HEADER LYASE 25-JUN-09 3I0U TITLE STRUCTURE OF THE TYPE III EFFECTOR/PHOSPHOTHREONINE LYASE OSPF FROM TITLE 2 SHIGELLA FLEXNERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTHREONINE LYASE OSPF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: OSPF RESIDUES 23-239; COMPND 5 SYNONYM: EFFECTOR PROTEIN OSPF; COMPND 6 EC: 4.2.3.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 STRAIN: 2A; SOURCE 5 GENE: CP0010, MKAD, OSPF, PWR501_0013, SFLP011; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TVLIC KEYWDS SHIGELLA FLEXNERI, APO-STRUCTURE, TYPE III EFFECTOR, PHOSPHOTHREONINE KEYWDS 2 LYASE, LYASE, SECRETED, VIRULENCE, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR A.U.SINGER,T.SKARINA,B.NOCEK,R.GORDON,R.LAM,O.KAGAN,A.M.EDWARDS, AUTHOR 2 A.JOACHIMIAK,N.Y.CHIRGADZE,W.F.ANDERSON,A.SAVCHENKO,CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 21-FEB-24 3I0U 1 REMARK SEQADV REVDAT 2 13-JUL-11 3I0U 1 VERSN REVDAT 1 01-SEP-09 3I0U 0 JRNL AUTH A.U.SINGER,T.SKARINA,R.LAM,R.GORDON,B.NOCEK,O.KAGAN, JRNL AUTH 2 A.M.EDWARDS,N.Y.CHIRGADZE,C.PARSOT,L.ARBIBE,A.SAVCHENKO JRNL TITL STRUCTURE OF THE TYPE III EFFECTOR/PHOSPHOTHREONINE LYASE JRNL TITL 2 OSPF FROM SHIGELLA FLEXNERI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 673 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 920 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3193 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.782 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.392 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.361 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.746 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3274 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4426 ; 1.713 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 386 ; 6.818 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;35.729 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 551 ;19.711 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;23.590 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 469 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2529 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1304 ; 0.171 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2255 ; 0.304 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 167 ; 0.175 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.205 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.414 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2005 ; 0.431 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3164 ; 0.652 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1438 ; 1.242 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1262 ; 1.732 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 20 A 240 1 REMARK 3 1 B 20 B 240 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1530 ; 0.08 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 1530 ; 0.16 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 239 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5390 16.4774 101.6295 REMARK 3 T TENSOR REMARK 3 T11: -0.4354 T22: -0.1081 REMARK 3 T33: -0.1598 T12: 0.1194 REMARK 3 T13: -0.0684 T23: -0.1814 REMARK 3 L TENSOR REMARK 3 L11: 6.3322 L22: 5.2103 REMARK 3 L33: 6.8950 L12: 0.3704 REMARK 3 L13: -2.6317 L23: 1.6226 REMARK 3 S TENSOR REMARK 3 S11: -0.3270 S12: 0.5802 S13: -0.7317 REMARK 3 S21: -0.0723 S22: 0.1380 S23: -0.2601 REMARK 3 S31: 0.0348 S32: -0.1655 S33: 0.1891 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 239 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6144 46.9178 107.2051 REMARK 3 T TENSOR REMARK 3 T11: -0.3107 T22: 0.0663 REMARK 3 T33: -0.2348 T12: 0.2333 REMARK 3 T13: -0.0013 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.8877 L22: 8.6490 REMARK 3 L33: 6.2956 L12: -0.1257 REMARK 3 L13: 0.3588 L23: 3.8936 REMARK 3 S TENSOR REMARK 3 S11: 0.0981 S12: 0.6480 S13: -0.0079 REMARK 3 S21: 0.0919 S22: 0.2393 S23: -0.5488 REMARK 3 S31: 0.1163 S32: 0.6530 S33: -0.3375 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE MAD DATASET WAS USED TO SOLVE THE STRUCTURE, BUT REMARK 3 THE STRUCTURE WAS REFINED ON A SINGLE WAVELENGTH DATASET REFINED REMARK 3 TO 2.7A REMARK 4 REMARK 4 3I0U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-07; 27-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-ID; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929; 0.97924, 0.97940 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL; NULL REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13771 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 48.