HEADER TRANSFERASE 30-JUN-09 3I3R TITLE X-RAY STRUCTURE DIHYDROFOLATE REDUCTASE/THYMIDYLATE SYNTHASE FROM TITLE 2 BABESIA BOVIS AT 2.35A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE/THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.45; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BABESIA BOVIS; SOURCE 3 ORGANISM_TAXID: 484906; SOURCE 4 STRAIN: T2BO; SOURCE 5 GENE: BBOV_II000780; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-HISSMT KEYWDS SSGCID, BABESIA BOVIS, DIHYDROFOLATE REDUCTASE, THYMIDYLATE SYNTHASE, KEYWDS 2 METHYLTRANSFERASE, TRANSFERASE, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID), AUTHOR 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 06-SEP-23 3I3R 1 REMARK REVDAT 4 24-JAN-18 3I3R 1 AUTHOR REVDAT 3 21-SEP-11 3I3R 1 JRNL REVDAT 2 13-JUL-11 3I3R 1 VERSN REVDAT 1 18-AUG-09 3I3R 0 JRNL AUTH D.W.BEGLEY,T.E.EDWARDS,A.C.RAYMOND,E.R.SMITH,R.C.HARTLEY, JRNL AUTH 2 J.ABENDROTH,B.SANKARAN,D.D.LORIMER,P.J.MYLER,B.L.STAKER, JRNL AUTH 3 L.J.STEWART JRNL TITL INHIBITOR-BOUND COMPLEXES OF DIHYDROFOLATE JRNL TITL 2 REDUCTASE-THYMIDYLATE SYNTHASE FROM BABESIA BOVIS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 1070 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 21904052 JRNL DOI 10.1107/S1744309111029009 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 47995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3370 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7607 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : 1.26000 REMARK 3 B33 (A**2) : 0.62000 REMARK 3 B12 (A**2) : 1.04000 REMARK 3 B13 (A**2) : 0.34000 REMARK 3 B23 (A**2) : 1.40000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.365 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.150 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7804 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5168 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10631 ; 1.191 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12562 ; 0.843 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 957 ; 6.815 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 367 ;35.080 ;23.624 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1201 ;14.502 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;21.604 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1192 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8721 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1649 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4821 ; 0.500 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1930 ; 0.092 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7802 ; 0.938 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2983 ; 1.260 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2829 ; 2.056 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 511 5 REMARK 3 1 B 1 B 