HEADER ISOMERASE 25-JUN-09 3I0Y TITLE CRYSTAL STRUCTURE OF A PUTATIVE POLYKETIDE CYCLASE (XCC0381) FROM TITLE 2 XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE POLYKETIDE CYCLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 340; SOURCE 4 GENE: NP_635776.1, XCC0381; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS CYSTATIN-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3I0Y 1 REMARK SEQADV REVDAT 4 24-JUL-19 3I0Y 1 REMARK LINK REVDAT 3 25-OCT-17 3I0Y 1 REMARK REVDAT 2 23-MAR-11 3I0Y 1 HEADER TITLE KEYWDS REVDAT 1 21-JUL-09 3I0Y 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE POLYKETIDE CYCLASE JRNL TITL 2 (NP_635776.1) FROM XANTHOMONAS CAMPESTRIS AT 1.50 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 85795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4292 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6012 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 343 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4289 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 539 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.452 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4675 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3080 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6375 ; 1.595 ; 1.918 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7373 ; 0.946 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 593 ; 5.866 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 269 ;33.188 ;23.309 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 686 ;13.323 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;16.567 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 660 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5578 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1105 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1096 ; 0.253 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3525 ; 0.217 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2393 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2689 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 424 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.216 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 115 ; 0.343 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.235 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2901 ; 2.069 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1178 ; 0.570 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4566 ; 3.082 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2008 ; 4.797 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1809 ; 6.489 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. CL IONS, AND PEG FRAGMENTS (PEG) FROM EITHER REMARK 3 THE CRYSTALLIZATION CONDITION (PEG3350) OR THE CRYO CONDITION REMARK 3 (PEG200) ARE MODELED. 