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% ISOPROPANOL, 20% PEG4K, 1% PEG6K, REMARK 280 0.5% 2-METHYL-2,4-PENTANEDIOL, 0.1 M HEPES PH 7.5. CRYOPROTECTED REMARK 280 IN PARATONE-N OIL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.79300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.06250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.06250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.89650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.06250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.06250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 179.68950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.06250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.06250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.89650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.06250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.06250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 179.68950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 119.79300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 22 REMARK 465 PRO A 23 REMARK 465 GLN A 24 REMARK 465 MET A 25 REMARK 465 LEU A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 ASN A 29 REMARK 465 GLU A 30 REMARK 465 GLN A 143 REMARK 465 GLN A 144 REMARK 465 SER A 145 REMARK 465 ARG A 146 REMARK 465 ASP A 217 REMARK 465 ARG A 218 REMARK 465 ASP A 219 REMARK 465 GLY A 220 REMARK 465 SER A 221 REMARK 465 GLU A 222 REMARK 465 ARG A 223 REMARK 465 GLN A 224 REMARK 465 GLU A 225 REMARK 465 GLN A 226 REMARK 465 GLY B 22 REMARK 465 PRO B 23 REMARK 465 GLN B 24 REMARK 465 MET B 25 REMARK 465 LEU B 26 REMARK 465 SER B 66 REMARK 465 PHE B 67 REMARK 465 SER B 68 REMARK 465 SER B 94 REMARK 465 LYS B 95 REMARK 465 SER B 216 REMARK 465 ASP B 217 REMARK 465 ARG B 218 REMARK 465 ASP B 219 REMARK 465 GLY B 220 REMARK 465 SER B 221 REMARK 465 GLU B 222 REMARK 465 ARG B 223 REMARK 465 GLN B 224 REMARK 465 GLU B 225 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 470 MET A 227 CG SD CE REMARK 470 LEU A 228 CG CD1 CD2 REMARK 470 HIS B 79 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 ARG B 146 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 GLN B 226 CG CD OE1 NE2 REMARK 470 MET B 227 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 175 O GLU A 239 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 80 OE1 GLN A 165 6455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 180 CB CYS A 180 SG -0.154 REMARK 500 SER B 145 CB SER B 145 OG 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 211 CG - CD - NE ANGL. DEV. = -17.0 DEGREES REMARK 500 ARG A 211 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 211 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 211 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 211 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 66 85.47 -54.58 REMARK 500 MET A 138 -15.61 -40.43 REMARK 500 MET B 138 -19.07 -48.