HEADER ENDOCYTOSIS 29-JUN-09 3I2W TITLE CRYSTAL STRUCTURE OF EFC/F-BAR DOMAIN OF DROSOPHILA TITLE 2 SYNDAPIN/PACSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNDAPIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EFC/F-BAR DOMAIN, UNP RESIDUES 14-303 OUT OF 494; COMPND 5 SYNONYM: LD46328P; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CG33094, DMEL_CG33094, SYND, SYNDAPIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS EFC, FBAR, SH3 DOMAIN, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR M.A.EDELING,D.J.OWEN,L.M.TRAUB REVDAT 1 02-MAR-10 3I2W 0 JRNL AUTH M.A.EDELING,S.SANKER,T.SHIMA,P.K.UMASANKAR, JRNL AUTH 2 S.HONING,H.Y.KIM,L.A.DAVIDSON,S.C.WATKINS,M.TSANG, JRNL AUTH 3 D.J.OWEN,L.M.TRAUB JRNL TITL STRUCTURAL REQUIREMENTS FOR PACSIN/SYNDAPIN JRNL TITL 2 OPERATION DURING ZEBRAFISH EMBRYONIC NOTOCHORD JRNL TITL 3 DEVELOPMENT. JRNL REF PLOS ONE V. 4 E8150 2009 JRNL REFN ESSN 1932-6203 JRNL PMID 19997509 JRNL DOI 10.1371/JOURNAL.PONE.0008150 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1522 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2010 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.73000 REMARK 3 B22 (A**2) : -4.54000 REMARK 3 B33 (A**2) : 0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.449 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.286 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.876 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4720 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6345 ; 2.108 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 552 ; 6.881 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;35.891 ;25.328 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 923 ;20.734 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;13.461 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 663 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3524 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2767 ; 1.024 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4471 ; 2.048 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1953 ; 3.464 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1874 ; 5.877 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3I2W COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUL-09. REMARK 100 THE RCSB ID CODE IS RCSB053895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30043 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 78.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.600 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 0.37700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 3350, 0.1M DISODIUM REMARK 280 PHOSPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.29750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.43000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.76250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 