511 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2804 ; 0.290 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 3478 ; 0.490 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2804 ; 0.460 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 3478 ; 0.480 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3I3R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47995 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 72.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1QZF MODIFIED BY THE CCP4 PROGRAM REMARK 200 CHAINSAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WIZARD SCREEN A1: 20% PEG 8000, 100MM REMARK 280 CHES PH 9.5; BABOA.01191.A AT 11.3MG/ML, MICROFLUDIC MICROBATCH REMARK 280 IN A CRYSTAL CARD, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 SER A 72 REMARK 465 ILE A 73 REMARK 465 PRO A 74 REMARK 465 LYS A 75 REMARK 465 ALA A 76 REMARK 465 SER A 77 REMARK 465 LEU A 78 REMARK 465 ASP A 188 REMARK 465 CYS A 189 REMARK 465 LYS A 190 REMARK 465 THR A 191 REMARK 465 VAL A 192 REMARK 465 PHE A 193 REMARK 465 PRO A 194 REMARK 465 ASP A 195 REMARK 465 VAL A 210 REMARK 465 PRO A 211 REMARK 465 ALA A 511 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 GLU B 51 REMARK 465 VAL B 52 REMARK 465 LEU B 53 REMARK 465 SER B 54 REMARK 465 LYS B 55 REMARK 465 ASN B 56 REMARK 465 SER B 72 REMARK 465 ILE B 73 REMARK 465 PRO B 74 REMARK 465 LYS B 75 REMARK 465 ALA B 76 REMARK 465 SER B 77 REMARK 465 LEU B 78 REMARK 465 PRO B 79 REMARK 465 ASP B 188 REMARK 465 CYS B 189 REMARK 465 LYS B 190 REMARK 465 THR B 191 REMARK 465 VAL B 192 REMARK 465 PHE B 193 REMARK 465 PRO B 194 REMARK 465 ASP B 195 REMARK 465 VAL B 210 REMARK 465 PRO B 211 REMARK 465 PRO B 506 REMARK 465 MET B 507 REMARK 465 ALA B 508 REMARK 465 MET B 509 REMARK 465 SER B 510 REMARK 465 ALA B 511 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 VAL A 52 CG1 CG2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 ASN A 56 CG OD1 ND2 REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 TYR A 70 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 LEU A 80 CG CD1 CD2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 207 CG OD1 OD2 REMARK 470 ILE A 208 CG1 CG2 CD1 REMARK 470 SER A 209 OG REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 ARG A 478 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 ARG B 42 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 67 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 TYR B 70 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 LEU B 80 CG CD1 CD2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 GLU B 102 CG CD OE1 OE2 REMARK 470 SER B 105 OG REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 ASP B 207 CG OD1 OD2 REMARK 470 ILE B 208 CG1 CG2 CD1 REMARK 470 SER B 209 OG REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 291 CG CD