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BO6 RELATED DB: PDB REMARK 900 STRUCTURE OF THE CHROMOBACTERIUM VIOLACEUM VIRA (SPVC) REMARK 900 PHOSPHOTHREONINE LYASE EFFECTOR PROTEIN REMARK 900 RELATED ID: 2P1W RELATED DB: PDB REMARK 900 STRUCTURE OF THE PHOSPHOTHREONINE LYASE SPVC, THE EFFECTOR PROTEIN REMARK 900 FROM SALMONELLA REMARK 900 RELATED ID: 2Z8N RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR THE CATALYTIC MECHANISM OF PHOSPHOTHREONINE REMARK 900 LYASE REMARK 900 RELATED ID: IDP90224 RELATED DB: TARGETDB DBREF 3I0U A 23 239 UNP Q8VSP9 OSPF_SHIFL 23 239 DBREF 3I0U B 23 239 UNP Q8VSP9 OSPF_SHIFL 23 239 SEQADV 3I0U GLY A 22 UNP Q8VSP9 INSERTION SEQADV 3I0U GLY B 22 UNP Q8VSP9 INSERTION SEQRES 1 A 218 GLY PRO GLN MET LEU SER ALA ASN GLU ARG LEU LYS ASN SEQRES 2 A 218 ASN PHE ASN ILE LEU TYR ASN GLN ILE ARG GLN TYR PRO SEQRES 3 A 218 ALA TYR TYR PHE LYS VAL ALA SER ASN VAL PRO THR TYR SEQRES 4 A 218 SER ASP ILE CYS GLN SER PHE SER VAL MET TYR GLN GLY SEQRES 5 A 218 PHE GLN ILE VAL ASN HIS SER GLY ASP VAL PHE ILE HIS SEQRES 6 A 218 ALA CYS ARG GLU ASN PRO GLN SER LYS GLY ASP PHE VAL SEQRES 7 A 218 GLY ASP LYS PHE HIS ILE SER ILE ALA ARG GLU GLN VAL SEQRES 8 A 218 PRO LEU ALA PHE GLN ILE LEU SER GLY LEU LEU PHE SER SEQRES 9 A 218 GLU ASP SER PRO ILE ASP LYS TRP LYS ILE THR ASP MET SEQRES 10 A 218 ASN ARG VAL SER GLN GLN SER ARG VAL GLY ILE GLY ALA SEQRES 11 A 218 GLN PHE THR LEU TYR VAL LYS SER ASP GLN GLU CYS SER SEQRES 12 A 218 GLN TYR SER ALA LEU LEU LEU HIS LYS ILE ARG GLN PHE SEQRES 13 A 218 ILE MET CYS LEU GLU SER ASN LEU LEU ARG SER LYS ILE SEQRES 14 A 218 ALA PRO GLY GLU TYR PRO ALA SER ASP VAL ARG PRO GLU SEQRES 15 A 218 ASP TRP LYS TYR VAL SER TYR ARG ASN GLU LEU ARG SER SEQRES 16 A 218 ASP ARG ASP GLY SER GLU ARG GLN GLU GLN MET LEU ARG SEQRES 17 A 218 GLU GLU PRO PHE TYR ARG LEU MET ILE GLU SEQRES 1 B 218 GLY PRO GLN MET LEU SER ALA ASN GLU ARG LEU LYS ASN SEQRES 2 B 218 ASN PHE ASN ILE LEU TYR ASN GLN ILE ARG GLN TYR PRO SEQRES 3 B 218 ALA TYR TYR PHE LYS VAL ALA SER ASN VAL PRO THR TYR SEQRES 4 B 218 SER ASP ILE CYS GLN SER PHE SER VAL MET TYR GLN GLY SEQRES 5 B 218 PHE GLN ILE VAL ASN HIS SER GLY ASP VAL PHE ILE HIS SEQRES 6 B 218 ALA CYS ARG GLU ASN PRO GLN SER LYS GLY ASP PHE VAL SEQRES 7 B 218 GLY ASP LYS PHE HIS ILE SER ILE ALA ARG GLU GLN VAL SEQRES 8 B 218 PRO LEU ALA PHE GLN ILE LEU SER GLY LEU LEU PHE SER SEQRES 9 B 218 GLU ASP SER PRO ILE ASP LYS TRP LYS ILE THR ASP MET SEQRES 10 B 218 ASN ARG VAL SER GLN GLN SER ARG VAL GLY ILE GLY ALA SEQRES 11 B 218 GLN PHE THR LEU TYR VAL LYS SER ASP GLN GLU CYS SER SEQRES 12 B 218 GLN TYR SER ALA LEU LEU LEU HIS LYS ILE ARG GLN PHE SEQRES 13 B 218 ILE MET CYS LEU GLU SER ASN LEU LEU ARG SER LYS ILE SEQRES 14 B 218 ALA PRO GLY GLU TYR PRO ALA SER ASP VAL ARG PRO GLU SEQRES 15 B 218 ASP TRP LYS TYR VAL SER TYR ARG ASN GLU LEU ARG SER SEQRES 16 B 218 ASP ARG ASP GLY SER GLU ARG GLN GLU GLN MET LEU ARG SEQRES 17 B 218 GLU GLU PRO PHE TYR ARG LEU MET ILE GLU HET MPD A 1 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 MPD C6 H14 O2 FORMUL 4 HOH *6(H2 O) HELIX 1 1 ARG A 31 ARG A 44 1 14 HELIX 2 2 THR A 59 SER A 66 1 8 HELIX 3 3 ALA A 108 GLU A 110 5 3 HELIX 4 4 GLN A 111 PHE A 124 1 14 HELIX 5 5 SER A 167 SER A 188 1 22 HELIX 6 6 GLU A 231 GLU A 239 1 9 HELIX 7 7 SER B 27 TYR B 46 1 20 HELIX 8 8 THR B 59 GLN B 65 1 7 HELIX 9 9 ALA B 108 GLU B 110 5 3 HELIX 10 10 GLN B 111 PHE B 124 1 14 HELIX 11 11 GLN B 161 GLN B 165 5 5 HELIX 12 12 SER B 167 SER B 188 1 22 HELIX 13 13 GLU B 231 GLU B 239 1 9 SHEET 1 A 7 SER A 68 TYR A 71 0 SHEET 2 A 7 PHE A 74 VAL A 77 -1 O ILE A 76 N VAL A 69 SHEET 3 A 7 PHE A 84 ARG A 89 -1 O CYS A 88 N GLN A 75 SHEET 4 A 7 LYS A 132 THR A 136 -1 O TRP A 133 N ALA A 87 SHEET 5 A 7 PHE A 153 LYS A 158 -1 O TYR A 156 N LYS A 132 SHEET 6 A 7 PHE A 98 ILE A 105 -1 N PHE A 103 O LEU A 155 SHEET 7 A 7 VAL A 208 ASN A 212 -1 O ARG A 211 N LYS A 102 SHEET 1 B 7 MET B 70 TYR B 71 0 SHEET 2 B 7 PHE B 74 VAL B 77 -1 O PHE B 74 N TYR B 71 SHEET 3 B 7 PHE B 84 ARG B 89 -1 O CYS B 88 N GLN B 75 SHEET 4 B 7 LYS B 132 THR B 136 -1 O TRP B 133 N ALA B 87 SHEET 5 B 7 PHE B 153 LYS B 158 -1 O THR B 154 N LYS B 134 SHEET 6 B 7 PHE B 98 ILE B 105 -1 N PHE B 103 O LEU B 155 SHEET 7 B 7 VAL B 208 ASN B 212 -1 O SER B 209 N HIS B 104 SITE 1 AC1 5 ARG A 175 ASP A 204 TRP A 205 MET A 237 SITE 2 AC1 5 ILE A 238 CRYST1 62.125 62.125 239.586 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016097 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016097 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004174 0.00000