96.43000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.29750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.76250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 169 REMARK 465 GLN A 170 REMARK 465 GLU A 171 REMARK 465 ARG A 172 REMARK 465 ASN A 173 REMARK 465 ALA A 174 REMARK 465 ASN A 175 REMARK 465 ALA A 176 REMARK 465 ASP A 177 REMARK 465 SER A 178 REMARK 465 SER A 179 REMARK 465 LEU A 180 REMARK 465 SER A 181 REMARK 465 PRO A 182 REMARK 465 ASP A 183 REMARK 465 GLN A 184 REMARK 465 VAL A 185 REMARK 465 LYS A 186 REMARK 465 LYS A 187 REMARK 465 MSE A 188 REMARK 465 PHE B 299 REMARK 465 VAL B 300 REMARK 465 GLU B 301 REMARK 465 TYR B 302 REMARK 465 THR B 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 325 O HOH B 327 2.16 REMARK 500 CG2 THR A 27 OE2 GLU A 133 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 37 CB CYS A 37 SG -0.097 REMARK 500 SER A 159 CB SER A 159 OG 0.106 REMARK 500 CYS A 252 CB CYS A 252 SG -0.144 REMARK 500 GLU B 244 CG GLU B 244 CD 0.105 REMARK 500 GLU B 244 CD GLU B 244 OE1 0.073 REMARK 500 GLU B 244 CD GLU B 244 OE2 0.101 REMARK 500 CYS B 252 CB CYS B 252 SG -0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 254 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 106 -66.02 -133.95 REMARK 500 LEU A 123 -127.51 45.51 REMARK 500 SER A 260 -3.69 -56.29 REMARK 500 GLU A 301 -175.85 -65.26 REMARK 500 ASN B 291 38.65 -86.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS A 141 24.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 69 O REMARK 620 2 GLU A 70 O 65.0 REMARK 620 3 GLY A 72 O 77.7 77.7 REMARK 620 4 GLU A 74 O 117.6 175.5 106.2 REMARK 620 5 GLU A 79 OE2 80.4 95.0 158.0 82.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 69 O REMARK 620 2 GLU B 70 O 67.3 REMARK 620 3 GLY B 72 O 80.7 77.9 REMARK 620 4 GLU B 74 O 112.8 174.9 97.0 REMARK 620 5 GLU B 79 OE2 81.6 95.2 162.3 89.9 REMARK 620 6 HOH B 322 O 129.0 65.3 72.3 112.7 119.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 304 DBREF 3I2W A 14 303 UNP Q9VDI1 Q9VDI1_DROME 14 303 DBREF 3I2W B 14 303 UNP Q9VDI1 Q9VDI1_DROME 14 303 SEQRES 1 A 290 SER ASP SER PHE TRP GLU PRO GLY ASN TYR LYS ARG THR SEQRES 2 A 290 THR LYS ARG ILE GLU ASP GLY TYR LYS LEU CYS ASN ASP SEQRES 3 A 290 LEU GLN GLN LEU ILE GLN GLU ARG ALA ASP ILE GLU LYS SEQRES 4 A 290 GLY TYR ALA LYS SER LEU ARG THR TRP SER LYS LYS TRP SEQRES 5 A 290 GLY GLU LEU ILE GLU LYS GLY PRO GLU TYR GLY THR THR SEQRES 6 A 290 GLU ALA ALA TRP LYS GLY VAL LEU THR GLU SER GLU ARG SEQRES 7 A 290 ILE SER ASP VAL HIS MSE LYS ILE LYS ASP ASN LEU CYS SEQRES 8 A 290 ASN ASP VAL ASN SER GLN ILE LYS THR TRP GLN LYS GLU SEQRES 9 A 290 ASN TYR HIS HIS THR LEU MSE GLN ILE LYS GLU ARG LYS SEQRES 10 A 290 ASP LEU GLU ASP LEU PHE LYS LYS ALA GLN LYS PRO TRP SEQRES 11 A 290 ALA LYS LEU LEU ALA LYS VAL GLU LYS ALA LYS ALA ASP SEQRES 12 A 290 TYR HIS SER ALA CYS LYS THR GLU ARG SER ALA THR ASN