4. ELECTRON DENSITY IN THE PUTATIVE ACTIVE REMARK 3 SITE NEAR GLU-65 IN EACH CHAIN HAS BEEN MODELED AS AN UNKNOWN REMARK 3 LIGAND (UNL). THE DENSITY LOOKS SOMEWHAT LIKE A CALCIUM ION WITH REMARK 3 A PEG MOLECULE, ESPECIALLY IN CHAINS A, B AND C, BUT IT COULD BE REMARK 3 SOMETHING ELSE. REMARK 4 REMARK 4 3I0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97849 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HO RIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85826 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.527 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : 0.49100 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.0500M CALCIUM CHLORIDE, 23.1000% REMARK 280 POLYETHYLENE GLYCOL 3350, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.38800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY PROVIDES REMARK 300 SUPPORTING EVIDENCE THAT A DIMER IS A SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 ARG B 139 REMARK 465 GLY C 0 REMARK 465 MSE C 1 REMARK 465 SER C 2 REMARK 465 ARG C 139 REMARK 465 GLY D 0 REMARK 465 MSE D 1 REMARK 465 SER D 2 REMARK 465 GLU D 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 LEU A 98 CG CD1 CD2 REMARK 470 ASP A 100 CG OD1 OD2 REMARK 470 ASN A 102 CG OD1 ND2 REMARK 470 SER B 4 OG REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 GLU B 96 CD OE1 OE2 REMARK 470 LEU B 98 CG CD1 CD2 REMARK 470 ASP B 100 CG OD1 OD2 REMARK 470 GLU C 3 CG CD OE1 OE2 REMARK 470 SER C 4 OG REMARK 470 GLN C 7 CD OE1 NE2 REMARK 470 ASP C 100 CG OD1 OD2 REMARK 470 ASN C 102 CG OD1 ND2 REMARK 470 SER D 4 OG REMARK 470 GLN D 57 CD OE1 NE2 REMARK 470 ARG D 117 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 85 CE2 TYR A 85 CD2 -0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 96 108.03 -45.34 REMARK 500 ASN A 102 20.92 -145.30 REMARK 500 ASP C 95 -101.16 -103.01 REMARK 500 GLU C 96 86.69 -150.39 REMARK 500 ASN C 102 20.58 -164.60 REMARK 500 ASN D 102 31.27 -147.98 REMARK 500 ASN D 102 42.70 -147.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG D 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL D 142 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391539 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3I0Y A 1 139 UNP Q8PDF7 Q8PDF7_XANCP 1 139 DBREF 3I0Y B 1 139 UNP Q8PDF7 Q8PDF7_XANCP 1 139 DBREF 3I0Y C 1 139 UNP Q8PDF7 Q8PDF7_XANCP 1 139 DBREF 3I0Y D 1 139 UNP Q8PDF7 Q8PDF7_XANCP 1 139 SEQADV 3I0Y GLY A 0 UNP Q8PDF7 EXPRESSION TAG SEQADV 3I0Y GLY B 0 UNP Q8PDF7 EXPRESSION TAG SEQADV 3I0Y GLY C 0 UNP Q8PDF7 EXPRESSION TAG SEQADV 3I0Y GLY D 0 UNP Q8PDF7 EXPRESSION TAG