HEADER OXIDOREDUCTASE 26-JUN-09 3I1J TITLE STRUCTURE OF A PUTATIVE SHORT CHAIN DEHYDROGENASE FROM PSEUDOMONAS TITLE 2 SYRINGAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. TOMATO; SOURCE 3 ORGANISM_TAXID: 323; SOURCE 4 STRAIN: PV TOMATO STRAIN DC3000; SOURCE 5 GENE: PSPTO1740, PSPTO_1740; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS SHORT-CHAIN DEHYDROGENASE, PSEUDOMONAS SYRINGAE, DIMER, MIXED ALPHA- KEYWDS 2 BETA, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.U.SINGER,E.EVDOKIMOVA,M.KUDRITSKA,A.M.EDWARDS,A.JOACHIMIAK, AUTHOR 2 A.SAVCHENKO,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 03-APR-24 3I1J 1 REMARK LINK REVDAT 2 22-FEB-12 3I1J 1 AUTHOR VERSN REVDAT 1 14-JUL-09 3I1J 0 JRNL AUTH A.U.SINGER,E.EVDOKIMOVA,M.KUDRITSKA,A.M.EDWARDS,A.SAVCHENKO JRNL TITL STRUCTURE OF A PUTATIVE SHORT CHAIN DEHYDROGENASE FROM JRNL TITL 2 PSEUDOMONAS SYRINGAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 33762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1765 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2432 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3654 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.330 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3799 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5147 ; 1.501 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 495 ; 5.698 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;37.567 ;23.976 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 601 ;16.094 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;19.431 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 581 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2919 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1842 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2595 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 286 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.268 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 77 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2460 ; 0.702 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3916 ; 1.214 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1363 ; 2.270 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1231 ; 3.627 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3I1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 44.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: GENERATED FROM SWISS-MODELLER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M BIS-TRIS REMARK 280 PH5.5, 25%PEG3350. CRYOPROTECTED IN 25% ETHYLENE GLYCOL , VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.62650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.54300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.79950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.54300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.62650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.79950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MOLECULES A AND B ARE PREDICTED TO FORM A DIMER IN THE SAME REMARK 300 MANNER AS FOUND IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 465 GLN B 207 REMARK 465 PRO B 210 REMARK 465 ASP B 211 REMARK 465 GLU B 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 215 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 63 -122.91 -107.66 REMARK 500 ASP A 145 97.00 -160.72 REMARK 500 SER A 152 -152.03 -126.59 REMARK 500 ASP B 145 99.75 -160.22 REMARK 500 SER B 152 -150.74 -113.