SEQRES 13 A 290 GLN GLU ARG ASN ALA ASN ALA ASP SER SER LEU SER PRO SEQRES 14 A 290 ASP GLN VAL LYS LYS MSE HIS ASP ARG VAL GLN LYS THR SEQRES 15 A 290 LYS ASP GLN VAL GLN LYS CYS ARG GLU LYS TYR GLU GLN SEQRES 16 A 290 ALA ILE ALA GLU ILE THR LYS TYR ASN SER VAL TYR ILE SEQRES 17 A 290 GLU ASP MSE THR SER VAL PHE GLU LYS CYS GLN THR PHE SEQRES 18 A 290 GLU LYS THR ARG LEU GLN PHE PHE LYS GLU ILE LEU PHE SEQRES 19 A 290 ASN VAL HIS SER CYS LEU ASP LEU THR LYS VAL GLN SER SEQRES 20 A 290 LEU PRO GLN ILE TYR GLU GLU PHE SER HIS THR ILE ASN SEQRES 21 A 290 ASN ALA ASP GLN GLN LYS ASP LEU LYS TRP TRP SER ASN SEQRES 22 A 290 ASN HIS GLY ILE ASN MSE ALA MSE ASN TRP PRO SER PHE SEQRES 23 A 290 VAL GLU TYR THR SEQRES 1 B 290 SER ASP SER PHE TRP GLU PRO GLY ASN TYR LYS ARG THR SEQRES 2 B 290 THR LYS ARG ILE GLU ASP GLY TYR LYS LEU CYS ASN ASP SEQRES 3 B 290 LEU GLN GLN LEU ILE GLN GLU ARG ALA ASP ILE GLU LYS SEQRES 4 B 290 GLY TYR ALA LYS SER LEU ARG THR TRP SER LYS LYS TRP SEQRES 5 B 290 GLY GLU LEU ILE GLU LYS GLY PRO GLU TYR GLY THR THR SEQRES 6 B 290 GLU ALA ALA TRP LYS GLY VAL LEU THR GLU SER GLU ARG SEQRES 7 B 290 ILE SER ASP VAL HIS MSE LYS ILE LYS ASP ASN LEU CYS SEQRES 8 B 290 ASN ASP VAL ASN SER GLN ILE LYS THR TRP GLN LYS GLU SEQRES 9 B 290 ASN TYR HIS HIS THR LEU MSE GLN ILE LYS GLU ARG LYS SEQRES 10 B 290 ASP LEU GLU ASP LEU PHE LYS LYS ALA GLN LYS PRO TRP SEQRES 11 B 290 ALA LYS LEU LEU ALA LYS VAL GLU LYS ALA LYS ALA ASP SEQRES 12 B 290 TYR HIS SER ALA CYS LYS THR GLU ARG SER ALA THR ASN SEQRES 13 B 290 GLN GLU ARG ASN ALA ASN ALA ASP SER SER LEU SER PRO SEQRES 14 B 290 ASP GLN VAL LYS LYS MSE HIS ASP ARG VAL GLN LYS THR SEQRES 15 B 290 LYS ASP GLN VAL GLN LYS CYS ARG GLU LYS TYR GLU GLN SEQRES 16 B 290 ALA ILE ALA GLU ILE THR LYS TYR ASN SER VAL TYR ILE SEQRES 17 B 290 GLU ASP MSE THR SER VAL PHE GLU LYS CYS GLN THR PHE SEQRES 18 B 290 GLU LYS THR ARG LEU GLN PHE PHE LYS GLU ILE LEU PHE SEQRES 19 B 290 ASN VAL HIS SER CYS LEU ASP LEU THR LYS VAL GLN SER SEQRES 20 B 290 LEU PRO GLN ILE TYR GLU GLU PHE SER HIS THR ILE ASN SEQRES 21 B 290 ASN ALA ASP GLN GLN LYS ASP LEU LYS TRP TRP SER ASN SEQRES 22 B 290 ASN HIS GLY ILE ASN MSE ALA MSE ASN TRP PRO SER PHE SEQRES 23 B 290 VAL GLU TYR THR MODRES 3I2W MSE A 97 MET SELENOMETHIONINE MODRES 3I2W MSE A 124 MET SELENOMETHIONINE MODRES 3I2W MSE A 224 MET SELENOMETHIONINE MODRES 3I2W MSE A 292 MET SELENOMETHIONINE MODRES 3I2W MSE A 294 MET SELENOMETHIONINE MODRES 3I2W MSE B 97 MET SELENOMETHIONINE MODRES 3I2W MSE B 124 MET SELENOMETHIONINE MODRES 3I2W MSE B 188 MET SELENOMETHIONINE MODRES 3I2W MSE B 224 MET SELENOMETHIONINE MODRES 3I2W MSE B 292 MET SELENOMETHIONINE MODRES 3I2W MSE B 294 MET SELENOMETHIONINE HET MSE A 97 8 HET MSE A 124 8 HET MSE A 224 8 HET MSE A 292 8 HET MSE A 294 8 HET MSE B 97 8 HET MSE B 124 8 HET MSE B 188 8 HET MSE B 224 8 HET MSE B 292 8 HET MSE B 294 8 HET GOL A 1 6 