CE NZ REMARK 470 LYS B 318 CG CD CE NZ REMARK 470 LYS B 354 CG CD CE NZ REMARK 470 LYS B 386 CG CD CE NZ REMARK 470 LEU B 390 CG CD1 CD2 REMARK 470 ARG B 478 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 520 O HOH B 570 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 393 CB CYS B 393 SG -0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 58.90 35.31 REMARK 500 LYS A 21 11.62 80.77 REMARK 500 ASN A 27 16.20 55.96 REMARK 500 ASN A 56 88.27 -153.02 REMARK 500 THR A 69 106.01 -56.15 REMARK 500 LEU A 80 107.47 -55.87 REMARK 500 VAL A 92 118.42 -162.48 REMARK 500 PRO A 96 90.44 -49.16 REMARK 500 ASN A 303 45.87 39.33 REMARK 500 TYR A 333 -69.08 -17.12 REMARK 500 LEU A 345 -74.26 -106.81 REMARK 500 THR A 352 131.09 -31.17 REMARK 500 ARG A 374 33.96 -145.91 REMARK 500 PHE A 396 122.99 -172.64 REMARK 500 ALA A 451 -100.21 -90.52 REMARK 500 THR B 69 104.20 -51.60 REMARK 500 ASN B 82 17.53 57.96 REMARK 500 VAL B 92 136.13 -176.28 REMARK 500 ASN B 118 -74.35 -83.92 REMARK 500 ASP B 161 -0.79 -53.86 REMARK 500 CYS B 218 68.98 36.66 REMARK 500 ILE B 306 -52.96 -26.91 REMARK 500 PHE B 321 45.56 -92.94 REMARK 500 TYR B 333 -70.75 -13.85 REMARK 500 HIS B 339 36.85 -141.53 REMARK 500 LEU B 345 -78.02 -119.84 REMARK 500 ASN B 369 70.73 -158.75 REMARK 500 ALA B 451 -98.85 -94.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 124 GLY A 125 -138.65 REMARK 500 CYS A 395 PHE A 396 -146.50 REMARK 500 GLY B 124 GLY B 125 -146.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BABOA.01191.A RELATED DB: TARGETDB DBREF 3I3R A 1 511 UNP A7ASX7 A7ASX7_BABBO 1 511 DBREF 3I3R B 1 511 UNP A7ASX7 A7ASX7_BABBO 1 511 SEQRES 1 A 511 MET SER ASN SER TYR GLU GLY CYS GLY ASP LEU THR ILE SEQRES 2 A 511 PHE VAL ALA VAL ALA LEU ASN LYS VAL ILE GLY HIS LYS SEQRES 3 A 511 ASN GLN ILE PRO TRP PRO HIS ILE THR HIS ASP PHE ARG SEQRES 4 A 511 PHE LEU ARG ASN GLY THR THR TYR ILE PRO PRO GLU VAL SEQRES 5 A 511 LEU SER LYS ASN PRO ASP ILE GLN ASN VAL VAL ILE PHE SEQRES 6 A 511 GLY ARG LYS THR TYR GLU SER ILE PRO LYS ALA SER LEU SEQRES 7 A 511 PRO LEU LYS ASN ARG ILE ASN VAL ILE LEU SER ARG THR SEQRES 8 A 511 VAL LYS GLU VAL PRO GLY CYS LEU VAL TYR GLU ASP LEU SEQRES 9 A 511 SER THR ALA ILE ARG ASP LEU ARG ALA ASN VAL PRO HIS SEQRES 10 A 511 ASN LYS ILE PHE ILE LEU GLY GLY SER PHE LEU TYR LYS SEQRES 11 A 511 GLU VAL LEU ASP ASN GLY LEU CYS ASP LYS ILE TYR LEU SEQRES 12 A 511 THR ARG LEU ASN LYS GLU TYR PRO GLY ASP THR TYR PHE SEQRES 13 A 511 PRO ASP ILE PRO ASP THR PHE GLU ILE THR ALA ILE SER SEQRES 14 A 511 PRO THR PHE SER THR ASP PHE VAL SER TYR ASP PHE VAL SEQRES 15 A 511 ILE TYR GLU ARG LYS ASP CYS LYS THR VAL PHE PRO ASP SEQRES 16 A 511 PRO PRO PHE ASP GLN LEU LEU MET THR GLY THR ASP ILE SEQRES 17 A 511 SER VAL PRO LYS PRO LYS TYR VAL ALA CYS PRO GLY VAL SEQRES 18 A 511 ARG ILE ARG ASN HIS GLU GLU PHE GLN TYR LEU ASP ILE