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 250 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MSE A 131 O REMARK 620 2 ASP B 115 OD2 135.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 252 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EDO A 251 O2 REMARK 620 2 GLU B 116 OE2 92.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 252 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7743 RELATED DB: TARGETDB DBREF 3I1J A 1 246 UNP Q885U1 Q885U1_PSESM 1 246 DBREF 3I1J B 1 246 UNP Q885U1 Q885U1_PSESM 1 246 SEQADV 3I1J GLY A 0 UNP Q885U1 EXPRESSION TAG SEQADV 3I1J GLY B 0 UNP Q885U1 EXPRESSION TAG SEQRES 1 A 247 GLY MSE PHE ASP TYR SER ALA HIS PRO GLU LEU LEU LYS SEQRES 2 A 247 GLY ARG VAL ILE LEU VAL THR GLY ALA ALA ARG GLY ILE SEQRES 3 A 247 GLY ALA ALA ALA ALA ARG ALA TYR ALA ALA HIS GLY ALA SEQRES 4 A 247 SER VAL VAL LEU LEU GLY ARG THR GLU ALA SER LEU ALA SEQRES 5 A 247 GLU VAL SER ASP GLN ILE LYS SER ALA GLY GLN PRO GLN SEQRES 6 A 247 PRO LEU ILE ILE ALA LEU ASN LEU GLU ASN ALA THR ALA SEQRES 7 A 247 GLN GLN TYR ARG GLU LEU ALA ALA ARG VAL GLU HIS GLU SEQRES 8 A 247 PHE GLY ARG LEU ASP GLY LEU LEU HIS ASN ALA SER ILE SEQRES 9 A 247 ILE GLY PRO ARG THR PRO LEU GLU GLN LEU PRO ASP GLU SEQRES 10 A 247 ASP PHE MSE GLN VAL MSE HIS VAL ASN VAL ASN ALA THR SEQRES 11 A 247 PHE MSE LEU THR ARG ALA LEU LEU PRO LEU LEU LYS ARG SEQRES 12 A 247 SER GLU ASP ALA SER ILE ALA PHE THR SER SER SER VAL SEQRES 13 A 247 GLY ARG LYS GLY ARG ALA ASN TRP GLY ALA TYR GLY VAL SEQRES 14 A 247 SER LYS PHE ALA THR GLU GLY LEU MSE GLN THR LEU ALA SEQRES 15 A 247 ASP GLU LEU GLU GLY VAL THR ALA VAL ARG ALA ASN SER SEQRES 16 A 247 ILE ASN PRO GLY ALA THR ARG THR GLY MSE ARG ALA GLN SEQRES 17 A 247 ALA TYR PRO ASP GLU ASN PRO LEU ASN ASN PRO ALA PRO SEQRES 18 A 247 GLU ASP ILE MSE PRO VAL TYR LEU TYR LEU MSE GLY PRO SEQRES 19 A 247 ASP SER THR GLY ILE ASN GLY GLN ALA LEU ASN ALA GLN SEQRES 1 B 247 GLY MSE PHE ASP TYR SER ALA HIS PRO GLU LEU LEU LYS SEQRES 2 B 247 GLY ARG VAL ILE LEU VAL THR GLY ALA ALA ARG GLY ILE SEQRES 3 B 247 GLY ALA ALA ALA ALA ARG ALA TYR ALA ALA HIS GLY ALA SEQRES 4 B 247 SER VAL VAL LEU LEU GLY ARG THR GLU ALA SER LEU ALA SEQRES 5 B 247 GLU VAL SER ASP GLN ILE LYS SER ALA GLY GLN PRO GLN SEQRES 6 B 247 PRO LEU ILE ILE ALA LEU ASN LEU GLU ASN ALA THR ALA SEQRES 7 B 247 GLN GLN TYR ARG GLU LEU ALA ALA ARG VAL GLU HIS GLU SEQRES 8 B 247 PHE GLY ARG LEU ASP GLY LEU LEU HIS ASN ALA SER ILE SEQRES 9 B 247 ILE GLY PRO ARG THR PRO LEU GLU GLN LEU PRO ASP GLU SEQRES 10 B 247 ASP PHE MSE GLN VAL MSE HIS VAL ASN VAL ASN ALA THR SEQRES 11 B 247 PHE MSE LEU THR ARG ALA LEU LEU PRO LEU LEU LYS ARG SEQRES 12 B 247 SER GLU ASP ALA SER ILE ALA PHE THR SER SER SER VAL SEQRES 13 B 247 GLY ARG LYS GLY ARG ALA