HEADER HYDROLASE 25-JUN-09 3I15 TITLE COBALT-SUBSTITUTED METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS: TITLE 2 RESIDUE CYS168 FULLY OXIDIZED COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-LACTAMASE II, PENICILLINASE, CEPHALOSPORINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 STRAIN: 569/H/9; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS KEYWDS ANTIBIOTIC RESISTANCE, METALLO-BETA-LACTAMASE SUPERFAMILY, ZN- KEYWDS 2 DEPENDENT HYDROLASE, HYDROLASE, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.M.GONZALEZ,A.BUSCHIAZZO,A.J.VILA REVDAT 2 20-OCT-10 3I15 1 JRNL REVDAT 1 29-DEC-09 3I15 0 JRNL AUTH J.M.GONZALEZ,A.BUSCHIAZZO,A.J.VILA JRNL TITL EVIDENCE OF ADAPTABILITY IN METAL COORDINATION GEOMETRY AND JRNL TITL 2 ACTIVE-SITE LOOP CONFORMATION AMONG B1 JRNL TITL 3 METALLO-BETA-LACTAMASES . JRNL REF BIOCHEMISTRY V. 49 7930 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20677753 JRNL DOI 10.1021/BI100894R REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 30132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1524 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1848 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1647 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 1.32000 REMARK 3 B33 (A**2) : -1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.883 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1745 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1131 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2380 ; 1.784 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2819 ; 1.619 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 6.696 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;40.208 ;25.946 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 318 ;12.162 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;15.153 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 283 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1933 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 308 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1098 ; 1.096 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 454 ; 0.316 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1780 ; 1.883 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 647 ; 2.868 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 594 ; 4.577 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): 1 ;11.234 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 11 REMARK 3 RESIDUE RANGE : A 15 A 31 REMARK 3 RESIDUE RANGE : A 39 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4727 -0.8815 18.2199 REMARK 3 T TENSOR REMARK 3 T11: 0.0239 T22: 0.0272 REMARK 3 T33: 0.0506 T12: -0.0013 REMARK 3 T13: 0.0127 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.9729 L22: 0.4914 REMARK 3 L33: 2.9230 L12: -0.2436 REMARK 3 L13: 0.8672 L23: -0.1338 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: 0.1091 S13: 0.0062 REMARK 3 S21: -0.0299 S22: -0.0436 S23: -0.0230 REMARK 3 S31: -0.0324 S32: 0.2568 S33: 0.0821 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3I15 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB053833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MULTILAYER MIRRORS (VARIMAX-HF) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30132 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.549 REMARK 200 RESOLUTION RANGE LOW (A) : 40.291 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 9.1290 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36300 REMARK 200 R SYM FOR SHELL (I) : 0.36300 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, 0.1 M SODIUM REMARK 280 TARTRATE, 18% PEG 3350, 40 MM COSO4, 1 MM DTT, PH 5.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 26.59400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.91100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 26.59400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.91100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLN A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 32 REMARK 465 SER A 33 REMARK 465 PHE A 34 REMARK 465 ASN A 35 REMARK 465 GLY A 36 REMARK 465 GLU A 37 REMARK 465 ALA A 38 REMARK 465 VAL A 39 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 THR A 13 OG1 CG2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LEU A 31 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 90 O HOH A 404 1.80 REMARK 500 ND2 ASN A 187 O HOH A 301 1.91 REMARK 500 O PRO A 40 ND1 HIS A 210 1.97 REMARK 500 O ASN A 187 O HOH A 441 1.97 REMARK 500 O HOH A 362 O HOH A 396 2.10 REMARK 500 ND2 ASN A 11 OE2 GLU A 66 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 187 O HOH A 383 2556 1.96 REMARK 500 O HOH A 253 O HOH A 362 2556 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 158 CB - CG - CD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 13 154.38 88.51 REMARK 500 ASP A 56 145.26 70.31 REMARK 500 SER A 57 -136.03 -100.