SEQRES 19 A 511 LEU ALA ASP VAL LEU SER HIS GLY VAL LEU LYS PRO ASN SEQRES 20 A 511 ARG THR GLY THR ASP ALA TYR SER LYS PHE GLY TYR GLN SEQRES 21 A 511 MET ARG PHE ASP LEU SER ARG SER PHE PRO LEU LEU THR SEQRES 22 A 511 THR LYS LYS VAL ALA LEU ARG SER ILE ILE GLU GLU LEU SEQRES 23 A 511 LEU TRP PHE ILE LYS GLY SER THR ASN GLY ASN ASP LEU SEQRES 24 A 511 LEU ALA LYS ASN VAL ARG ILE TRP GLU LEU ASN GLY ARG SEQRES 25 A 511 ARG ASP PHE LEU ASP LYS ASN GLY PHE THR ASP ARG GLU SEQRES 26 A 511 GLU HIS ASP LEU GLY PRO ILE TYR GLY PHE GLN TRP ARG SEQRES 27 A 511 HIS PHE GLY ALA GLU TYR LEU ASP MET HIS ALA ASP TYR SEQRES 28 A 511 THR GLY LYS GLY ILE ASP GLN LEU ALA GLU ILE ILE ASN SEQRES 29 A 511 ARG ILE LYS THR ASN PRO ASN ASP ARG ARG LEU ILE VAL SEQRES 30 A 511 CYS SER TRP ASN VAL SER ASP LEU LYS LYS MET ALA LEU SEQRES 31 A 511 PRO PRO CYS HIS CYS PHE PHE GLN PHE TYR VAL SER ASP SEQRES 32 A 511 ASN LYS LEU SER CYS MET MET HIS GLN ARG SER CYS ASP SEQRES 33 A 511 LEU GLY LEU GLY VAL PRO PHE ASN ILE ALA SER TYR SER SEQRES 34 A 511 ILE LEU THR ALA MET VAL ALA GLN VAL CYS GLY LEU GLY SEQRES 35 A 511 LEU GLY GLU PHE VAL HIS ASN LEU ALA ASP ALA HIS ILE SEQRES 36 A 511 TYR VAL ASP HIS VAL ASP ALA VAL THR THR GLN ILE ALA SEQRES 37 A 511 ARG ILE PRO HIS PRO PHE PRO ARG LEU ARG LEU ASN PRO SEQRES 38 A 511 ASP ILE ARG ASN ILE GLU ASP PHE THR ILE ASP ASP ILE SEQRES 39 A 511 VAL VAL GLU ASP TYR VAL SER HIS PRO PRO ILE PRO MET SEQRES 40 A 511 ALA MET SER ALA SEQRES 1 B 511 MET SER ASN SER TYR GLU GLY CYS GLY ASP LEU THR ILE SEQRES 2 B 511 PHE VAL ALA VAL ALA LEU ASN LYS VAL ILE GLY HIS LYS SEQRES 3 B 511 ASN GLN ILE PRO TRP PRO HIS ILE THR HIS ASP PHE ARG SEQRES 4 B 511 PHE LEU ARG ASN GLY THR THR TYR ILE PRO PRO GLU VAL SEQRES 5 B 511 LEU SER LYS ASN PRO ASP ILE GLN ASN VAL VAL ILE PHE SEQRES 6 B 511 GLY ARG LYS THR TYR GLU SER ILE PRO LYS ALA SER LEU SEQRES 7 B 511 PRO LEU LYS ASN ARG ILE ASN VAL ILE LEU SER ARG THR SEQRES 8 B 511 VAL LYS GLU VAL PRO GLY CYS LEU VAL TYR GLU ASP LEU SEQRES 9 B 511 SER THR ALA ILE ARG ASP LEU ARG ALA ASN VAL PRO HIS SEQRES 10 B 511 ASN LYS ILE PHE ILE LEU GLY GLY SER PHE LEU TYR LYS SEQRES 11 B 511 GLU VAL LEU ASP ASN GLY LEU CYS ASP LYS ILE TYR LEU SEQRES 12 B 511 THR ARG LEU ASN LYS GLU TYR PRO GLY ASP THR TYR PHE SEQRES 13 B 511 PRO ASP ILE PRO ASP THR PHE GLU ILE THR ALA ILE SER SEQRES 14 B 511 PRO THR PHE SER THR ASP PHE VAL SER TYR ASP PHE VAL SEQRES 15 B 511 ILE TYR GLU ARG LYS ASP CYS LYS THR VAL PHE PRO ASP SEQRES 16 B 511 PRO PRO PHE ASP GLN LEU LEU MET THR GLY THR ASP ILE SEQRES 17 B 511 SER VAL PRO LYS PRO LYS TYR VAL ALA CYS PRO GLY VAL SEQRES 18 B 511 ARG ILE ARG ASN HIS GLU GLU PHE GLN TYR LEU ASP ILE SEQRES 19 B 511 LEU ALA ASP VAL LEU SER HIS GLY VAL LEU LYS PRO ASN SEQRES 20 B 511 ARG THR GLY THR ASP ALA TYR SER LYS PHE GLY TYR GLN SEQRES 21 B 511 MET ARG PHE ASP LEU SER