ASN TRP GLY ALA TYR GLY VAL SEQRES 14 B 247 SER LYS PHE ALA THR GLU GLY LEU MSE GLN THR LEU ALA SEQRES 15 B 247 ASP GLU LEU GLU GLY VAL THR ALA VAL ARG ALA ASN SER SEQRES 16 B 247 ILE ASN PRO GLY ALA THR ARG THR GLY MSE ARG ALA GLN SEQRES 17 B 247 ALA TYR PRO ASP GLU ASN PRO LEU ASN ASN PRO ALA PRO SEQRES 18 B 247 GLU ASP ILE MSE PRO VAL TYR LEU TYR LEU MSE GLY PRO SEQRES 19 B 247 ASP SER THR GLY ILE ASN GLY GLN ALA LEU ASN ALA GLN MODRES 3I1J MSE A 1 MET SELENOMETHIONINE MODRES 3I1J MSE A 119 MET SELENOMETHIONINE MODRES 3I1J MSE A 122 MET SELENOMETHIONINE MODRES 3I1J MSE A 131 MET SELENOMETHIONINE MODRES 3I1J MSE A 177 MET SELENOMETHIONINE MODRES 3I1J MSE A 204 MET SELENOMETHIONINE MODRES 3I1J MSE A 224 MET SELENOMETHIONINE MODRES 3I1J MSE A 231 MET SELENOMETHIONINE MODRES 3I1J MSE B 1 MET SELENOMETHIONINE MODRES 3I1J MSE B 119 MET SELENOMETHIONINE MODRES 3I1J MSE B 122 MET SELENOMETHIONINE MODRES 3I1J MSE B 131 MET SELENOMETHIONINE MODRES 3I1J MSE B 177 MET SELENOMETHIONINE MODRES 3I1J MSE B 204 MET SELENOMETHIONINE MODRES 3I1J MSE B 224 MET SELENOMETHIONINE MODRES 3I1J MSE B 231 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 119 8 HET MSE A 122 8 HET MSE A 131 8 HET MSE A 177 8 HET MSE A 204 8 HET MSE A 224 8 HET MSE A 231 8 HET MSE B 1 8 HET MSE B 119 8 HET MSE B 122 8 HET MSE B 131 8 HET MSE B 177 8 HET MSE B 204 8 HET MSE B 224 8 HET MSE B 231 8 HET EDO A 247 4 HET ACT A 248 4 HET EDO A 249 4 HET EDO A 250 4 HET EDO A 251 4 HET EDO A 252 4 HET EDO A 253 4 HET NA A 254 1 HET CL A 255 1 HET EDO B 247 4 HET EDO B 248 4 HET EDO B 249 4 HET NA B 250 1 HET NA B 251 1 HET NA B 252 1 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 EDO 9(C2 H6 O2) FORMUL 4 ACT C2 H3 O2 1- FORMUL 10 NA 4(NA 1+) FORMUL 11 CL CL 1- FORMUL 18 HOH *324(H2 O) HELIX 1 1 ARG A 23 HIS A 36 1 14 HELIX 2 2 THR A 46 ALA A 60 1 15 HELIX 3 3 THR A 76 GLY A 92 1 17 HELIX 4 4 PRO A 109 LEU A 113 5 5 HELIX 5 5 PRO A 114 VAL A 126 1 13 HELIX 6 6 VAL A 126 LYS A 141 1 16 HELIX 7 7 SER A 153 ARG A 157 5 5 HELIX 8 8 TRP A 163 GLU A 185 1 23 HELIX 9 9 THR A 202 TYR A 209 1 8 HELIX 10 10 ASN A 213 ASN A 217 5 5 HELIX 11 11 ALA A 219 ILE A 223 5 5 HELIX 12 12 MSE A 224 GLY A 232 1 9 HELIX 13 13 PRO A 233 THR A 236 5 4 HELIX 14 14 ARG B 23 HIS B 36 1 14 HELIX 15 15 THR B 46 ALA B 60 1 15 HELIX 16 16 THR B 76 GLY B 92 1 17 HELIX 17 17 PRO B 109 LEU B 113 5 5 HELIX 18 18 PRO B 114 VAL B 126 1 13 HELIX 19 19 VAL B 126 SER B 143 1 18 HELIX 20 20 SER B 153 ARG B 157 5 5 HELIX 21 21 TRP B 163 GLU B 185 1 23 HELIX 22 22 ASN B 213 ASN B 217 5 5 HELIX 23 23 ALA B 219 ASP B 222 5 4 HELIX 24 24 ILE B 223 GLY B 232 1 10 HELIX 25 25 PRO B 233 THR B 236 5 4 SHEET 1 A 7 LEU A 66 ALA A 69 0 SHEET 2 A 7 SER A 39 GLY A 44 1 N LEU A 42 O LEU A 66 SHEET 3 A 7 VAL A 15 VAL A 18 1 N ILE A 16 O SER A 39 SHEET 4 A 7 GLY A 96 HIS A 99 1 O LEU A 98 N LEU A 17 SHEET 5 A 7 ALA A 146 THR A 151 1 O ALA A 149 N HIS A 99 SHEET 6 A 7 VAL A 190 ASN A 196 1 O ASN A 193 N PHE A 150 SHEET 7 A 7 ALA A 242 ASN A 244 1 O LEU A 243 N SER A 194 SHEET 1 B 7 LEU B 66 ALA B 69 0 SHEET 2 B 7 SER B 39 GLY B 44 1 N LEU B 42 O LEU B 