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 300 DISTANCE = 6.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 228 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HIS A 88 ND1 95.5 REMARK 620 3 HIS A 149 NE2 99.1 99.5 REMARK 620 4 OCS A 168 OD1 92.6 168.6 87.0 REMARK 620 5 HOH A 404 O 97.5 99.7 153.1 71.2 REMARK 620 6 HOH A 341 O 173.0 85.8 87.5 85.2 75.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 228 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BVT RELATED DB: PDB REMARK 900 RELATED ID: 1BC2 RELATED DB: PDB REMARK 900 RELATED ID: 3I0V RELATED DB: PDB REMARK 900 RELATED ID: 3I11 RELATED DB: PDB REMARK 900 RELATED ID: 3I13 RELATED DB: PDB REMARK 900 RELATED ID: 3I14 RELATED DB: PDB DBREF 3I15 A 1 227 UNP P04190 BLA2_BACCE 31 257 SEQRES 1 A 227 SER GLN LYS VAL GLU LYS THR VAL ILE LYS ASN GLU THR SEQRES 2 A 227 GLY THR ILE SER ILE SER GLN LEU ASN LYS ASN VAL TRP SEQRES 3 A 227 VAL HIS THR GLU LEU GLY SER PHE ASN GLY GLU ALA VAL SEQRES 4 A 227 PRO SER ASN GLY LEU VAL LEU ASN THR SER LYS GLY LEU SEQRES 5 A 227 VAL LEU VAL ASP SER SER TRP ASP ASP LYS LEU THR LYS SEQRES 6 A 227 GLU LEU ILE GLU MET VAL GLU LYS LYS PHE GLN LYS ARG SEQRES 7 A 227 VAL THR ASP VAL ILE ILE THR HIS ALA HIS ALA ASP ARG SEQRES 8 A 227 ILE GLY GLY ILE LYS THR LEU LYS GLU ARG GLY ILE LYS SEQRES 9 A 227 ALA HIS SER THR ALA LEU THR ALA GLU LEU ALA LYS LYS SEQRES 10 A 227 ASN GLY TYR GLU GLU PRO LEU GLY ASP LEU GLN THR VAL SEQRES 11 A 227 THR ASN LEU LYS PHE GLY ASN MET LYS VAL GLU THR PHE SEQRES 12 A 227 TYR PRO GLY LYS GLY HIS THR GLU ASP ASN ILE VAL VAL SEQRES 13 A 227 TRP LEU PRO GLN TYR ASN ILE LEU VAL GLY GLY OCS LEU SEQRES 14 A 227 VAL LYS SER THR SER ALA LYS ASP LEU GLY ASN VAL ALA SEQRES 15 A 227 ASP ALA TYR VAL ASN GLU TRP SER THR SER ILE GLU ASN SEQRES 16 A 227 VAL LEU LYS ARG TYR ARG ASN ILE ASN ALA VAL VAL PRO SEQRES 17 A 227 GLY HIS GLY GLU VAL GLY ASP LYS GLY LEU LEU LEU HIS SEQRES 18 A 227 THR LEU ASP LEU LEU LYS MODRES 3I15 OCS A 168 CYS CYSTEINESULFONIC ACID HET OCS A 168 9 HET CO A 228 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM CO COBALT (II) ION FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 CO CO 2+ FORMUL 3 HOH *266(H2 O) HELIX 1 1 ASP A 60 GLN A 76 1 17 HELIX 2 2 HIS A 88 GLY A 93 1 6 HELIX 3 3 GLY A 94 GLY A 102 1 9 HELIX 4 4 THR A 108 ASN A 118 1 11 HELIX 5 5 OCS A 168 VAL A 170 5 3 HELIX 6 6 ASN A 187 TYR A 200 1 14 HELIX 7 7 LYS A 216 LEU A 226 1 11 SHEET 1 A 7 VAL A 8 LYS A 10 0 SHEET 2 A 7 ILE A 16 ASN A 22 -1 O ILE A 18 N ILE A 9 SHEET 3 A 7 VAL A 25 GLU A 30 -1 O VAL A 27 N SER A 19 SHEET 4 A 7 SER A 41 THR A 48 -1 O VAL A 45 N TRP A 26 SHEET 5 A 7 GLY A 51 VAL A 55 -1 O VAL A 53 N LEU A 46 SHEET 6 A 7 VAL A 79 ILE A 83 1 O THR A 80 N LEU A 52 SHEET 7 A 7 LYS A 104 HIS A 106 1 O HIS A 106 N VAL A 82 SHEET 1 B 5 VAL A 130 PHE A 135 0 SHEET 2 B 5 MET A 138 PHE A 143 -1 O VAL A 140 N LEU A 133 SHEET 3 B 5 VAL A 155 TRP A 157 -1 O TRP A 157 N GLU A 141 SHEET 4 B 5 ILE A 163 GLY A 167 -1 O VAL A 165 N VAL A 156 SHEET 5 B 5 ALA A 205 PRO A 208 1 O VAL A 207 N LEU A 164 LINK C GLY A 167 N OCS A 168 1555 1555 1.32 LINK C OCS A 168 N LEU A 169 1555 1555 1.33 LINK NE2 HIS A 86 CO CO A 228 1555 1555 2.09 LINK ND1 HIS A 88 CO CO A 228 1555 1555 2.13 LINK NE2 HIS A 149 CO CO A 228 1555 1555 2.07 LINK OD1 OCS A 168 CO CO A 228 1555 1555 2.46 LINK CO CO A 228 O HOH A 404 1555 1555 2.10 LINK CO CO A 228 O HOH A 341 1555 1555 2.25 SITE 1 AC1 6 HIS A 86 HIS A 88 HIS A 149 OCS A 168 SITE 2 AC1 6 HOH A 341 HOH A 404 CRYST1 53.188 61.822 69.521 90.00 93.24 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018801 0.000000 0.001065 0.00000 SCALE2 0.000000 0.016175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014407 0.00000