ARG SER PHE PRO LEU LEU THR SEQRES 22 B 511 THR LYS LYS VAL ALA LEU ARG SER ILE ILE GLU GLU LEU SEQRES 23 B 511 LEU TRP PHE ILE LYS GLY SER THR ASN GLY ASN ASP LEU SEQRES 24 B 511 LEU ALA LYS ASN VAL ARG ILE TRP GLU LEU ASN GLY ARG SEQRES 25 B 511 ARG ASP PHE LEU ASP LYS ASN GLY PHE THR ASP ARG GLU SEQRES 26 B 511 GLU HIS ASP LEU GLY PRO ILE TYR GLY PHE GLN TRP ARG SEQRES 27 B 511 HIS PHE GLY ALA GLU TYR LEU ASP MET HIS ALA ASP TYR SEQRES 28 B 511 THR GLY LYS GLY ILE ASP GLN LEU ALA GLU ILE ILE ASN SEQRES 29 B 511 ARG ILE LYS THR ASN PRO ASN ASP ARG ARG LEU ILE VAL SEQRES 30 B 511 CYS SER TRP ASN VAL SER ASP LEU LYS LYS MET ALA LEU SEQRES 31 B 511 PRO PRO CYS HIS CYS PHE PHE GLN PHE TYR VAL SER ASP SEQRES 32 B 511 ASN LYS LEU SER CYS MET MET HIS GLN ARG SER CYS ASP SEQRES 33 B 511 LEU GLY LEU GLY VAL PRO PHE ASN ILE ALA SER TYR SER SEQRES 34 B 511 ILE LEU THR ALA MET VAL ALA GLN VAL CYS GLY LEU GLY SEQRES 35 B 511 LEU GLY GLU PHE VAL HIS ASN LEU ALA ASP ALA HIS ILE SEQRES 36 B 511 TYR VAL ASP HIS VAL ASP ALA VAL THR THR GLN ILE ALA SEQRES 37 B 511 ARG ILE PRO HIS PRO PHE PRO ARG LEU ARG LEU ASN PRO SEQRES 38 B 511 ASP ILE ARG ASN ILE GLU ASP PHE THR ILE ASP ASP ILE SEQRES 39 B 511 VAL VAL GLU ASP TYR VAL SER HIS PRO PRO ILE PRO MET SEQRES 40 B 511 ALA MET SER ALA HET CL A 601 1 HET CL B 601 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *253(H2 O) HELIX 1 1 ILE A 34 THR A 46 1 13 HELIX 2 2 PRO A 49 ASN A 56 1 8 HELIX 3 3 ASP A 103 VAL A 115 1 13 HELIX 4 4 GLY A 125 ASN A 135 1 11 HELIX 5 5 PRO A 197 MET A 203 1 7 HELIX 6 6 GLU A 227 GLY A 242 1 16 HELIX 7 7 ALA A 278 LYS A 291 1 14 HELIX 8 8 GLY A 296 ALA A 301 1 6 HELIX 9 9 TRP A 307 GLY A 311 5 5 HELIX 10 10 ARG A 312 ASN A 319 1 8 HELIX 11 11 ILE A 332 PHE A 340 1 9 HELIX 12 12 ASP A 357 ASN A 369 1 13 HELIX 13 13 ASP A 384 MET A 388 5 5 HELIX 14 14 LEU A 419 CYS A 439 1 21 HELIX 15 15 HIS A 459 ARG A 469 1 11 HELIX 16 16 ASN A 485 PHE A 489 5 5 HELIX 17 17 THR A 490 ASP A 492 5 3 HELIX 18 18 ILE B 34 TYR B 47 1 14 HELIX 19 19 ASP B 103 VAL B 115 1 13 HELIX 20 20 GLY B 125 ASN B 135 1 11 HELIX 21 21 PRO B 197 MET B 203 1 7 HELIX 22 22 GLU B 228 GLY B 242 1 15 HELIX 23 23 LEU B 279 GLY B 292 1 14 HELIX 24 24 GLY B 296 ALA B 301 1 6 HELIX 25 25 GLU B 308 GLY B 311 5 4 HELIX 26 26 ARG B 312 ASN B 319 1 8 HELIX 27 27 ILE B 332 PHE B 340 1 9 HELIX 28 28 ASP B 357 ASN B 369 1 13 HELIX 29 29 ASN B 381 MET B 388 5 8 HELIX 30 30 GLY B 420 CYS B 439 1 20 HELIX 31 31 HIS B 459 ILE B 467 1 9 HELIX 32 32 ASN B 485 PHE B 489 5 5 HELIX 33 33 THR B 490 ASP B 492 5 3 SHEET 1 A 8 LEU A 99 TYR A 101 0 SHEET 2 A 8 ARG A 83 LEU A 88 1 N ILE A 87 O LEU A 99 SHEET 3 A 8 ASN A 61 GLY A 66 1 N VAL A 63 O VAL A 86 SHEET 4 A 8 ILE A 120 ILE A 122 1 O PHE A 121 N VAL A 62 SHEET 5 A 8 LEU A 11 VAL A 17 1 N THR A 12 O ILE A 122 SHEET 6 A 8 CYS A 138 LEU A 146 1 O TYR A 