SEQRES 1 A 140 GLY MSE SER GLU SER ASN ARG GLN ARG ALA THR GLY LEU SEQRES 2 A 140 VAL GLN ALA TYR TYR GLU ALA PHE ASN ARG GLY ASP TRP SEQRES 3 A 140 ASP ALA MSE LEU ALA PHE LEU ALA GLU ASP VAL ALA HIS SEQRES 4 A 140 ASP LEU ASN GLN GLY PRO ARG GLU ILE GLY ARG ALA ALA SEQRES 5 A 140 PHE ALA SER PHE LEU GLN ARG MSE ASN ASP SER TYR ARG SEQRES 6 A 140 GLU GLN LEU ARG ASP ILE VAL VAL THR ALA ASN ASP GLU SEQRES 7 A 140 GLY THR ARG VAL GLY ALA GLU TYR VAL VAL HIS GLY VAL SEQRES 8 A 140 TYR HIS THR THR ASP GLU GLY LEU PRO ASP ALA ASN GLY SEQRES 9 A 140 GLN THR TYR VAL LEU PRO GLY GLY ALA PHE PHE ASP VAL SEQRES 10 A 140 ARG ASP GLY GLN ILE THR ARG VAL THR ASN TYR TYR ASN SEQRES 11 A 140 LEU GLN GLU TRP ILE ALA GLN VAL SER ARG SEQRES 1 B 140 GLY MSE SER GLU SER ASN ARG GLN ARG ALA THR GLY LEU SEQRES 2 B 140 VAL GLN ALA TYR TYR GLU ALA PHE ASN ARG GLY ASP TRP SEQRES 3 B 140 ASP ALA MSE LEU ALA PHE LEU ALA GLU ASP VAL ALA HIS SEQRES 4 B 140 ASP LEU ASN GLN GLY PRO ARG GLU ILE GLY ARG ALA ALA SEQRES 5 B 140 PHE ALA SER PHE LEU GLN ARG MSE ASN ASP SER TYR ARG SEQRES 6 B 140 GLU GLN LEU ARG ASP ILE VAL VAL THR ALA ASN ASP GLU SEQRES 7 B 140 GLY THR ARG VAL GLY ALA GLU TYR VAL VAL HIS GLY VAL SEQRES 8 B 140 TYR HIS THR THR ASP GLU GLY LEU PRO ASP ALA ASN GLY SEQRES 9 B 140 GLN THR TYR VAL LEU PRO GLY GLY ALA PHE PHE ASP VAL SEQRES 10 B 140 ARG ASP GLY GLN ILE THR ARG VAL THR ASN TYR TYR ASN SEQRES 11 B 140 LEU GLN GLU TRP ILE ALA GLN VAL SER ARG SEQRES 1 C 140 GLY MSE SER GLU SER ASN ARG GLN ARG ALA THR GLY LEU SEQRES 2 C 140 VAL GLN ALA TYR TYR GLU ALA PHE ASN ARG GLY ASP TRP SEQRES 3 C 140 ASP ALA MSE LEU ALA PHE LEU ALA GLU ASP VAL ALA HIS SEQRES 4 C 140 ASP LEU ASN GLN GLY PRO ARG GLU ILE GLY ARG ALA ALA SEQRES 5 C 140 PHE ALA SER PHE LEU GLN ARG MSE ASN ASP SER TYR ARG SEQRES 6 C 140 GLU GLN LEU ARG ASP ILE VAL VAL THR ALA ASN ASP GLU SEQRES 7 C 140 GLY THR ARG VAL GLY ALA GLU TYR VAL VAL HIS GLY VAL SEQRES 8 C 140 TYR HIS THR THR ASP GLU GLY LEU PRO ASP ALA ASN GLY SEQRES 9 C 140 GLN THR TYR VAL LEU PRO GLY GLY ALA PHE PHE ASP VAL SEQRES 10 C 140 ARG ASP GLY GLN ILE THR ARG VAL THR ASN TYR TYR ASN SEQRES 11 C 140 LEU GLN GLU TRP ILE ALA GLN VAL SER ARG SEQRES 1 D 140 GLY MSE SER GLU SER ASN ARG GLN ARG ALA THR GLY LEU SEQRES 2 D 140 VAL GLN ALA TYR TYR GLU ALA PHE ASN ARG GLY ASP TRP SEQRES 3 D 140 ASP ALA MSE LEU ALA PHE LEU ALA GLU ASP VAL ALA HIS SEQRES 4 D 140 ASP LEU ASN GLN GLY PRO ARG GLU ILE GLY ARG ALA ALA SEQRES 5 D 140 PHE ALA SER PHE LEU GLN ARG MSE ASN ASP SER TYR ARG SEQRES 6 D 140 GLU GLN LEU ARG ASP ILE VAL VAL THR ALA ASN ASP GLU SEQRES 7 D 140 GLY THR ARG VAL GLY ALA GLU TYR VAL VAL HIS GLY VAL SEQRES 8 D 140 TYR HIS THR THR ASP GLU GLY LEU PRO ASP ALA