66 SHEET 3 B 7 VAL B 15 THR B 19 1 N VAL B 18 O VAL B 41 SHEET 4 B 7 GLY B 96 HIS B 99 1 O LEU B 98 N LEU B 17 SHEET 5 B 7 ALA B 146 THR B 151 1 O ALA B 149 N HIS B 99 SHEET 6 B 7 VAL B 190 ASN B 196 1 O ARG B 191 N ILE B 148 SHEET 7 B 7 ALA B 242 ASN B 244 1 O LEU B 243 N ASN B 196 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N PHE A 2 1555 1555 1.32 LINK C PHE A 118 N MSE A 119 1555 1555 1.33 LINK C MSE A 119 N GLN A 120 1555 1555 1.33 LINK C VAL A 121 N MSE A 122 1555 1555 1.34 LINK C MSE A 122 N HIS A 123 1555 1555 1.33 LINK C PHE A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N LEU A 132 1555 1555 1.34 LINK C LEU A 176 N MSE A 177 1555 1555 1.33 LINK C MSE A 177 N GLN A 178 1555 1555 1.33 LINK C GLY A 203 N MSE A 204 1555 1555 1.33 LINK C MSE A 204 N ARG A 205 1555 1555 1.34 LINK C ILE A 223 N MSE A 224 1555 1555 1.32 LINK C MSE A 224 N PRO A 225 1555 1555 1.36 LINK C LEU A 230 N MSE A 231 1555 1555 1.32 LINK C MSE A 231 N GLY A 232 1555 1555 1.33 LINK C MSE B 1 N PHE B 2 1555 1555 1.34 LINK C PHE B 118 N MSE B 119 1555 1555 1.34 LINK C MSE B 119 N GLN B 120 1555 1555 1.33 LINK C VAL B 121 N MSE B 122 1555 1555 1.34 LINK C MSE B 122 N HIS B 123 1555 1555 1.32 LINK C PHE B 130 N MSE B 131 1555 1555 1.32 LINK C MSE B 131 N LEU B 132 1555 1555 1.33 LINK C LEU B 176 N MSE B 177 1555 1555 1.32 LINK C MSE B 177 N GLN B 178 1555 1555 1.34 LINK C GLY B 203 N MSE B 204 1555 1555 1.33 LINK C MSE B 204 N ARG B 205 1555 1555 1.34 LINK C ILE B 223 N MSE B 224 1555 1555 1.33 LINK C MSE B 224 N PRO B 225 1555 1555 1.35 LINK C LEU B 230 N MSE B 231 1555 1555 1.33 LINK C MSE B 231 N GLY B 232 1555 1555 1.33 LINK O MSE A 131 NA NA B 250 1555 1555 3.10 LINK O2 EDO A 251 NA NA B 252 1555 1555 3.11 LINK O SER B 49 NA NA B 251 1555 1555 2.13 LINK OD2 ASP B 115 NA NA B 250 1555 1555 3.03 LINK OE2 GLU B 116 NA NA B 252 1555 1555 2.15 CISPEP 1 GLN A 62 PRO A 63 0 -19.35 SITE 1 AC1 8 ILE A 67 ILE A 68 ALA A 69 ARG A 86 SITE 2 AC1 8 PRO A 106 ARG A 107 HOH A 285 HOH A 330 SITE 1 AC2 8 SER A 153 SER A 154 VAL A 155 TRP A 163 SITE 2 AC2 8 ARG A 205 TYR A 209 EDO A 249 HOH A 382 SITE 1 AC3 8 ILE A 104 TYR A 166 ARG A 205 ALA A 208 SITE 2 AC3 8 ACT A 248 HOH A 262 HOH A 382 HOH A 408 SITE 1 AC4 3 HIS A 7 LYS B 141 ARG B 142 SITE 1 AC5 8 ARG A 23 THR A 76 ALA A 77 HOH A 349 SITE 2 AC5 8 HOH A 377 ASP B 115 MSE B 119 NA B 252 SITE 1 AC6 8 GLY A 20 LEU A 43 GLY A 44 ARG A 45 SITE 2 AC6 8 LEU A 70 LEU A 72 ALA A 101 HOH A 443 SITE 1 AC7 6 LEU A 184 GLY A 186 THR A 188 VAL A 190 SITE 2 AC7 6 HOH A 375 HOH A 434 SITE 1 AC8 1 ASP A 117 SITE 1 AC9 3 GLY A 203 HOH A 268 HOH A 356 SITE 1 BC1 6 LEU A 110 GLU A 111 LYS B 141 GLU B 183 SITE 2 BC1 6 LEU B 184 HOH B 389 SITE 1 BC2 5 SER A 5 HIS A 7 GLU B 88 GLY B 92 SITE 2 BC2 5 ARG B 142 SITE 1 BC3 5 GLY A 186 VAL A 187 PHE B 2 ASN B 244 SITE 2 BC3 5 GLN B 246 SITE 1 BC4 2 MSE A 131 ASP B 115 SITE 1 BC5 5 ALA B 22 SER B 49 LEU B 50 GLU B 52 SITE 2 BC5 5 VAL B 53 SITE 1 BC6 5 ARG A 23 SER A 49 ALA A 77 EDO A 251 SITE 2 BC6 5 GLU B 116 CRYST1 47.253 71.599 131.086 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007629 0.00000