142 N ILE A 13 SHEET 7 A 8 SER A 178 ARG A 186 -1 O VAL A 182 N LEU A 143 SHEET 8 A 8 PHE A 172 SER A 173 -1 N PHE A 172 O TYR A 179 SHEET 1 B 9 LEU A 99 TYR A 101 0 SHEET 2 B 9 ARG A 83 LEU A 88 1 N ILE A 87 O LEU A 99 SHEET 3 B 9 ASN A 61 GLY A 66 1 N VAL A 63 O VAL A 86 SHEET 4 B 9 ILE A 120 ILE A 122 1 O PHE A 121 N VAL A 62 SHEET 5 B 9 LEU A 11 VAL A 17 1 N THR A 12 O ILE A 122 SHEET 6 B 9 CYS A 138 LEU A 146 1 O TYR A 142 N ILE A 13 SHEET 7 B 9 SER A 178 ARG A 186 -1 O VAL A 182 N LEU A 143 SHEET 8 B 9 PHE A 163 ILE A 168 -1 N THR A 166 O ILE A 183 SHEET 9 B 9 ILE A 223 ARG A 224 1 O ILE A 223 N THR A 166 SHEET 1 C 2 VAL A 22 GLY A 24 0 SHEET 2 C 2 THR A 154 TYR A 155 -1 O THR A 154 N ILE A 23 SHEET 1 D 6 VAL A 243 LYS A 245 0 SHEET 2 D 6 ALA A 253 ASP A 264 -1 O SER A 255 N VAL A 243 SHEET 3 D 6 GLY A 442 TYR A 456 -1 O ILE A 455 N TYR A 254 SHEET 4 D 6 LYS A 405 ASP A 416 1 N CYS A 415 O ASP A 452 SHEET 5 D 6 HIS A 394 SER A 402 -1 N TYR A 400 O SER A 407 SHEET 6 D 6 ILE A 376 CYS A 378 -1 N VAL A 377 O PHE A 397 SHEET 1 E 2 ARG A 476 LEU A 479 0 SHEET 2 E 2 ILE A 494 GLU A 497 -1 O VAL A 495 N ARG A 478 SHEET 1 F 8 LEU B 99 TYR B 101 0 SHEET 2 F 8 ILE B 84 LEU B 88 1 N ILE B 87 O LEU B 99 SHEET 3 F 8 VAL B 62 GLY B 66 1 N VAL B 63 O ILE B 84 SHEET 4 F 8 ILE B 120 GLY B 124 1 O LEU B 123 N ILE B 64 SHEET 5 F 8 LEU B 11 VAL B 17 1 N THR B 12 O ILE B 122 SHEET 6 F 8 CYS B 138 LEU B 146 1 O TYR B 142 N ILE B 13 SHEET 7 F 8 SER B 178 ARG B 186 -1 O ASP B 180 N ARG B 145 SHEET 8 F 8 PHE B 172 SER B 173 -1 N PHE B 172 O TYR B 179 SHEET 1 G 9 LEU B 99 TYR B 101 0 SHEET 2 G 9 ILE B 84 LEU B 88 1 N ILE B 87 O LEU B 99 SHEET 3 G 9 VAL B 62 GLY B 66 1 N VAL B 63 O ILE B 84 SHEET 4 G 9 ILE B 120 GLY B 124 1 O LEU B 123 N ILE B 64 SHEET 5 G 9 LEU B 11 VAL B 17 1 N THR B 12 O ILE B 122 SHEET 6 G 9 CYS B 138 LEU B 146 1 O TYR B 142 N ILE B 13 SHEET 7 G 9 SER B 178 ARG B 186 -1 O ASP B 180 N ARG B 145 SHEET 8 G 9 PHE B 163 ILE B 168 -1 N GLU B 164 O GLU B 185 SHEET 9 G 9 ILE B 223 ARG B 224 1 O ILE B 223 N ILE B 168 SHEET 1 H 2 VAL B 22 GLY B 24 0 SHEET 2 H 2 THR B 154 TYR B 155 -1 O THR B 154 N ILE B 23 SHEET 1 I 6 VAL B 243 LYS B 245 0 SHEET 2 I 6 ALA B 253 ASP B 264 -1 O SER B 255 N VAL B 243 SHEET 3 I 6 GLY B 442 TYR B 456 -1 O HIS B 448 N MET B 261 SHEET 4 I 6 LYS B 405 ASP B 416 1 N CYS B 415 O ASP B 452 SHEET 5 I 6 HIS B 394 SER B 402 -1 N TYR B 400 O SER B 407 SHEET 6 I 6 ILE B 376 CYS B 378 -1 N VAL B 377 O PHE B 397 SHEET 1 J 2 ARG B 476 LEU B 479 0 SHEET 2 J 2 ILE B 494 GLU B 497 -1 O VAL B 495 N ARG B 478 SITE 1 AC1 3 ARG A 248 ARG A 413 ARG B 374 SITE 1 AC2 2 ARG B 248 ARG B 413 CRYST1 52.540 83.480 84.190 119.00 97.99 100.69 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019033 0.003594 0.005352 0.00000 SCALE2 0.000000 0.012191 0.007514 0.00000 SCALE3 0.000000 0.000000 0.014090 0.00000