HEADER REPLICATION 29-JUN-09 3I2M TITLE THE CRYSTAL STRUCTURE OF PF-8, THE DNA POLYMERASE ACCESSORY SUBUNIT TITLE 2 FROM KAPOSI S SARCOMA-ASSOCIATED HERPESVIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF59; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: UNP RESIDUES 2-304; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8; SOURCE 3 ORGANISM_COMMON: HHV-8; SOURCE 4 ORGANISM_TAXID: 37296; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROCESSIVITY, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR J.L.BALTZ,D.J.FILMAN,M.CIUSTEA,J.E.Y.SILVERMAN,C.L.LAUTENSCHLAGER, AUTHOR 2 D.M.COEN,R.P.RICCIARDI,J.M.HOGLE REVDAT 3 13-OCT-21 3I2M 1 SEQADV LINK REVDAT 2 13-JUL-11 3I2M 1 VERSN REVDAT 1 12-MAY-10 3I2M 0 JRNL AUTH J.L.BALTZ,D.J.FILMAN,M.CIUSTEA,J.E.SILVERMAN, JRNL AUTH 2 C.L.LAUTENSCHLAGER,D.M.COEN,R.P.RICCIARDI,J.M.HOGLE JRNL TITL THE CRYSTAL STRUCTURE OF PF-8, THE DNA POLYMERASE ACCESSORY JRNL TITL 2 SUBUNIT FROM KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS. JRNL REF J.VIROL. V. 83 12215 2009 JRNL REFN ISSN 0022-538X JRNL PMID 19759157 JRNL DOI 10.1128/JVI.01158-09 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0093 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 9267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 465 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 823 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3630 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2145 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.66000 REMARK 3 B22 (A**2) : 2.66000 REMARK 3 B33 (A**2) : -3.98000 REMARK 3 B12 (A**2) : 1.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.284 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.391 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.324 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.824 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2183 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2964 ; 1.839 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 1.600 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;21.996 ;23.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 358 ;10.093 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.760 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1587 ; 0.001 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1415 ; 0.764 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2282 ; 1.480 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 768 ; 1.442 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 682 ; 2.522 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 4 X 300 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7329 -14.1581 203.4016 REMARK 3 T TENSOR REMARK 3 T11: 0.2510 T22: 0.1220 REMARK 3 T33: 0.2145 T12: 0.0206 REMARK 3 T13: 0.0437 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 5.6048 L22: 2.5120 REMARK 3 L33: 5.6879 L12: 3.0278 REMARK 3 L13: 4.2485 L23: 2.9444 REMARK 3 S TENSOR REMARK 3 S11: -0.1454 S12: 0.3427 S13: 0.2023 REMARK 3 S21: -0.2688 S22: -0.0770 S23: 0.1615 REMARK 3 S31: -0.2708 S32: 0.1206 S33: 0.2225 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3I2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10103 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 18.0120 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.1 REMARK 200 DATA REDUNDANCY IN SHELL : 0.05 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : 0.49200 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 100 MM TRIS HCL PH 8.2, REMARK 280 0.2 M LITHIUM CHLORIDE, AND 20 MM DTT, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 128.97333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 257.94667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 193.46000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 322.43333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.48667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 128.97333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 257.94667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 322.43333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 193.46000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 64.48667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 29.15000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -50.48928 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 451.40667 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X -4 REMARK 465 PRO X -3 REMARK 465 ILE X -2 REMARK 465 SER X -1 REMARK 465 GLU X 0 REMARK 465 PHE X 1 REMARK 465 PRO X 2 REMARK 465 VAL X 3 REMARK 465 GLY X 114 REMARK 465 GLU X 115 REMARK 465 ALA X 116 REMARK 465 CYS X 117 REMARK 465 ASP X 118 REMARK 465 THR X 119 REMARK 465 GLY X 120 REMARK 465 ALA X 121 REMARK 465 GLN X 122 REMARK 465 ASN X 301 REMARK 465 ARG X 302 REMARK 465 SER X 303 REMARK 465 VAL X 304 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP X 4 CG OD1 OD2 REMARK 470 LYS X 18 CG CD CE NZ REMARK 470 ARG X 112 CG CD NE CZ NH1 NH2 REMARK 470 LYS X 113 CG CD CE NZ REMARK 470 PRO X 123 CG CD REMARK 470 LYS X 171 CG CD CE NZ REMARK 470 LYS X 178 CG CD CE NZ REMARK 470 LYS X 216 CG CD CE NZ REMARK 470 LYS X 232 CG CD CE NZ REMARK 470 ASP X 235 O REMARK 470 LYS X 260 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA X 55 59.05 -150.64 REMARK 500 GLU X 74 -6.10 -155.08 REMARK 500 SER X 76 51.84 -115.79 REMARK 500 ASN X 102 34.04 -92.92 REMARK 500 ARG X 112 -130.05 -139.17 REMARK 500 ASN X 135 48.18 -69.34 REMARK 500 ARG X 156 49.67 -106.77 REMARK 500 GLU X 158 97.63 -48.39 REMARK 500 ALA X 159 -134.79 -97.70 REMARK 500 ARG X 162 4.12 -161.48 REMARK 500 THR X 163 136.27 -25.79 REMARK 500 GLN X 182 14.44 -68.79 REMARK 500 THR X 185 -168.06 -113.04 REMARK 500 SER X 200 61.36 39.89 REMARK 500 SER X 233 -38.19 -166.58 REMARK 500 TRP X 264 -54.62 -138.77 REMARK 500 ASN X 274 -116.79 -72.53 REMARK 500 GLU X 275 -0.40 -144.07 REMARK 500 SER X 288 34.16 -93.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HSL RELATED DB: PDB REMARK 900 3HSL WAS SOLVED BY MOLECULAR REPLACEMENT USING THIS DEPOSITION AS REMARK 900 THE STARTING MODEL. DBREF 3I2M X 2 304 UNP Q77ZG5 Q77ZG5_HHV8 2 304 SEQADV 3I2M GLY X -4 UNP Q77ZG5 EXPRESSION TAG SEQADV 3I2M PRO X -3 UNP Q77ZG5 EXPRESSION TAG SEQADV 3I2M ILE X -2 UNP Q77ZG5 EXPRESSION TAG SEQADV 3I2M SER X -1 UNP Q77ZG5 EXPRESSION TAG SEQADV 3I2M GLU X 0 UNP Q77ZG5 EXPRESSION TAG SEQADV 3I2M PHE X 1 UNP Q77ZG5 EXPRESSION TAG SEQADV 3I2M MSE X 60 UNP Q77ZG5 LEU 60 ENGINEERED MUTATION SEQADV 3I2M MSE X 167 UNP Q77ZG5 LEU 167 ENGINEERED MUTATION SEQADV 3I2M MSE X 258 UNP Q77ZG5 LEU 258 ENGINEERED MUTATION SEQRES 1 X 309 GLY PRO ILE SER GLU PHE PRO VAL ASP PHE HIS TYR GLY SEQRES 2 X 309 VAL ARG VAL ASP VAL THR LEU LEU SER LYS ILE ARG ARG SEQRES 3 X 309 VAL ASN GLU HIS ILE LYS SER ALA THR LYS THR