HET NA A 304 1 HET NA A 3 1 HET GOL B 2 6 HET NA B 304 1 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 NA 3(NA 1+) FORMUL 8 HOH *104(H2 O) HELIX 1 1 TYR A 23 GLY A 72 1 50 HELIX 2 2 TYR A 75 ASP A 106 1 32 HELIX 3 3 ASP A 106 TYR A 119 1 14 HELIX 4 4 LYS A 127 THR A 163 1 37 HELIX 5 5 ASP A 197 ASP A 254 1 58 HELIX 6 6 LEU A 255 VAL A 258 5 4 HELIX 7 7 SER A 260 ASN A 274 1 15 HELIX 8 8 ASP A 276 HIS A 288 1 13 HELIX 9 9 TYR B 23 GLY B 72 1 50 HELIX 10 10 TYR B 75 ASP B 106 1 32 HELIX 11 11 ASP B 106 TYR B 119 1 14 HELIX 12 12 LYS B 127 ASN B 173 1 47 HELIX 13 13 SER B 181 ASP B 254 1 74 HELIX 14 14 LEU B 255 VAL B 258 5 4 HELIX 15 15 GLN B 259 ASN B 274 1 16 HELIX 16 16 ASP B 276 GLY B 289 1 14 SHEET 1 A 2 HIS A 121 THR A 122 0 SHEET 2 A 2 GLN A 125 ILE A 126 -1 O GLN A 125 N THR A 122 SHEET 1 B 2 HIS B 121 THR B 122 0 SHEET 2 B 2 GLN B 125 ILE B 126 -1 O GLN B 125 N THR B 122 LINK C HIS A 96 N MSE A 97 1555 1555 1.31 LINK C MSE A 97 N LYS A 98 1555 1555 1.32 LINK C LEU A 123 N MSE A 124 1555 1555 1.32 LINK C MSE A 124 N GLN A 125 1555 1555 1.34 LINK C ASP A 223 N MSE A 224 1555 1555 1.32 LINK C MSE A 224 N THR A 225 1555 1555 1.33 LINK C ASN A 291 N MSE A 292 1555 1555 1.33 LINK C MSE A 292 N ALA A 293 1555 1555 1.34 LINK C ALA A 293 N MSE A 294 1555 1555 1.33 LINK C MSE A 294 N ASN A 295 1555 1555 1.34 LINK C HIS B 96 N MSE B 97 1555 1555 1.34 LINK C MSE B 97 N LYS B 98 1555 1555 1.32 LINK C LEU B 123 N MSE B 124 1555 1555 1.34 LINK C MSE B 124 N GLN B 125 1555 1555 1.32 LINK C LYS B 187 N MSE B 188 1555 1555 1.32 LINK C MSE B 188 N HIS B 189 1555 1555 1.32 LINK C ASP B 223 N MSE B 224 1555 1555 1.32 LINK C MSE B 224 N THR B 225 1555 1555 1.34 LINK C ASN B 291 N MSE B 292 1555 1555 1.32 LINK C MSE B 292 N ALA B 293 1555 1555 1.33 LINK C ALA B 293 N MSE B 294 1555 1555 1.32 LINK C MSE B 294 N ASN B 295 1555 1555 1.33 LINK O ILE A 69 NA NA A 304 1555 1555 2.89 LINK O GLU A 70 NA NA A 304 1555 1555 2.81 LINK O GLY A 72 NA NA A 304 1555 1555 2.41 LINK O GLU A 74 NA NA A 304 1555 1555 2.36 LINK OE2 GLU A 79 NA NA A 304 1555 1555 2.66 LINK O ILE B 69 NA NA B 304 1555 1555 2.77 LINK O GLU B 70 NA NA B 304 1555 1555 2.81 LINK O GLY B 72 NA NA B 304 1555 1555 2.73 LINK O GLU B 74 NA NA B 304 1555 1555 2.43 LINK OE2 GLU B 79 NA NA B 304 1555 1555 2.53 LINK NA NA B 304 O HOH B 322 1555 1555 2.55 SITE 1 AC1 7 ILE A 50 GLY A 53 SER A 57 ILE B 50 SITE 2 AC1 7 GLY B 53 TYR B 54 SER B 57 SITE 1 AC2 5 ILE A 69 GLU A 70 GLY A 72 GLU A 74 SITE 2 AC2 5 GLU A 79 SITE 1 AC3 1 ASN A 273 SITE 1 AC4 9 HIS B 121 ASP B 177 SER B 178 LEU B 180 SITE 2 AC4 9 PRO B 182 ASN B 286 ASN B 291 HOH B 339 SITE 3 AC4 9 HOH B 341 SITE 1 AC5 6 ILE B 69 GLU B 70 GLY B 72 GLU B 74 SITE 2 AC5 6 GLU B 79 HOH B 322 CRYST1 62.595 85.525 192.860 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015976 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005185 0.00000