU A 206 ASP A 220 ARG A 468 GOL A 541 SITE 4 AC6 13 GOL A 542 SITE 1 AC7 6 HOH A 61 ARG A 157 GLY A 159 LYS A 210 SITE 2 AC7 6 J60 A 540 HOH A 560 SITE 1 AC8 8 HOH A 63 SER A 84 GLU A 160 GLU A 203 SITE 2 AC8 8 LEU A 206 VAL A 219 J60 A 540 HOH A 674 SITE 1 AC9 4 ASP A 253 GLU A 254 LYS A 255 HOH A 570 SITE 1 BC1 6 TYR A 87 GLY A 88 GLU A 89 ILE A 106 SITE 2 BC1 6 LYS A 108 SER A 111 CRYST1 71.051 43.761 84.821 90.00 96.95 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014074 0.000000 0.001717 0.00000 SCALE2 0.000000 0.022851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011877 0.00000