ASN GLY SEQRES 9 D 140 GLN THR TYR VAL LEU PRO GLY GLY ALA PHE PHE ASP VAL SEQRES 10 D 140 ARG ASP GLY GLN ILE THR ARG VAL THR ASN TYR TYR ASN SEQRES 11 D 140 LEU GLN GLU TRP ILE ALA GLN VAL SER ARG MODRES 3I0Y MSE A 28 MET SELENOMETHIONINE MODRES 3I0Y MSE A 59 MET SELENOMETHIONINE MODRES 3I0Y MSE B 28 MET SELENOMETHIONINE MODRES 3I0Y MSE B 59 MET SELENOMETHIONINE MODRES 3I0Y MSE C 28 MET SELENOMETHIONINE MODRES 3I0Y MSE C 59 MET SELENOMETHIONINE MODRES 3I0Y MSE D 28 MET SELENOMETHIONINE MODRES 3I0Y MSE D 59 MET SELENOMETHIONINE HET MSE A 28 8 HET MSE A 59 16 HET MSE B 28 8 HET MSE B 59 24 HET MSE C 28 16 HET MSE C 59 16 HET MSE D 28 8 HET MSE D 59 16 HET CL A 140 1 HET CL A 141 1 HET PEG A 142 7 HET UNL A 143 9 HET CL B 140 1 HET CL B 141 1 HET PEG B 142 7 HET PEG B 143 7 HET UNL B 144 9 HET CL C 140 1 HET UNL C 141 9 HET CL D 140 1 HET PEG D 141 7 HET UNL D 142 11 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM UNL UNKNOWN LIGAND FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 CL 6(CL 1-) FORMUL 7 PEG 4(C4 H10 O3) FORMUL 19 HOH *539(H2 O) HELIX 1 1 SER A 2 GLY A 23 1 22 HELIX 2 2 ASP A 24 PHE A 31 1 8 HELIX 3 3 GLY A 48 SER A 62 1 15 HELIX 4 4 ASN A 129 SER A 138 1 10 HELIX 5 5 SER B 4 GLY B 23 1 20 HELIX 6 6 ASP B 24 PHE B 31 1 8 HELIX 7 7 GLY B 48 SER B 62 1 15 HELIX 8 8 ASN B 129 SER B 138 1 10 HELIX 9 9 GLU C 3 GLY C 23 1 21 HELIX 10 10 ASP C 24 PHE C 31 1 8 HELIX 11 11 GLY C 48 SER C 62 1 15 HELIX 12 12 ASN C 129 SER C 138 1 10 HELIX 13 13 SER D 4 GLY D 23 1 20 HELIX 14 14 ASP D 24 PHE D 31 1 8 HELIX 15 15 GLY D 48 SER D 62 1 15 HELIX 16 16 ASN D 129 SER D 138 1 10 SHEET 1 A 6 ARG A 45 ILE A 47 0 SHEET 2 A 6 LEU A 32 ASP A 39 -1 N HIS A 38 O GLU A 46 SHEET 3 A 6 GLN A 120 TYR A 128 1 O ILE A 121 N ALA A 33 SHEET 4 A 6 GLN A 104 ARG A 117 -1 N GLY A 111 O TYR A 127 SHEET 5 A 6 ARG A 80 TYR A 91 -1 N TYR A 91 O GLN A 104 SHEET 6 A 6 TYR A 63 ALA A 74 -1 N THR A 73 O GLY A 82 SHEET 1 B 6 ARG B 45 ILE B 47 0 SHEET 2 B 6 LEU B 32 ASP B 39 -1 N HIS B 38 O GLU B 46 SHEET 3 B 6 GLN B 120 TYR B 128 1 O ILE B 121 N ALA B 33 SHEET 4 B 6 GLN B 104 ARG B 117 -1 N GLY B 111 O TYR B 127 SHEET 5 B 6 ARG B 80 TYR B 91 -1 N VAL B 81 O PHE B 114 SHEET 6 B 6 TYR B 63 ALA B 74 -1 N THR B 73 O GLY B 82 SHEET 1 C 6 ARG C 45 ILE C 47 0 SHEET 2 C 6 LEU C 32 ASP C 39 -1 N HIS C 38 O GLU C 46 SHEET 3 C 6 GLN C 120 TYR C 128 1 O VAL C 124 N ASP C 39 SHEET 4 C 6 THR C 105 ARG C 117 -1 N PHE C 113 O THR C 125 SHEET 5 C 6 ARG C 80 TYR C 91 -1 N VAL C 87 O LEU C 108 SHEET 6 C 6 TYR C 63 ALA C 74 -1 N ARG C 68 O VAL C 86 SHEET 1 D 6 ARG D 45 ILE D 47 0 SHEET 2 D 6 LEU D 32 ASP D 39 -1 N HIS D 38 O GLU D 46 SHEET 3 D 6 GLN D 120 TYR D 128 1 O ILE D 121 N ALA D 33 SHEET 4 D 6 