GLY VAL SEQRES 4 X 309 VAL GLN VAL HIS GLY SER ALA CYS THR PRO THR LEU SER SEQRES 5 X 309 VAL LEU SER SER VAL GLY THR ALA GLY VAL LEU GLY MSE SEQRES 6 X 309 ARG ILE LYS ASN ALA LEU THR PRO LEU VAL GLY HIS THR SEQRES 7 X 309 GLU GLY SER GLY ASP VAL SER PHE SER PHE ARG ASN THR SEQRES 8 X 309 SER VAL GLY SER GLY PHE THR HIS THR ARG GLU LEU PHE SEQRES 9 X 309 GLY ALA ASN VAL LEU ASP ALA GLY ILE ALA PHE TYR ARG SEQRES 10 X 309 LYS GLY GLU ALA CYS ASP THR GLY ALA GLN PRO GLN PHE SEQRES 11 X 309 VAL ARG THR THR ILE SER TYR GLY ASP ASN LEU THR SER SEQRES 12 X 309 THR VAL HIS LYS SER VAL VAL ASP GLN LYS GLY ILE LEU SEQRES 13 X 309 PRO PHE HIS ASP ARG MSE GLU ALA GLY GLY ARG THR THR SEQRES 14 X 309 ARG LEU MSE LEU CYS GLY LYS THR GLY ALA PHE LEU LEU SEQRES 15 X 309 LYS TRP LEU ARG GLN GLN LYS THR LYS GLU ASP GLN THR SEQRES 16 X 309 VAL THR VAL SER VAL SER GLU THR LEU SER ILE VAL THR SEQRES 17 X 309 PHE SER LEU GLY GLY VAL SER LYS ILE ILE ASP PHE LYS SEQRES 18 X 309 PRO GLU THR LYS PRO VAL SER GLY TRP ASP GLY LEU LYS SEQRES 19 X 309 GLY LYS LYS SER VAL ASP VAL GLY VAL VAL HIS THR ASP SEQRES 20 X 309 ALA LEU SER ARG VAL SER LEU GLU SER LEU ILE ALA ALA SEQRES 21 X 309 LEU ARG MSE CYS LYS VAL PRO GLY TRP PHE THR PRO GLY SEQRES 22 X 309 LEU ILE TRP HIS SER ASN GLU ILE LEU GLU VAL GLU GLY SEQRES 23 X 309 VAL PRO THR GLY CYS GLN SER GLY ASP VAL LYS LEU SER SEQRES 24 X 309 VAL LEU LEU LEU GLU VAL ASN ARG SER VAL MODRES 3I2M MSE X 60 MET SELENOMETHIONINE MODRES 3I2M MSE X 157 MET SELENOMETHIONINE MODRES 3I2M MSE X 167 MET SELENOMETHIONINE MODRES 3I2M MSE X 258 MET SELENOMETHIONINE HET MSE X 60 8 HET MSE X 157 8 HET MSE X 167 8 HET MSE X 258 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) HELIX 1 1 ASP X 12 LYS X 31 1 20 HELIX 2 2 THR X 93 PHE X 99 1 7 HELIX 3 3 CYS X 169 GLN X 182 1 14 HELIX 4 4 LEU X 249 CYS X 259 1 11 SHEET 1 A 5 LEU X 66 PRO X 68 0 SHEET 2 A 5 TYR X 7 VAL X 11 -1 N ARG X 10 O THR X 67 SHEET 3 A 5 VAL X 103 TYR X 111 -1 O PHE X 110 N TYR X 7 SHEET 4 A 5 PHE X 125 TYR X 132 -1 O SER X 131 N LEU X 104 SHEET 5 A 5 SER X 138 VAL X 144 -1 O SER X 143 N VAL X 126 SHEET 1 B 9 ASP X 78 ARG X 84 0 SHEET 2 B 9 VAL X 34 SER X 40 -1 N VAL X 35 O PHE X 83 SHEET 3 B 9 THR X 45 SER X 51 -1 O THR X 45 N HIS X 38 SHEET 4 B 9 GLY X 56 ILE X 62 -1 O ILE X 62 N LEU X 46 SHEET 5 B 9 VAL X 291 LEU X 297 -1 O SER X 294 N GLY X 59 SHEET 6 B 9 LEU X 277 PRO X 283 -1 N LEU X 277 O LEU X 297 SHEET 7 B 9 PHE X 265 TRP X 271 -1 N THR X 266 O VAL X 282 SHEET 8 B 9 THR X 164 MSE X 167 -1 N THR X 164 O TRP X 271 SHEET 9 B 9 GLY X 237 VAL X 238 -1 O VAL X 238 N ARG X 165 SHEET 1 C 4 VAL X 209 ASP X 214 0 SHEET 2 C 4 ILE X 201 LEU X 206 -1 N VAL X 202 O ILE X 213 SHEET 3 C 4 THR X 190 SER X 196 -1 N THR X 192 O SER X 205 SHEET 4 C 4 ALA X 243 SER X 248 -1 O ALA X 243 N VAL X 195 LINK C GLY X 59 N MSE X 60 1555 1555 1.34 LINK C MSE X 60 N ARG X 61 1555 1555 1.33 LINK C ARG X 156 N MSE X 157 1555 1555 1.33 LINK C MSE X 157 N GLU X 158 1555 1555 1.33 LINK C LEU X 166 N MSE X 167 1555 1555 1.32 LINK C MSE X 167 N LEU X 168 1555 1555 1.33 LINK C ARG X 257 N MSE X 258 1555 1555 1.33 LINK C MSE X 258 N CYS X 259 1555 1555 1.33 CISPEP 1 LYS X 229 GLY X 230 0 -0.78 CRYST1 58.300 58.300 386.920 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017153 0.009903 0.000000 0.00000 SCALE2 0.000000 0.019806 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002585 0.00000