GLN D 104 ARG D 117 -1 N GLY D 111 O TYR D 127 SHEET 5 D 6 ARG D 80 TYR D 91 -1 N VAL D 87 O LEU D 108 SHEET 6 D 6 TYR D 63 ALA D 74 -1 N ARG D 68 O VAL D 86 LINK C ALA A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N LEU A 29 1555 1555 1.37 LINK C ARG A 58 N AMSE A 59 1555 1555 1.32 LINK C ARG A 58 N BMSE A 59 1555 1555 1.33 LINK C AMSE A 59 N ASN A 60 1555 1555 1.32 LINK C BMSE A 59 N ASN A 60 1555 1555 1.33 LINK C ALA B 27 N MSE B 28 1555 1555 1.34 LINK C MSE B 28 N LEU B 29 1555 1555 1.33 LINK C AARG B 58 N AMSE B 59 1555 1555 1.32 LINK C BARG B 58 N BMSE B 59 1555 1555 1.34 LINK C AMSE B 59 N ASN B 60 1555 1555 1.32 LINK C BMSE B 59 N ASN B 60 1555 1555 1.33 LINK C CMSE B 59 N ASN B 60 1555 1555 1.33 LINK C ALA C 27 N AMSE C 28 1555 1555 1.33 LINK C ALA C 27 N BMSE C 28 1555 1555 1.35 LINK C AMSE C 28 N LEU C 29 1555 1555 1.34 LINK C BMSE C 28 N LEU C 29 1555 1555 1.33 LINK C ARG C 58 N AMSE C 59 1555 1555 1.34 LINK C ARG C 58 N BMSE C 59 1555 1555 1.33 LINK C AMSE C 59 N ASN C 60 1555 1555 1.32 LINK C BMSE C 59 N ASN C 60 1555 1555 1.33 LINK C ALA D 27 N MSE D 28 1555 1555 1.32 LINK C MSE D 28 N LEU D 29 1555 1555 1.32 LINK C ARG D 58 N AMSE D 59 1555 1555 1.33 LINK C ARG D 58 N BMSE D 59 1555 1555 1.33 LINK C AMSE D 59 N ASN D 60 1555 1555 1.32 LINK C BMSE D 59 N ASN D 60 1555 1555 1.33 SITE 1 AC1 3 ASN A 41 ASN A 126 HOH A 167 SITE 1 AC2 5 ASN A 41 GLN A 42 TYR A 127 HOH A 155 SITE 2 AC2 5 ASN B 129 SITE 1 AC3 3 VAL A 107 GLN A 136 ARG A 139 SITE 1 AC4 9 TYR A 16 TYR A 17 TYR A 63 GLU A 65 SITE 2 AC4 9 TYR A 85 ALA A 112 ASN A 126 TRP A 133 SITE 3 AC4 9 HOH A 267 SITE 1 AC5 4 ASN B 41 ASN B 126 HOH B 171 HOH B 192 SITE 1 AC6 5 ASN A 129 ASN B 41 GLN B 42 TYR B 127 SITE 2 AC6 5 HOH B 184 SITE 1 AC7 5 ASN B 21 ARG B 22 GLN B 66 LEU B 67 SITE 2 AC7 5 ARG C 45 SITE 1 AC8 7 THR B 105 VAL B 107 HOH B 185 HOH B 281 SITE 2 AC8 7 ALA C 50 LEU D 12 ALA D 15 SITE 1 AC9 10 TYR B 16 TYR B 17 MSE B 59 GLU B 65 SITE 2 AC9 10 TYR B 85 ALA B 112 ASN B 126 TYR B 128 SITE 3 AC9 10 HOH B 145 HOH B 461 SITE 1 BC1 4 ASN C 41 ASN C 126 HOH C 185 HOH C 271 SITE 1 BC2 10 TYR C 16 TYR C 17 MSE C 59 TYR C 63 SITE 2 BC2 10 GLU C 65 TYR C 85 ALA C 112 ASN C 126 SITE 3 BC2 10 TYR C 128 HOH C 300 SITE 1 BC3 3 ASN D 41 ASN D 126 HOH D 170 SITE 1 BC4 6 ARG A 45 HOH A 174 PRO B 109 ASN D 21 SITE 2 BC4 6 ARG D 22 GLN D 66 SITE 1 BC5 11 TYR D 16 TYR D 17 PHE D 55 MSE D 59 SITE 2 BC5 11 GLU D 65 TYR D 85 ALA D 112 ASN D 126 SITE 3 BC5 11 TYR D 128 TRP D 133 HOH D 336 CRYST1 47.627 98.776 62.053 90.00 110.45 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020997 0.000000 0.007829 0.00000 SCALE2 0.000000 0.010124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017199 0.00000